Wall clock time and date at job start Tue Mar 31 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99806 * 2 1 4 4 C 1.54328 * 109.88264 * 121.10107 * 2 1 3 5 5 H 1.09003 * 110.71498 * 260.15002 * 4 2 1 6 6 N 1.46493 * 110.71817 * 23.24230 * 4 2 1 7 7 C 1.36942 * 119.99730 * 202.55780 * 6 4 2 8 8 H 1.08000 * 120.00200 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99731 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99468 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00244 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47276 * 270.00183 * 11 9 7 13 13 H 1.48501 * 109.46957 * 30.00258 * 11 9 7 14 14 H 1.48500 * 109.46815 * 150.00030 * 11 9 7 15 15 C 1.55159 * 103.10048 * 141.69783 * 4 2 1 16 16 C 1.54903 * 101.58226 * 324.40477 * 15 4 2 17 17 N 1.47429 * 104.83423 * 37.01576 * 16 15 4 18 18 C 1.34770 * 125.65168 * 155.82797 * 17 16 15 19 19 O 1.21598 * 119.99861 * 175.96626 * 18 17 16 20 20 C 1.47531 * 120.00116 * 355.97260 * 18 17 16 21 21 C 1.39712 * 120.19095 * 35.89281 * 20 18 17 22 22 C 1.37787 * 119.91032 * 179.97438 * 21 20 18 23 23 C 1.38548 * 120.29539 * 359.97438 * 22 21 20 24 24 C 1.38047 * 120.39705 * 0.02562 * 23 22 21 25 25 C 1.38713 * 120.08022 * 359.74231 * 24 23 22 26 26 O 1.35659 * 120.14903 * 180.27788 * 25 24 23 27 27 H 1.09003 * 109.46942 * 298.90101 * 1 2 3 28 28 H 1.09003 * 109.47332 * 58.89883 * 1 2 3 29 29 H 1.08997 * 109.47351 * 178.90168 * 1 2 3 30 30 H 0.96998 * 120.00609 * 22.56180 * 6 4 2 31 31 H 0.97005 * 119.99810 * 179.97438 * 10 9 7 32 32 H 1.08998 * 111.00095 * 82.48126 * 15 4 2 33 33 H 1.08997 * 111.00046 * 206.33294 * 15 4 2 34 34 H 1.08999 * 110.36703 * 155.84516 * 16 15 4 35 35 H 1.08994 * 110.37105 * 278.17186 * 16 15 4 36 36 H 1.08002 * 120.04555 * 359.95803 * 21 20 18 37 37 H 1.07993 * 119.84972 * 180.02562 * 22 21 20 38 38 H 1.08003 * 119.80186 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.96773 * 179.97438 * 24 23 22 40 40 H 0.96700 * 113.99901 * 270.22655 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7497 1.2427 5 1 2.3500 -0.0462 2.0212 6 7 1.0471 -1.6856 1.7473 7 6 1.0905 -2.1007 3.0516 8 1 1.8674 -1.7378 3.7082 9 6 0.1360 -2.9880 3.5296 10 7 0.1775 -3.3866 4.7833 11 14 -1.2073 -3.6162 2.3937 12 1 -2.3788 -2.7063 2.4618 13 1 -0.6960 -3.6615 1.0002 14 1 -1.6147 -4.9803 2.8160 15 6 3.2897 -1.5142 0.6967 16 6 2.8200 -1.8832 -0.7326 17 7 2.0352 -0.7197 -1.1842 18 6 1.8161 -0.3701 -2.4671 19 8 1.0903 0.5707 -2.7255 20 6 2.4568 -1.1288 -3.5582 21 6 2.6337 -2.5099 -3.4439 22 6 3.2323 -3.2129 -4.4666 23 6 3.6597 -2.5564 -5.6093 24 6 3.4912 -1.1921 -5.7354 25 6 2.8862 -0.4693 -4.7177 26 8 2.7147 0.8706 -4.8425 27 1 -0.3633 0.4967 0.8997 28 1 -0.3634 0.5308 -0.8800 29 1 -0.3634 -1.0274 -0.0197 30 1 0.3492 -2.0113 1.1577 31 1 -0.4898 -4.0063 5.1176 32 1 4.1667 -0.8678 0.6651 33 1 3.4870 -2.4094 1.2864 34 1 3.6787 -2.0380 -1.3859 35 1 2.1952 -2.7759 -0.7080 36 1 2.3020 -3.0259 -2.5549 37 1 3.3682 -4.2806 -4.3774 38 1 4.1276 -3.1154 -6.4063 39 1 3.8273 -0.6873 -6.6291 40 1 3.4558 1.3947 -4.5091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985985265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:42 Heat of formation + Delta-G solvation = -40.374577 kcal Electronic energy + Delta-G solvation = -23597.330495 eV Core-core repulsion = 20184.309329 eV Total energy + Delta-G solvation = -3413.021166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76405 -40.27456 -38.65996 -37.68951 -35.86157 -33.80184 -32.63416 -32.00810 -30.92113 -30.51400 -27.01061 -25.45629 -25.05070 -23.52628 -23.17504 -21.40165 -20.34454 -19.83887 -19.16096 -18.25102 -17.72269 -16.88597 -16.84997 -16.46062 -16.11399 -15.70697 -15.34174 -15.21454 -14.94512 -14.81528 -14.38918 -14.31603 -13.94355 -13.44857 -13.29960 -13.22206 -13.15584 -13.01262 -12.64361 -12.58712 -12.45479 -12.27228 -11.97938 -11.79299 -11.64808 -11.55450 -10.99662 -10.81255 -10.03110 -9.80793 -9.59547 -9.32033 -8.01836 -5.34180 -0.14306 0.26204 1.34171 1.37489 1.42856 1.72397 1.89423 2.46211 2.66425 3.20272 3.26882 3.39454 3.53949 3.66138 3.86301 3.91388 4.11415 4.14417 4.22105 4.29310 4.36182 4.43351 4.48727 4.62637 4.71073 4.74700 4.86896 4.90918 4.99815 5.15481 5.20276 5.24846 5.29985 5.33032 5.40397 5.44493 5.79955 5.80515 6.22276 6.47801 6.76190 7.07049 7.09195 7.83099 8.01106 9.19541 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023377 B = 0.004519 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.450264 B = 6194.514195 C = 6538.296372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.131 3.869 3 H 0.088 0.912 4 C 0.168 3.832 5 H 0.078 0.922 6 N -0.741 5.741 7 C -0.221 4.221 8 H 0.068 0.932 9 C -0.053 4.053 10 N -0.980 5.980 11 Si 0.937 3.063 12 H -0.285 1.285 13 H -0.259 1.259 14 H -0.295 1.295 15 C -0.147 4.147 16 C 0.104 3.896 17 N -0.606 5.606 18 C 0.566 3.434 19 O -0.565 6.565 20 C -0.180 4.180 21 C -0.085 4.085 22 C -0.133 4.133 23 C -0.071 4.071 24 C -0.155 4.155 25 C 0.142 3.858 26 O -0.501 6.501 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.365 0.635 31 H 0.257 0.743 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.790 1.913 -22.201 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.027 3.973 3 H 0.106 0.894 4 C 0.059 3.941 5 H 0.096 0.904 6 N -0.385 5.385 7 C -0.351 4.351 8 H 0.086 0.914 9 C -0.245 4.245 10 N -0.631 5.631 11 Si 0.766 3.234 12 H -0.211 1.211 13 H -0.184 1.184 14 H -0.222 1.222 15 C -0.188 4.188 16 C -0.017 4.017 17 N -0.339 5.339 18 C 0.357 3.643 19 O -0.445 6.445 20 C -0.184 4.184 21 C -0.103 4.103 22 C -0.150 4.150 23 C -0.089 4.089 24 C -0.173 4.173 25 C 0.096 3.904 26 O -0.313 6.313 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.200 0.800 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 10.922 2.276 -22.426 25.048 hybrid contribution -0.933 -0.281 0.348 1.034 sum 9.990 1.995 -22.078 24.315 Atomic orbital electron populations 1.21891 0.95697 1.00993 1.01972 1.21959 0.94259 0.96459 0.84578 0.89424 1.21378 0.88906 0.91098 0.92761 0.90448 1.42881 1.32846 1.53836 1.08969 1.19037 1.09516 1.19692 0.86901 0.91385 1.25270 1.01331 1.00883 0.97040 1.69845 1.38591 1.38843 1.15795 0.85691 0.80526 0.77495 0.79684 1.21137 1.18388 1.22209 1.23373 0.98576 1.02082 0.94765 1.22591 0.95264 0.87603 0.96267 1.48733 1.51904 1.28880 1.04389 1.18237 0.80898 0.83480 0.81690 1.90769 1.38931 1.31237 1.83564 1.20319 1.07082 0.95756 0.95237 1.21673 0.96579 0.91728 1.00359 1.21493 0.98669 1.01753 0.93135 1.21656 0.95942 0.93387 0.97947 1.21676 1.00638 0.95578 0.99428 1.18741 0.95562 0.84354 0.91731 1.84779 1.47654 1.14185 1.84726 0.91255 0.92638 0.94084 0.79987 0.93426 0.88891 0.90190 0.88094 0.91863 0.84622 0.82372 0.81618 0.82750 0.73594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 8.47 71.98 0.61 -4.64 16 2 C 0.13 4.24 3.47 45.25 0.16 4.40 16 3 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 4 C 0.17 5.80 3.46 46.18 0.16 5.96 16 5 H 0.08 2.70 8.11 -2.39 -0.02 2.69 16 6 N -0.74 -32.23 4.41 -317.32 -1.40 -33.63 16 7 C -0.22 -11.77 10.45 84.03 0.88 -10.89 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 C -0.05 -3.04 5.50 84.86 0.47 -2.57 16 10 N -0.98 -61.03 13.97 21.65 0.30 -60.72 16 11 Si 0.94 44.99 27.73 68.60 1.90 46.89 16 12 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.26 -11.38 6.52 99.48 0.65 -10.73 16 14 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 15 C -0.15 -4.14 6.77 31.98 0.22 -3.92 16 16 C 0.10 2.68 5.11 86.85 0.44 3.12 16 17 N -0.61 -18.15 3.08 -790.66 -2.44 -20.59 16 18 C 0.57 18.24 7.22 86.70 0.63 18.86 16 19 O -0.57 -22.28 14.90 12.80 0.19 -22.09 16 20 C -0.18 -4.65 5.53 -20.01 -0.11 -4.76 16 21 C -0.08 -1.73 7.90 22.52 0.18 -1.55 16 22 C -0.13 -1.88 10.02 22.24 0.22 -1.65 16 23 C -0.07 -0.86 10.03 22.30 0.22 -0.63 16 24 C -0.15 -2.43 9.98 22.34 0.22 -2.21 16 25 C 0.14 3.25 6.68 22.84 0.15 3.40 16 26 O -0.50 -12.10 12.15 -72.92 -0.89 -12.99 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 2.04 6.81 -2.39 -0.02 2.02 16 29 H 0.04 1.55 6.21 -2.39 -0.01 1.54 16 30 H 0.36 15.99 3.44 -92.71 -0.32 15.68 16 31 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.10 2.03 6.59 -2.39 -0.02 2.01 16 35 H 0.06 1.73 7.23 -2.39 -0.02 1.71 16 36 H 0.14 2.76 5.43 -2.91 -0.02 2.74 16 37 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.41 6.12 9.06 -74.06 -0.67 5.45 16 Total: -1.00 -73.88 323.57 2.15 -71.72 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.03 Total: 28.48 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 4.45 Total: 2.92 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -3.53 Total: -114.94 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.70 Total: -35.08 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Total: -73.88 2.15 -71.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985985265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.349 kcal (2) G-P(sol) polarization free energy of solvation -73.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds