Wall clock time and date at job start Tue Mar 31 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99806 * 2 1 4 4 C 1.54328 * 109.88264 * 121.10107 * 2 1 3 5 5 H 1.09003 * 110.71498 * 260.15002 * 4 2 1 6 6 N 1.46493 * 110.71817 * 23.24230 * 4 2 1 7 7 C 1.36942 * 119.99730 * 202.55780 * 6 4 2 8 8 H 1.08000 * 120.00200 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99731 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99468 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00244 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47276 * 270.00183 * 11 9 7 13 13 H 1.48501 * 109.46957 * 30.00258 * 11 9 7 14 14 H 1.48500 * 109.46815 * 150.00030 * 11 9 7 15 15 C 1.55159 * 103.10048 * 141.69783 * 4 2 1 16 16 C 1.54903 * 101.58226 * 324.40477 * 15 4 2 17 17 N 1.47429 * 104.83423 * 37.01576 * 16 15 4 18 18 C 1.34770 * 125.65168 * 155.82797 * 17 16 15 19 19 O 1.21598 * 119.99861 * 175.96626 * 18 17 16 20 20 C 1.47531 * 120.00116 * 355.97260 * 18 17 16 21 21 C 1.39712 * 120.19095 * 35.89281 * 20 18 17 22 22 C 1.37787 * 119.91032 * 179.97438 * 21 20 18 23 23 C 1.38548 * 120.29539 * 359.97438 * 22 21 20 24 24 C 1.38047 * 120.39705 * 0.02562 * 23 22 21 25 25 C 1.38713 * 120.08022 * 359.74231 * 24 23 22 26 26 O 1.35659 * 120.14903 * 180.27788 * 25 24 23 27 27 H 1.09003 * 109.46942 * 298.90101 * 1 2 3 28 28 H 1.09003 * 109.47332 * 58.89883 * 1 2 3 29 29 H 1.08997 * 109.47351 * 178.90168 * 1 2 3 30 30 H 0.96998 * 120.00609 * 22.56180 * 6 4 2 31 31 H 0.97005 * 119.99810 * 179.97438 * 10 9 7 32 32 H 1.08998 * 111.00095 * 82.48126 * 15 4 2 33 33 H 1.08997 * 111.00046 * 206.33294 * 15 4 2 34 34 H 1.08999 * 110.36703 * 155.84516 * 16 15 4 35 35 H 1.08994 * 110.37105 * 278.17186 * 16 15 4 36 36 H 1.08002 * 120.04555 * 359.95803 * 21 20 18 37 37 H 1.07993 * 119.84972 * 180.02562 * 22 21 20 38 38 H 1.08003 * 119.80186 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.96773 * 179.97438 * 24 23 22 40 40 H 0.96700 * 113.99901 * 270.22655 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7497 1.2427 5 1 2.3500 -0.0462 2.0212 6 7 1.0471 -1.6856 1.7473 7 6 1.0905 -2.1007 3.0516 8 1 1.8674 -1.7378 3.7082 9 6 0.1360 -2.9880 3.5296 10 7 0.1775 -3.3866 4.7833 11 14 -1.2073 -3.6162 2.3937 12 1 -2.3788 -2.7063 2.4618 13 1 -0.6960 -3.6615 1.0002 14 1 -1.6147 -4.9803 2.8160 15 6 3.2897 -1.5142 0.6967 16 6 2.8200 -1.8832 -0.7326 17 7 2.0352 -0.7197 -1.1842 18 6 1.8161 -0.3701 -2.4671 19 8 1.0903 0.5707 -2.7255 20 6 2.4568 -1.1288 -3.5582 21 6 2.6337 -2.5099 -3.4439 22 6 3.2323 -3.2129 -4.4666 23 6 3.6597 -2.5564 -5.6093 24 6 3.4912 -1.1921 -5.7354 25 6 2.8862 -0.4693 -4.7177 26 8 2.7147 0.8706 -4.8425 27 1 -0.3633 0.4967 0.8997 28 1 -0.3634 0.5308 -0.8800 29 1 -0.3634 -1.0274 -0.0197 30 1 0.3492 -2.0113 1.1577 31 1 -0.4898 -4.0063 5.1176 32 1 4.1667 -0.8678 0.6651 33 1 3.4870 -2.4094 1.2864 34 1 3.6787 -2.0380 -1.3859 35 1 2.1952 -2.7759 -0.7080 36 1 2.3020 -3.0259 -2.5549 37 1 3.3682 -4.2806 -4.3774 38 1 4.1276 -3.1154 -6.4063 39 1 3.8273 -0.6873 -6.6291 40 1 3.4558 1.3947 -4.5091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985985265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:43 Heat of formation + Delta-G solvation = -17.562486 kcal Electronic energy + Delta-G solvation = -23596.341289 eV Core-core repulsion = 20184.309329 eV Total energy + Delta-G solvation = -3412.031960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67539 -39.21410 -37.34514 -36.84365 -34.16510 -32.26379 -31.17644 -30.77827 -30.03906 -29.12857 -25.59658 -24.29969 -23.34138 -22.64100 -22.07085 -20.14000 -19.01306 -18.28891 -17.94825 -17.08600 -16.44040 -15.97984 -15.90961 -15.00664 -14.65058 -14.40736 -14.26647 -13.94500 -13.65070 -13.39901 -13.11495 -12.70710 -12.57561 -12.44080 -12.34347 -11.96430 -11.80275 -11.57747 -11.17832 -11.14586 -10.87664 -10.83696 -10.68008 -10.33320 -10.13858 -9.65066 -9.55655 -9.22112 -9.00921 -8.92606 -8.43022 -7.37029 -5.85177 -3.21596 0.69644 1.00800 2.81483 3.07968 3.31013 3.35137 3.40798 3.49038 3.97379 4.44762 4.51622 4.60584 4.72678 4.92852 5.01364 5.13121 5.16130 5.19135 5.38724 5.46050 5.52069 5.56469 5.62270 5.67293 5.74005 5.93690 5.99198 6.06253 6.14836 6.16873 6.25421 6.33258 6.46487 6.48345 6.61356 6.67037 6.78090 7.47333 7.69485 7.90797 8.31293 8.33949 9.11420 9.83829 10.02803 11.32787 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023377 B = 0.004519 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.450264 B = 6194.514195 C = 6538.296372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.077 0.923 4 C 0.177 3.823 5 H 0.079 0.921 6 N -0.739 5.739 7 C -0.248 4.248 8 H 0.093 0.907 9 C 0.011 3.989 10 N -0.930 5.930 11 Si 0.878 3.122 12 H -0.282 1.282 13 H -0.279 1.279 14 H -0.290 1.290 15 C -0.159 4.159 16 C 0.099 3.901 17 N -0.607 5.607 18 C 0.568 3.432 19 O -0.523 6.523 20 C -0.152 4.152 21 C -0.077 4.077 22 C -0.136 4.136 23 C -0.085 4.085 24 C -0.156 4.156 25 C 0.158 3.842 26 O -0.480 6.480 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.365 0.635 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.196 2.764 -19.125 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.095 0.905 4 C 0.066 3.934 5 H 0.096 0.904 6 N -0.383 5.383 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.577 5.577 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.205 1.205 14 H -0.216 1.216 15 C -0.200 4.200 16 C -0.023 4.023 17 N -0.341 5.341 18 C 0.356 3.644 19 O -0.400 6.400 20 C -0.155 4.155 21 C -0.095 4.095 22 C -0.154 4.154 23 C -0.103 4.103 24 C -0.175 4.175 25 C 0.111 3.889 26 O -0.290 6.290 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.200 0.800 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.275 3.106 -19.305 21.641 hybrid contribution -0.554 -0.624 -0.541 0.994 sum 8.721 2.483 -19.846 21.819 Atomic orbital electron populations 1.21979 0.94616 1.02174 1.02441 1.22102 0.95161 0.95908 0.84480 0.90497 1.21170 0.88637 0.91390 0.92227 0.90358 1.42916 1.31612 1.53176 1.10569 1.19059 1.11420 1.21639 0.85602 0.88960 1.24631 0.98632 0.99532 0.95779 1.69693 1.37216 1.37122 1.13709 0.86665 0.83318 0.78667 0.80482 1.20868 1.20522 1.21626 1.23510 0.99195 1.02676 0.94599 1.22540 0.94595 0.88605 0.96593 1.48719 1.51986 1.28667 1.04735 1.17723 0.81567 0.83901 0.81172 1.90803 1.37028 1.29212 1.82955 1.20409 1.04810 0.94912 0.95394 1.21617 0.95952 0.92563 0.99410 1.21144 1.00035 1.00461 0.93810 1.21196 0.97719 0.93835 0.97592 1.21401 1.01501 0.94939 0.99653 1.18454 0.94803 0.84329 0.91277 1.84831 1.46195 1.13482 1.84525 0.90994 0.91991 0.92695 0.79960 0.92948 0.91596 0.88952 0.91070 0.91254 0.84368 0.85115 0.85274 0.84895 0.75302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.47 37.16 0.31 -2.44 16 2 C 0.13 2.10 3.47 -66.69 -0.23 1.87 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.18 3.14 3.46 -66.10 -0.23 2.91 16 5 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 6 N -0.74 -16.25 4.41 -51.65 -0.23 -16.48 16 7 C -0.25 -6.55 10.45 -15.06 -0.16 -6.71 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 10 N -0.93 -28.26 13.97 55.49 0.78 -27.48 16 11 Si 0.88 21.61 27.73 -169.99 -4.71 16.90 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 C -0.16 -2.38 6.77 -24.58 -0.17 -2.55 16 16 C 0.10 1.38 5.11 -2.53 -0.01 1.36 16 17 N -0.61 -9.47 3.08 -163.88 -0.50 -9.97 16 18 C 0.57 9.33 7.22 -12.47 -0.09 9.24 16 19 O -0.52 -10.24 14.90 -12.32 -0.18 -10.43 16 20 C -0.15 -2.07 5.53 -104.85 -0.58 -2.65 16 21 C -0.08 -0.89 7.90 -39.20 -0.31 -1.19 16 22 C -0.14 -1.25 10.02 -39.63 -0.40 -1.65 16 23 C -0.09 -0.71 10.03 -39.54 -0.40 -1.11 16 24 C -0.16 -1.49 9.98 -39.48 -0.39 -1.89 16 25 C 0.16 1.94 6.68 -38.69 -0.26 1.68 16 26 O -0.48 -5.99 12.15 -36.28 -0.44 -6.43 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.13 6.81 -51.93 -0.35 0.78 16 29 H 0.05 1.05 6.21 -51.93 -0.32 0.73 16 30 H 0.36 8.16 3.44 -40.82 -0.14 8.02 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.07 0.82 6.59 -51.93 -0.34 0.48 16 35 H 0.07 1.02 7.23 -51.93 -0.38 0.64 16 36 H 0.14 1.56 5.43 -52.49 -0.28 1.28 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.39 3.07 9.06 45.56 0.41 3.48 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -33.38 323.57 -7.80 -41.18 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.38 Total: 10.74 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -3.00 Total: -2.91 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.04 Total: -53.93 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.62 Total: -16.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.38 -7.80 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985985265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.617 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds