Wall clock time and date at job start Tue Mar 31 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.99964 * 2 1 4 4 C 1.54321 * 109.88560 * 121.09561 * 2 1 3 5 5 H 1.09003 * 110.71812 * 23.24443 * 4 2 1 6 6 N 1.46505 * 110.72191 * 259.97683 * 4 2 1 7 7 C 1.36928 * 120.00073 * 154.99577 * 6 4 2 8 8 H 1.08003 * 120.00305 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99992 * 179.97438 * 7 6 4 10 10 N 1.31616 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00140 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46864 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46817 * 120.00037 * 11 9 7 14 14 H 1.48497 * 109.47223 * 239.99852 * 11 9 7 15 15 C 1.55149 * 102.94499 * 141.60995 * 4 2 1 16 16 C 1.54916 * 101.58067 * 324.49963 * 15 4 2 17 17 N 1.47019 * 109.88255 * 238.90580 * 2 1 3 18 18 C 1.34779 * 125.65136 * 61.67944 * 17 2 1 19 19 O 1.21595 * 119.99786 * 355.96758 * 18 17 2 20 20 C 1.47532 * 120.00118 * 175.97498 * 18 17 2 21 21 C 1.39708 * 120.19523 * 35.87977 * 20 18 17 22 22 C 1.37782 * 119.91055 * 179.97438 * 21 20 18 23 23 C 1.38547 * 120.30184 * 359.97438 * 22 21 20 24 24 C 1.38057 * 120.38792 * 0.02562 * 23 22 21 25 25 C 1.38711 * 120.08670 * 359.74460 * 24 23 22 26 26 O 1.35651 * 120.15218 * 180.27714 * 25 24 23 27 27 H 1.08988 * 109.47397 * 179.64150 * 1 2 3 28 28 H 1.09003 * 109.46809 * 299.64418 * 1 2 3 29 29 H 1.09007 * 109.47126 * 59.64103 * 1 2 3 30 30 H 0.96998 * 119.99780 * 334.99603 * 6 4 2 31 31 H 0.97000 * 120.00720 * 179.97438 * 10 9 7 32 32 H 1.09001 * 111.00422 * 206.42507 * 15 4 2 33 33 H 1.09002 * 111.03619 * 82.58633 * 15 4 2 34 34 H 1.08995 * 110.36708 * 278.17080 * 16 15 4 35 35 H 1.09002 * 110.36283 * 155.84992 * 16 15 4 36 36 H 1.08005 * 120.04024 * 359.96125 * 21 20 18 37 37 H 1.07995 * 119.84918 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.80995 * 180.02562 * 23 22 21 39 39 H 1.08001 * 119.96064 * 180.02562 * 24 23 22 40 40 H 0.96704 * 113.99874 * 270.21016 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3052 -1.4459 1.6182 6 7 2.4555 0.1961 2.2875 7 6 2.4582 -0.1945 3.5999 8 1 2.1655 -1.1997 3.8648 9 6 2.8383 0.7013 4.5898 10 7 3.1956 1.9263 4.2671 11 14 2.8427 0.1683 6.3803 12 1 2.4037 -1.2470 6.4764 13 1 4.2151 0.2990 6.9322 14 1 1.9135 1.0291 7.1553 15 6 3.2876 -1.5142 0.6924 16 6 2.8145 -1.8794 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.8086 -0.3612 -2.4657 19 8 1.0840 0.5815 -2.7203 20 6 2.4452 -1.1189 -3.5599 21 6 2.6201 -2.5005 -3.4489 22 6 3.2149 -3.2024 -4.4745 23 6 3.6406 -2.5443 -5.6170 24 6 3.4740 -1.1793 -5.7398 25 6 2.8728 -0.4576 -4.7191 26 8 2.7034 0.8828 -4.8408 27 1 -0.3633 -1.0275 -0.0064 28 1 -0.3633 0.5083 0.8932 29 1 -0.3634 0.5194 -0.8868 30 1 2.7188 1.0988 2.0496 31 1 3.4608 2.5524 4.9588 32 1 3.4852 -2.4110 1.2796 33 1 4.1658 -0.8693 0.6603 34 1 2.1886 -2.7714 -0.7129 35 1 3.6716 -2.0338 -1.3923 36 1 2.2896 -3.0176 -2.5602 37 1 3.3492 -4.2704 -4.3879 38 1 4.1055 -3.1023 -6.4163 39 1 3.8080 -0.6734 -6.6336 40 1 3.4462 1.4049 -4.5078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985985259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:40 Heat of formation + Delta-G solvation = -50.663575 kcal Electronic energy + Delta-G solvation = -23175.337834 eV Core-core repulsion = 19761.870503 eV Total energy + Delta-G solvation = -3413.467331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72536 -40.18635 -38.55617 -37.67385 -35.92621 -33.69068 -32.58499 -31.82547 -30.87499 -30.37639 -26.92627 -25.36339 -24.93681 -23.43997 -23.16501 -21.70504 -20.57337 -19.25647 -19.08867 -18.25269 -17.58251 -16.93067 -16.77627 -16.48624 -15.95475 -15.51914 -15.43605 -15.22658 -14.82109 -14.77805 -14.53904 -14.11835 -13.62715 -13.39657 -13.23078 -13.18103 -13.07294 -12.94123 -12.70688 -12.57339 -12.46441 -12.17071 -12.06689 -11.76359 -11.64357 -11.53930 -10.95889 -10.79170 -10.00717 -9.78942 -9.57167 -9.03130 -7.94021 -5.24224 -0.11980 0.29091 1.49889 1.50652 1.60506 1.71495 1.90711 2.57572 2.69096 3.22383 3.34563 3.45159 3.69237 3.78198 3.92039 4.00918 4.14211 4.16832 4.30835 4.37978 4.39523 4.46118 4.50255 4.64393 4.67050 4.74170 4.88310 4.95204 5.02196 5.18605 5.21941 5.26298 5.32123 5.38291 5.44957 5.46316 5.55230 5.83128 6.26080 6.50666 6.73507 7.10405 7.32618 8.04027 8.28128 9.29749 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.003612 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.469579 B = 7749.595407 C = 8089.502448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.043 0.957 4 C 0.172 3.828 5 H 0.075 0.925 6 N -0.729 5.729 7 C -0.236 4.236 8 H 0.085 0.915 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.260 1.260 13 H -0.296 1.296 14 H -0.298 1.298 15 C -0.148 4.148 16 C 0.102 3.898 17 N -0.604 5.604 18 C 0.564 3.436 19 O -0.570 6.570 20 C -0.181 4.181 21 C -0.079 4.079 22 C -0.130 4.130 23 C -0.073 4.073 24 C -0.158 4.158 25 C 0.135 3.865 26 O -0.505 6.505 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.370 0.630 31 H 0.250 0.750 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 -14.671 -19.651 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.061 0.939 4 C 0.062 3.938 5 H 0.093 0.907 6 N -0.367 5.367 7 C -0.367 4.367 8 H 0.103 0.897 9 C -0.268 4.268 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.184 1.184 13 H -0.223 1.223 14 H -0.226 1.226 15 C -0.189 4.189 16 C -0.020 4.020 17 N -0.337 5.337 18 C 0.355 3.645 19 O -0.450 6.450 20 C -0.185 4.185 21 C -0.097 4.097 22 C -0.148 4.148 23 C -0.091 4.091 24 C -0.176 4.176 25 C 0.089 3.911 26 O -0.317 6.317 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.202 0.798 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.168 0.832 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.037 -14.412 -19.925 24.675 hybrid contribution 0.456 1.299 1.394 1.960 sum 2.493 -13.113 -18.530 22.837 Atomic orbital electron populations 1.21939 0.94379 1.02420 1.01529 1.21688 0.94830 0.95413 0.85292 0.93871 1.21437 0.95068 0.91027 0.86265 0.90670 1.42525 1.79617 1.12113 1.02479 1.19682 1.36042 0.97112 0.83903 0.89697 1.25579 1.02944 0.96063 1.02202 1.69839 1.53424 1.05934 1.33058 0.85073 0.76540 0.77948 0.80181 1.18447 1.22288 1.22591 1.23418 0.98910 1.01459 0.95071 1.22774 0.95779 0.88053 0.95386 1.48504 1.52009 1.29106 1.04065 1.18336 0.80909 0.83462 0.81784 1.90773 1.39328 1.31198 1.83733 1.20323 1.07169 0.96189 0.94779 1.21741 0.96254 0.91122 1.00628 1.21545 0.98400 1.01969 0.92840 1.21681 0.95944 0.93114 0.98338 1.21662 1.00808 0.95850 0.99290 1.18841 0.95940 0.84202 0.92123 1.84770 1.47511 1.14562 1.84863 0.91174 0.92252 0.93224 0.79776 0.94134 0.88756 0.92661 0.88295 0.88574 0.83245 0.81643 0.81629 0.83174 0.73842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 9.10 71.98 0.66 -4.44 16 2 C 0.13 4.86 3.23 45.34 0.15 5.00 16 3 H 0.04 1.87 7.72 -2.38 -0.02 1.85 16 4 C 0.17 6.43 3.14 46.18 0.14 6.57 16 5 H 0.08 2.72 7.80 -2.39 -0.02 2.70 16 6 N -0.73 -35.65 5.22 -317.34 -1.66 -37.31 16 7 C -0.24 -12.50 9.96 84.03 0.84 -11.66 16 8 H 0.09 4.22 7.83 -2.91 -0.02 4.19 16 9 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 10 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 11 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 13 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 15 C -0.15 -4.46 6.77 31.99 0.22 -4.24 16 16 C 0.10 2.36 5.13 86.86 0.45 2.80 16 17 N -0.60 -18.74 3.06 -791.77 -2.43 -21.17 16 18 C 0.56 18.96 7.22 86.69 0.63 19.58 16 19 O -0.57 -24.08 14.87 12.82 0.19 -23.89 16 20 C -0.18 -4.68 5.53 -20.01 -0.11 -4.79 16 21 C -0.08 -1.40 7.90 22.52 0.18 -1.22 16 22 C -0.13 -1.53 10.02 22.24 0.22 -1.31 16 23 C -0.07 -0.83 10.03 22.30 0.22 -0.61 16 24 C -0.16 -2.61 9.98 22.34 0.22 -2.39 16 25 C 0.13 3.29 6.68 22.85 0.15 3.44 16 26 O -0.50 -13.74 12.15 -72.83 -0.88 -14.62 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.88 6.76 -2.38 -0.02 1.86 16 30 H 0.37 20.18 7.56 -92.71 -0.70 19.48 16 31 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.10 1.72 7.23 -2.39 -0.02 1.70 16 35 H 0.10 1.84 6.59 -2.39 -0.02 1.83 16 36 H 0.15 2.17 5.43 -2.91 -0.02 2.15 16 37 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.40 7.81 9.06 -74.05 -0.67 7.14 16 Total: -1.00 -75.30 330.46 1.66 -73.63 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.30 Total: 32.25 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 4.43 Total: 2.96 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -3.80 Total: -117.38 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.69 Total: -38.52 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.30 1.66 -73.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985985259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.971 kcal (2) G-P(sol) polarization free energy of solvation -75.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds