Wall clock time and date at job start Tue Mar 31 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.99964 * 2 1 4 4 C 1.54321 * 109.88560 * 121.09561 * 2 1 3 5 5 H 1.09003 * 110.71812 * 23.24443 * 4 2 1 6 6 N 1.46505 * 110.72191 * 259.97683 * 4 2 1 7 7 C 1.36928 * 120.00073 * 154.99577 * 6 4 2 8 8 H 1.08003 * 120.00305 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99992 * 179.97438 * 7 6 4 10 10 N 1.31616 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00140 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46864 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46817 * 120.00037 * 11 9 7 14 14 H 1.48497 * 109.47223 * 239.99852 * 11 9 7 15 15 C 1.55149 * 102.94499 * 141.60995 * 4 2 1 16 16 C 1.54916 * 101.58067 * 324.49963 * 15 4 2 17 17 N 1.47019 * 109.88255 * 238.90580 * 2 1 3 18 18 C 1.34779 * 125.65136 * 61.67944 * 17 2 1 19 19 O 1.21595 * 119.99786 * 355.96758 * 18 17 2 20 20 C 1.47532 * 120.00118 * 175.97498 * 18 17 2 21 21 C 1.39708 * 120.19523 * 35.87977 * 20 18 17 22 22 C 1.37782 * 119.91055 * 179.97438 * 21 20 18 23 23 C 1.38547 * 120.30184 * 359.97438 * 22 21 20 24 24 C 1.38057 * 120.38792 * 0.02562 * 23 22 21 25 25 C 1.38711 * 120.08670 * 359.74460 * 24 23 22 26 26 O 1.35651 * 120.15218 * 180.27714 * 25 24 23 27 27 H 1.08988 * 109.47397 * 179.64150 * 1 2 3 28 28 H 1.09003 * 109.46809 * 299.64418 * 1 2 3 29 29 H 1.09007 * 109.47126 * 59.64103 * 1 2 3 30 30 H 0.96998 * 119.99780 * 334.99603 * 6 4 2 31 31 H 0.97000 * 120.00720 * 179.97438 * 10 9 7 32 32 H 1.09001 * 111.00422 * 206.42507 * 15 4 2 33 33 H 1.09002 * 111.03619 * 82.58633 * 15 4 2 34 34 H 1.08995 * 110.36708 * 278.17080 * 16 15 4 35 35 H 1.09002 * 110.36283 * 155.84992 * 16 15 4 36 36 H 1.08005 * 120.04024 * 359.96125 * 21 20 18 37 37 H 1.07995 * 119.84918 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.80995 * 180.02562 * 23 22 21 39 39 H 1.08001 * 119.96064 * 180.02562 * 24 23 22 40 40 H 0.96704 * 113.99874 * 270.21016 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3052 -1.4459 1.6182 6 7 2.4555 0.1961 2.2875 7 6 2.4582 -0.1945 3.5999 8 1 2.1655 -1.1997 3.8648 9 6 2.8383 0.7013 4.5898 10 7 3.1956 1.9263 4.2671 11 14 2.8427 0.1683 6.3803 12 1 2.4037 -1.2470 6.4764 13 1 4.2151 0.2990 6.9322 14 1 1.9135 1.0291 7.1553 15 6 3.2876 -1.5142 0.6924 16 6 2.8145 -1.8794 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.8086 -0.3612 -2.4657 19 8 1.0840 0.5815 -2.7203 20 6 2.4452 -1.1189 -3.5599 21 6 2.6201 -2.5005 -3.4489 22 6 3.2149 -3.2024 -4.4745 23 6 3.6406 -2.5443 -5.6170 24 6 3.4740 -1.1793 -5.7398 25 6 2.8728 -0.4576 -4.7191 26 8 2.7034 0.8828 -4.8408 27 1 -0.3633 -1.0275 -0.0064 28 1 -0.3633 0.5083 0.8932 29 1 -0.3634 0.5194 -0.8868 30 1 2.7188 1.0988 2.0496 31 1 3.4608 2.5524 4.9588 32 1 3.4852 -2.4110 1.2796 33 1 4.1658 -0.8693 0.6603 34 1 2.1886 -2.7714 -0.7129 35 1 3.6716 -2.0338 -1.3923 36 1 2.2896 -3.0176 -2.5602 37 1 3.3492 -4.2704 -4.3879 38 1 4.1055 -3.1023 -6.4163 39 1 3.8080 -0.6734 -6.6336 40 1 3.4462 1.4049 -4.5078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985985259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:41 Heat of formation + Delta-G solvation = -27.762483 kcal Electronic energy + Delta-G solvation = -23174.344768 eV Core-core repulsion = 19761.870503 eV Total energy + Delta-G solvation = -3412.474265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63291 -39.11186 -37.21423 -36.78971 -34.16976 -32.27948 -31.09557 -30.62946 -30.01746 -28.92070 -25.30637 -24.28874 -23.33358 -22.50829 -22.04134 -20.32020 -19.31991 -18.26332 -17.30235 -17.11809 -16.28834 -15.96915 -15.81198 -14.94048 -14.76070 -14.34400 -14.15797 -13.76983 -13.60768 -13.40068 -13.06932 -12.75778 -12.52576 -12.39925 -12.11233 -11.98227 -11.77606 -11.51153 -11.17735 -11.06938 -10.87696 -10.78923 -10.57586 -10.25559 -10.04762 -9.79831 -9.54001 -9.21461 -8.97032 -8.90696 -8.38111 -7.05971 -5.84162 -3.14693 0.71136 1.01503 2.83889 3.10506 3.39178 3.44901 3.47257 3.51503 4.01347 4.46425 4.52653 4.60169 4.71985 4.98513 5.02729 5.16499 5.21538 5.31457 5.45587 5.47788 5.55021 5.62548 5.66174 5.78890 5.92861 5.98520 6.06701 6.09359 6.11470 6.14595 6.28017 6.44866 6.48083 6.56606 6.62717 6.75481 6.89165 7.51981 7.63692 7.74079 8.32456 8.36346 9.44690 9.98931 10.33690 11.38031 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.003612 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.469579 B = 7749.595407 C = 8089.502448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.077 0.923 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.094 3.906 17 N -0.605 5.605 18 C 0.567 3.433 19 O -0.521 6.521 20 C -0.151 4.151 21 C -0.078 4.078 22 C -0.138 4.138 23 C -0.086 4.086 24 C -0.156 4.156 25 C 0.159 3.841 26 O -0.481 6.481 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.386 0.614 31 H 0.256 0.744 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -10.675 -18.257 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.095 0.905 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.029 4.029 17 N -0.339 5.339 18 C 0.356 3.644 19 O -0.398 6.398 20 C -0.155 4.155 21 C -0.096 4.096 22 C -0.156 4.156 23 C -0.104 4.104 24 C -0.175 4.175 25 C 0.113 3.887 26 O -0.291 6.291 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.220 0.780 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.265 -10.335 -18.504 21.232 hybrid contribution 0.682 0.120 1.107 1.306 sum 1.947 -10.215 -17.396 20.268 Atomic orbital electron populations 1.22052 0.94819 1.01602 1.02814 1.21981 0.94549 0.96849 0.84279 0.90473 1.21250 0.93520 0.91603 0.87167 0.91411 1.42350 1.79238 1.11862 1.01923 1.19259 1.38386 0.96965 0.82894 0.90913 1.24767 1.01882 0.95855 0.98123 1.69671 1.51123 1.04648 1.32259 0.86112 0.77219 0.77643 0.85145 1.20480 1.21828 1.21797 1.23603 1.01445 1.01803 0.92984 1.22598 0.94689 0.88318 0.97282 1.48486 1.51992 1.28593 1.04786 1.17722 0.81629 0.83921 0.81157 1.90811 1.37075 1.28876 1.83000 1.20427 1.04779 0.94910 0.95352 1.21559 0.96249 0.92517 0.99277 1.21117 1.00258 1.00363 0.93867 1.21189 0.97736 0.93826 0.97645 1.21418 1.01420 0.94942 0.99674 1.18475 0.94588 0.84411 0.91244 1.84815 1.46224 1.13452 1.84631 0.93160 0.91136 0.91829 0.77984 0.93401 0.90493 0.90651 0.91627 0.90980 0.84452 0.85198 0.85307 0.84881 0.75049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.10 37.16 0.34 -2.33 16 2 C 0.13 2.27 3.23 -66.96 -0.22 2.05 16 3 H 0.08 1.55 7.72 -51.93 -0.40 1.15 16 4 C 0.18 3.33 3.14 -66.10 -0.21 3.12 16 5 H 0.07 1.28 7.80 -51.93 -0.41 0.87 16 6 N -0.71 -17.11 5.22 -51.66 -0.27 -17.38 16 7 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 11 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C -0.16 -2.50 6.77 -24.58 -0.17 -2.66 16 16 C 0.09 1.22 5.13 -2.53 -0.01 1.21 16 17 N -0.60 -9.50 3.06 -164.23 -0.50 -10.01 16 18 C 0.57 9.41 7.22 -12.47 -0.09 9.32 16 19 O -0.52 -10.47 14.87 -12.32 -0.18 -10.66 16 20 C -0.15 -2.03 5.53 -104.85 -0.58 -2.61 16 21 C -0.08 -0.82 7.90 -39.20 -0.31 -1.13 16 22 C -0.14 -1.16 10.02 -39.63 -0.40 -1.55 16 23 C -0.09 -0.69 10.03 -39.53 -0.40 -1.09 16 24 C -0.16 -1.50 9.98 -39.47 -0.39 -1.89 16 25 C 0.16 1.99 6.68 -38.69 -0.26 1.74 16 26 O -0.48 -6.30 12.15 -36.26 -0.44 -6.74 16 27 H 0.05 0.79 8.14 -51.94 -0.42 0.37 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.15 6.76 -51.92 -0.35 0.80 16 30 H 0.39 10.02 7.56 -40.82 -0.31 9.71 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 0.72 7.23 -51.93 -0.38 0.35 16 35 H 0.07 0.82 6.59 -51.93 -0.34 0.47 16 36 H 0.14 1.29 5.43 -52.48 -0.28 1.01 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.39 3.50 9.06 45.56 0.41 3.91 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -33.03 330.46 -8.21 -41.25 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -4.56 Total: 11.35 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.94 Total: -2.81 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.05 Total: -54.08 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.62 Total: -17.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.03 -8.21 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985985259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.484 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds