Wall clock time and date at job start Tue Mar 31 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.99635 * 2 1 4 4 C 1.54327 * 109.99507 * 238.96261 * 2 1 3 5 5 H 1.09006 * 110.66479 * 337.04413 * 4 2 1 6 6 N 1.46499 * 110.85383 * 100.19556 * 4 2 1 7 7 C 1.36935 * 119.99928 * 200.14885 * 6 4 2 8 8 H 1.07995 * 120.00491 * 0.02562 * 7 6 4 9 9 C 1.38811 * 119.99839 * 179.97438 * 7 6 4 10 10 N 1.31623 * 120.00485 * 180.02562 * 9 7 6 11 11 Si 1.86810 * 119.99992 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46796 * 90.00050 * 11 9 7 13 13 H 1.48503 * 109.46890 * 210.00061 * 11 9 7 14 14 H 1.48499 * 109.47057 * 330.00043 * 11 9 7 15 15 C 1.55160 * 103.02267 * 218.66857 * 4 2 1 16 16 C 1.54912 * 101.58128 * 35.30018 * 15 4 2 17 17 N 1.47021 * 109.88405 * 121.08940 * 2 1 3 18 18 C 1.34779 * 125.65039 * 298.39986 * 17 2 1 19 19 O 1.21584 * 119.99882 * 3.71873 * 18 17 2 20 20 C 1.47540 * 119.99834 * 183.71784 * 18 17 2 21 21 C 1.39710 * 120.19050 * 324.11524 * 20 18 17 22 22 C 1.37787 * 119.90522 * 180.29872 * 21 20 18 23 23 C 1.38547 * 120.29975 * 359.72600 * 22 21 20 24 24 C 1.38052 * 120.39211 * 0.02562 * 23 22 21 25 25 C 1.38714 * 120.08357 * 0.02562 * 24 23 22 26 26 O 1.35649 * 120.14986 * 179.97438 * 25 24 23 27 27 H 1.09006 * 109.47045 * 300.36039 * 1 2 3 28 28 H 1.08998 * 109.47325 * 60.35956 * 1 2 3 29 29 H 1.09004 * 109.47130 * 180.36440 * 1 2 3 30 30 H 0.97005 * 119.99518 * 20.14635 * 6 4 2 31 31 H 0.96992 * 120.00483 * 179.97438 * 10 9 7 32 32 H 1.09008 * 110.99644 * 277.23021 * 15 4 2 33 33 H 1.08997 * 111.00578 * 153.37890 * 15 4 2 34 34 H 1.08997 * 110.36243 * 204.15510 * 16 15 4 35 35 H 1.08998 * 110.36456 * 81.83311 * 16 15 4 36 36 H 1.07998 * 120.04827 * 0.02562 * 21 20 18 37 37 H 1.08002 * 119.85124 * 179.69989 * 22 21 20 38 38 H 1.08000 * 119.80516 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.95841 * 179.97438 * 24 23 22 40 40 H 0.96700 * 114.00142 * 89.99896 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0577 -0.7477 -1.2426 5 1 1.3067 -1.4405 -1.6224 6 7 2.4637 0.1968 -2.2863 7 6 2.5655 -0.2214 -3.5862 8 1 2.3461 -1.2473 -3.8422 9 6 2.9497 0.6737 -4.5751 10 7 3.0471 0.2720 -5.8248 11 14 3.3286 2.4486 -4.1325 12 1 4.7704 2.5792 -3.8015 13 1 3.0039 3.3264 -5.2854 14 1 2.5128 2.8510 -2.9587 15 6 3.2864 -1.5184 -0.6913 16 6 2.8099 -1.8824 0.7370 17 7 2.0300 -0.7139 1.1840 18 6 1.8073 -0.3618 2.4658 19 8 1.0861 0.5834 2.7200 20 6 2.4388 -1.1235 3.5603 21 6 2.6082 -2.5057 3.4478 22 6 3.1931 -3.2121 4.4761 23 6 3.6196 -2.5570 5.6201 24 6 3.4629 -1.1909 5.7421 25 6 2.8753 -0.4641 4.7172 26 8 2.7202 0.8783 4.8359 27 1 -0.3633 0.5194 0.8868 28 1 -0.3634 0.5082 -0.8932 29 1 -0.3633 -1.0277 0.0065 30 1 2.6604 1.1184 -2.0563 31 1 3.3152 0.8976 -6.5159 32 1 4.1670 -0.8767 -0.6578 33 1 3.4807 -2.4155 -1.2790 34 1 3.6655 -2.0410 1.3934 35 1 2.1801 -2.7717 0.7117 36 1 2.2773 -3.0204 2.5579 37 1 3.3192 -4.2812 4.3903 38 1 4.0766 -3.1186 6.4214 39 1 3.7976 -0.6875 6.6371 40 1 3.4691 1.3917 4.5032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985985267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:45 Heat of formation + Delta-G solvation = -23.378676 kcal Electronic energy + Delta-G solvation = -23253.794268 eV Core-core repulsion = 19841.510099 eV Total energy + Delta-G solvation = -3412.284169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71671 -39.21047 -37.32924 -36.86248 -34.31718 -32.33251 -31.27905 -30.75807 -30.09957 -29.32245 -25.48637 -24.37069 -23.17185 -22.43252 -22.11669 -20.38231 -19.49397 -18.33088 -17.63143 -17.20160 -16.46157 -16.02818 -15.92971 -15.02130 -14.72893 -14.43429 -14.15184 -14.04995 -13.72893 -13.45009 -13.01285 -12.75445 -12.59409 -12.47444 -12.30854 -12.12023 -11.88601 -11.72781 -11.31843 -11.25528 -10.95489 -10.83762 -10.64899 -10.38369 -10.09893 -9.70266 -9.61200 -9.27150 -8.99921 -8.95830 -8.49025 -7.37140 -5.84636 -3.22049 0.65363 0.96407 2.76108 3.00303 3.33812 3.37580 3.42237 3.44654 3.94979 4.38649 4.52856 4.54929 4.67479 4.88244 4.95556 5.07022 5.11214 5.16379 5.34239 5.41992 5.45568 5.55326 5.57410 5.64260 5.79750 5.84423 5.93598 5.97720 6.01720 6.09872 6.17505 6.32132 6.42739 6.48567 6.51110 6.61412 6.77418 7.45211 7.62998 7.89291 8.26161 8.33824 9.10454 9.83095 10.01373 11.33092 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.003953 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.438404 B = 7082.403048 C = 7397.768053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 H 0.074 0.926 4 C 0.181 3.819 5 H 0.074 0.926 6 N -0.739 5.739 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.010 3.990 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.155 4.155 16 C 0.093 3.907 17 N -0.605 5.605 18 C 0.569 3.431 19 O -0.521 6.521 20 C -0.152 4.152 21 C -0.077 4.077 22 C -0.137 4.137 23 C -0.085 4.085 24 C -0.156 4.156 25 C 0.159 3.841 26 O -0.481 6.481 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.363 0.637 31 H 0.261 0.739 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -7.086 22.107 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.092 0.908 6 N -0.381 5.381 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.196 4.196 16 C -0.030 4.030 17 N -0.340 5.340 18 C 0.357 3.643 19 O -0.397 6.397 20 C -0.155 4.155 21 C -0.096 4.096 22 C -0.155 4.155 23 C -0.103 4.103 24 C -0.174 4.174 25 C 0.112 3.888 26 O -0.291 6.291 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.196 0.804 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.444 -6.793 22.299 23.355 hybrid contribution 0.855 1.344 -0.022 1.593 sum 2.299 -5.450 22.277 23.048 Atomic orbital electron populations 1.22073 0.94541 1.01992 1.02860 1.21911 0.94763 0.96580 0.84455 0.90804 1.21224 0.93887 0.91348 0.86551 0.90848 1.42696 1.82424 1.08348 1.04634 1.19016 1.39555 0.97389 0.81793 0.88979 1.24655 1.01272 0.97609 0.95140 1.69690 1.53630 1.34726 0.99688 0.86597 0.78354 0.86414 0.77464 1.21012 1.21594 1.20210 1.23546 1.00954 1.02045 0.93028 1.22630 0.94861 0.88265 0.97202 1.48480 1.52250 1.28519 1.04708 1.17732 0.81517 0.83940 0.81113 1.90808 1.37127 1.28792 1.83012 1.20391 1.04894 0.94884 0.95359 1.21567 0.96234 0.92460 0.99309 1.21132 1.00206 1.00405 0.93788 1.21201 0.97613 0.93837 0.97672 1.21416 1.01543 0.94883 0.99576 1.18465 0.94724 0.84289 0.91290 1.84815 1.45996 1.13586 1.84737 0.91684 0.91143 0.92789 0.80383 0.92916 0.90666 0.89977 0.90789 0.91380 0.84393 0.85124 0.85259 0.84862 0.75108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.11 37.16 0.34 -2.20 16 2 C 0.13 2.13 3.23 -66.95 -0.22 1.91 16 3 H 0.07 1.36 7.69 -51.92 -0.40 0.96 16 4 C 0.18 3.27 3.12 -66.09 -0.21 3.06 16 5 H 0.07 1.35 7.83 -51.93 -0.41 0.94 16 6 N -0.74 -16.64 5.06 -51.65 -0.26 -16.91 16 7 C -0.25 -6.66 10.46 -15.06 -0.16 -6.82 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 10 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 11 Si 0.88 21.65 27.74 -169.99 -4.71 16.93 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 15 C -0.15 -2.35 6.77 -24.58 -0.17 -2.52 16 16 C 0.09 1.14 5.12 -2.53 -0.01 1.13 16 17 N -0.61 -9.01 3.06 -164.23 -0.50 -9.51 16 18 C 0.57 8.99 7.21 -12.47 -0.09 8.90 16 19 O -0.52 -10.04 14.89 -12.15 -0.18 -10.22 16 20 C -0.15 -1.95 5.53 -104.84 -0.58 -2.53 16 21 C -0.08 -0.77 7.91 -39.20 -0.31 -1.08 16 22 C -0.14 -1.09 10.02 -39.63 -0.40 -1.49 16 23 C -0.08 -0.65 10.03 -39.54 -0.40 -1.04 16 24 C -0.16 -1.42 9.98 -39.47 -0.39 -1.82 16 25 C 0.16 1.90 6.68 -38.70 -0.26 1.64 16 26 O -0.48 -6.01 12.16 -36.08 -0.44 -6.45 16 27 H 0.06 1.11 6.76 -51.93 -0.35 0.76 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.36 8.21 5.38 -40.82 -0.22 7.99 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.78 6.59 -51.93 -0.34 0.44 16 35 H 0.07 0.71 7.23 -51.93 -0.38 0.33 16 36 H 0.14 1.22 5.42 -52.49 -0.28 0.94 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.39 3.22 9.06 45.56 0.41 3.64 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -33.91 327.35 -7.85 -41.76 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.52 Total: 9.79 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.94 Total: -2.68 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.01 Total: -54.07 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.62 Total: -16.67 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.91 -7.85 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985985267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.377 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds