Wall clock time and date at job start Tue Mar 31 2020 06:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.99635 * 2 1 4 4 C 1.54327 * 109.99507 * 238.96261 * 2 1 3 5 5 H 1.09006 * 110.66479 * 337.04413 * 4 2 1 6 6 N 1.46499 * 110.85383 * 100.19556 * 4 2 1 7 7 C 1.36935 * 119.99928 * 200.14885 * 6 4 2 8 8 H 1.07995 * 120.00491 * 0.02562 * 7 6 4 9 9 C 1.38811 * 119.99839 * 179.97438 * 7 6 4 10 10 N 1.31623 * 120.00485 * 180.02562 * 9 7 6 11 11 Si 1.86810 * 119.99992 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46796 * 90.00050 * 11 9 7 13 13 H 1.48503 * 109.46890 * 210.00061 * 11 9 7 14 14 H 1.48499 * 109.47057 * 330.00043 * 11 9 7 15 15 C 1.55160 * 103.02267 * 218.66857 * 4 2 1 16 16 C 1.54912 * 101.58128 * 35.30018 * 15 4 2 17 17 N 1.47021 * 109.88405 * 121.08940 * 2 1 3 18 18 C 1.34779 * 125.65039 * 298.39986 * 17 2 1 19 19 O 1.21584 * 119.99882 * 3.71873 * 18 17 2 20 20 C 1.47540 * 119.99834 * 183.71784 * 18 17 2 21 21 C 1.39710 * 120.19050 * 324.11524 * 20 18 17 22 22 C 1.37787 * 119.90522 * 180.29872 * 21 20 18 23 23 C 1.38547 * 120.29975 * 359.72600 * 22 21 20 24 24 C 1.38052 * 120.39211 * 0.02562 * 23 22 21 25 25 C 1.38714 * 120.08357 * 0.02562 * 24 23 22 26 26 O 1.35649 * 120.14986 * 179.97438 * 25 24 23 27 27 H 1.09006 * 109.47045 * 300.36039 * 1 2 3 28 28 H 1.08998 * 109.47325 * 60.35956 * 1 2 3 29 29 H 1.09004 * 109.47130 * 180.36440 * 1 2 3 30 30 H 0.97005 * 119.99518 * 20.14635 * 6 4 2 31 31 H 0.96992 * 120.00483 * 179.97438 * 10 9 7 32 32 H 1.09008 * 110.99644 * 277.23021 * 15 4 2 33 33 H 1.08997 * 111.00578 * 153.37890 * 15 4 2 34 34 H 1.08997 * 110.36243 * 204.15510 * 16 15 4 35 35 H 1.08998 * 110.36456 * 81.83311 * 16 15 4 36 36 H 1.07998 * 120.04827 * 0.02562 * 21 20 18 37 37 H 1.08002 * 119.85124 * 179.69989 * 22 21 20 38 38 H 1.08000 * 119.80516 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.95841 * 179.97438 * 24 23 22 40 40 H 0.96700 * 114.00142 * 89.99896 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0577 -0.7477 -1.2426 5 1 1.3067 -1.4405 -1.6224 6 7 2.4637 0.1968 -2.2863 7 6 2.5655 -0.2214 -3.5862 8 1 2.3461 -1.2473 -3.8422 9 6 2.9497 0.6737 -4.5751 10 7 3.0471 0.2720 -5.8248 11 14 3.3286 2.4486 -4.1325 12 1 4.7704 2.5792 -3.8015 13 1 3.0039 3.3264 -5.2854 14 1 2.5128 2.8510 -2.9587 15 6 3.2864 -1.5184 -0.6913 16 6 2.8099 -1.8824 0.7370 17 7 2.0300 -0.7139 1.1840 18 6 1.8073 -0.3618 2.4658 19 8 1.0861 0.5834 2.7200 20 6 2.4388 -1.1235 3.5603 21 6 2.6082 -2.5057 3.4478 22 6 3.1931 -3.2121 4.4761 23 6 3.6196 -2.5570 5.6201 24 6 3.4629 -1.1909 5.7421 25 6 2.8753 -0.4641 4.7172 26 8 2.7202 0.8783 4.8359 27 1 -0.3633 0.5194 0.8868 28 1 -0.3634 0.5082 -0.8932 29 1 -0.3633 -1.0277 0.0065 30 1 2.6604 1.1184 -2.0563 31 1 3.3152 0.8976 -6.5159 32 1 4.1670 -0.8767 -0.6578 33 1 3.4807 -2.4155 -1.2790 34 1 3.6655 -2.0410 1.3934 35 1 2.1801 -2.7717 0.7117 36 1 2.2773 -3.0204 2.5579 37 1 3.3192 -4.2812 4.3903 38 1 4.0766 -3.1186 6.4214 39 1 3.7976 -0.6875 6.6371 40 1 3.4691 1.3917 4.5032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985985267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:44 Heat of formation + Delta-G solvation = -47.219249 kcal Electronic energy + Delta-G solvation = -23254.828073 eV Core-core repulsion = 19841.510099 eV Total energy + Delta-G solvation = -3413.317973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75223 -40.22203 -38.61156 -37.68400 -36.04016 -33.80024 -32.78262 -31.92832 -30.97425 -30.57198 -27.00512 -25.37207 -24.67476 -23.42919 -23.18389 -21.79334 -20.69771 -19.56250 -19.14255 -18.27838 -17.68764 -16.92862 -16.81869 -16.41055 -15.95751 -15.92014 -15.34644 -15.12836 -14.81447 -14.77287 -14.63941 -14.22355 -13.77782 -13.51898 -13.41389 -13.22023 -13.15875 -13.03447 -12.72553 -12.59528 -12.47463 -12.26069 -12.03858 -11.82663 -11.66048 -11.57129 -10.99578 -10.81416 -10.01546 -9.80894 -9.58703 -9.33371 -8.02929 -5.37017 -0.12668 0.28595 1.37998 1.38833 1.45767 1.70319 1.86912 2.46854 2.68145 3.21422 3.26134 3.38261 3.50645 3.66603 3.89888 3.92327 4.09220 4.14332 4.27528 4.31568 4.37627 4.43792 4.46217 4.62394 4.65892 4.73713 4.85537 4.93539 4.98326 5.16814 5.19933 5.25096 5.31209 5.35830 5.41082 5.46122 5.76828 5.82402 6.20683 6.47080 6.73569 7.04266 7.08715 7.79665 7.97464 9.17951 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.003953 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.438404 B = 7082.403048 C = 7397.768053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.132 3.868 3 H 0.054 0.946 4 C 0.174 3.826 5 H 0.072 0.928 6 N -0.744 5.744 7 C -0.224 4.224 8 H 0.068 0.932 9 C -0.056 4.056 10 N -0.979 5.979 11 Si 0.944 3.056 12 H -0.279 1.279 13 H -0.297 1.297 14 H -0.260 1.260 15 C -0.148 4.148 16 C 0.102 3.898 17 N -0.604 5.604 18 C 0.567 3.433 19 O -0.568 6.568 20 C -0.180 4.180 21 C -0.079 4.079 22 C -0.131 4.131 23 C -0.073 4.073 24 C -0.158 4.158 25 C 0.136 3.864 26 O -0.504 6.504 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.363 0.637 31 H 0.258 0.742 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.150 0.850 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 -8.925 24.956 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 H 0.072 0.928 4 C 0.065 3.935 5 H 0.090 0.910 6 N -0.387 5.387 7 C -0.355 4.355 8 H 0.086 0.914 9 C -0.248 4.248 10 N -0.630 5.630 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.224 1.224 14 H -0.185 1.185 15 C -0.188 4.188 16 C -0.020 4.020 17 N -0.337 5.337 18 C 0.358 3.642 19 O -0.447 6.447 20 C -0.184 4.184 21 C -0.098 4.098 22 C -0.148 4.148 23 C -0.091 4.091 24 C -0.176 4.176 25 C 0.090 3.910 26 O -0.316 6.316 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.196 0.804 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.168 0.832 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.478 -8.670 25.208 26.772 hybrid contribution 0.533 1.785 -0.798 2.027 sum 3.011 -6.884 24.409 25.540 Atomic orbital electron populations 1.21983 0.94204 1.02588 1.01882 1.21651 0.94970 0.95656 0.84978 0.92829 1.21402 0.95281 0.90895 0.85939 0.90967 1.42697 1.82738 1.09175 1.04090 1.18989 1.36881 0.96155 0.83484 0.91379 1.25352 1.02577 1.01770 0.95085 1.69846 1.56179 1.36084 1.00873 0.85572 0.78453 0.81417 0.77303 1.20479 1.22362 1.18487 1.23388 0.98884 1.01558 0.94978 1.22773 0.95942 0.87987 0.95313 1.48491 1.52217 1.28976 1.04056 1.18285 0.80803 0.83489 0.81668 1.90773 1.39267 1.31008 1.83693 1.20298 1.07180 0.96046 0.94872 1.21740 0.96256 0.91202 1.00577 1.21541 0.98500 1.01934 0.92862 1.21673 0.95889 0.93211 0.98332 1.21657 1.00990 0.95723 0.99246 1.18806 0.95934 0.84131 0.92092 1.84769 1.47305 1.14590 1.84977 0.92866 0.91833 0.91381 0.80402 0.93333 0.91775 0.89203 0.88299 0.88540 0.83307 0.81803 0.81747 0.83193 0.73785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.11 71.98 0.66 -4.15 16 2 C 0.13 4.40 3.23 45.34 0.15 4.55 16 3 H 0.05 2.01 7.69 -2.38 -0.02 1.99 16 4 C 0.17 6.15 3.12 46.18 0.14 6.30 16 5 H 0.07 2.59 7.83 -2.38 -0.02 2.57 16 6 N -0.74 -33.38 5.06 -317.32 -1.60 -34.99 16 7 C -0.22 -12.17 10.46 84.03 0.88 -11.29 16 8 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 9 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 10 N -0.98 -61.31 13.97 21.65 0.30 -61.01 16 11 Si 0.94 45.24 27.74 68.60 1.90 47.14 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 14 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 15 C -0.15 -4.23 6.77 31.99 0.22 -4.01 16 16 C 0.10 2.20 5.12 86.86 0.45 2.65 16 17 N -0.60 -17.28 3.06 -791.76 -2.43 -19.70 16 18 C 0.57 17.68 7.21 86.70 0.62 18.30 16 19 O -0.57 -22.39 14.89 12.69 0.19 -22.20 16 20 C -0.18 -4.35 5.53 -20.01 -0.11 -4.46 16 21 C -0.08 -1.32 7.91 22.52 0.18 -1.14 16 22 C -0.13 -1.45 10.02 22.24 0.22 -1.23 16 23 C -0.07 -0.78 10.03 22.30 0.22 -0.55 16 24 C -0.16 -2.43 9.98 22.34 0.22 -2.21 16 25 C 0.14 3.09 6.68 22.84 0.15 3.25 16 26 O -0.50 -12.67 12.16 -72.96 -0.89 -13.56 16 27 H 0.05 1.85 6.76 -2.38 -0.02 1.84 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.36 16.25 5.38 -92.70 -0.50 15.75 16 31 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.10 1.73 6.59 -2.39 -0.02 1.72 16 35 H 0.10 1.62 7.23 -2.39 -0.02 1.60 16 36 H 0.15 2.03 5.42 -2.91 -0.02 2.02 16 37 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.40 6.87 9.06 -74.06 -0.67 6.19 16 Total: -1.00 -76.08 327.35 1.79 -74.29 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.15 Total: 26.79 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 4.47 Total: 3.24 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -3.73 Total: -115.70 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.70 Total: -35.76 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.14 kcal Total: -76.08 1.79 -74.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985985267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.068 kcal (2) G-P(sol) polarization free energy of solvation -76.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds