Wall clock time and date at job start Tue Mar 31 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.99898 * 2 1 4 4 C 1.54335 * 109.99154 * 238.96198 * 2 1 3 5 5 H 1.08995 * 110.84962 * 100.19655 * 4 2 1 6 6 N 1.46504 * 110.66608 * 337.04946 * 4 2 1 7 7 C 1.36941 * 119.99721 * 96.32081 * 6 4 2 8 8 H 1.07994 * 120.00067 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99828 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99853 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47088 * 60.00054 * 11 9 7 13 13 H 1.48500 * 109.47183 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47325 * 300.00092 * 11 9 7 15 15 C 1.55150 * 103.02389 * 218.66743 * 4 2 1 16 16 C 1.54912 * 101.58390 * 35.30649 * 15 4 2 17 17 N 1.47022 * 109.88222 * 121.09813 * 2 1 3 18 18 C 1.34780 * 125.64845 * 298.39306 * 17 2 1 19 19 O 1.21590 * 119.99730 * 3.72078 * 18 17 2 20 20 C 1.47534 * 119.99930 * 183.71893 * 18 17 2 21 21 C 1.39707 * 120.19262 * 324.10626 * 20 18 17 22 22 C 1.37785 * 119.90779 * 180.25955 * 21 20 18 23 23 C 1.38545 * 120.30081 * 359.74297 * 22 21 20 24 24 C 1.38051 * 120.39091 * 359.97438 * 23 22 21 25 25 C 1.38706 * 120.08354 * 0.02562 * 24 23 22 26 26 O 1.35661 * 120.15175 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46874 * 295.53078 * 1 2 3 28 28 H 1.08997 * 109.46874 * 55.53145 * 1 2 3 29 29 H 1.08999 * 109.47358 * 175.53216 * 1 2 3 30 30 H 0.96996 * 120.00216 * 276.31278 * 6 4 2 31 31 H 0.97010 * 119.99937 * 180.02562 * 10 9 7 32 32 H 1.08999 * 111.00309 * 277.23589 * 15 4 2 33 33 H 1.09002 * 111.00607 * 153.38133 * 15 4 2 34 34 H 1.08992 * 110.36938 * 204.15371 * 16 15 4 35 35 H 1.08995 * 110.36644 * 81.82884 * 16 15 4 36 36 H 1.08002 * 120.04957 * 0.02562 * 21 20 18 37 37 H 1.08000 * 119.85324 * 179.72716 * 22 21 20 38 38 H 1.08008 * 119.80686 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.96047 * 180.02562 * 24 23 22 40 40 H 0.96701 * 114.00026 * 89.99702 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3597 -0.0450 -2.0191 6 7 1.0482 -1.6788 -1.7532 7 6 0.2262 -1.3012 -2.7813 8 1 0.3217 -0.3170 -3.2154 9 6 -0.7299 -2.1835 -3.2653 10 7 -0.8466 -3.3828 -2.7358 11 14 -1.8517 -1.6683 -4.6672 12 1 -1.0325 -1.3370 -5.8606 13 1 -2.7775 -2.7821 -4.9953 14 1 -2.6376 -0.4759 -4.2597 15 6 3.2863 -1.5184 -0.6915 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.0862 0.5832 2.7201 20 6 2.4388 -1.1238 3.5602 21 6 2.6079 -2.5061 3.4477 22 6 3.1934 -3.2124 4.4756 23 6 3.6206 -2.5575 5.6193 24 6 3.4649 -1.1912 5.7411 25 6 2.8776 -0.4643 4.7161 26 8 2.7234 0.8783 4.8345 27 1 -0.3633 0.4429 0.9273 28 1 -0.3633 0.5816 -0.8472 29 1 -0.3634 -1.0245 -0.0801 30 1 0.9622 -2.5627 -1.3631 31 1 -1.5145 -3.9996 -3.0743 32 1 4.1669 -0.8769 -0.6579 33 1 3.4806 -2.4156 -1.2792 34 1 3.6655 -2.0413 1.3931 35 1 2.1802 -2.7718 0.7114 36 1 2.2768 -3.0208 2.5578 37 1 3.3198 -4.2816 4.3896 38 1 4.0790 -3.1190 6.4201 39 1 3.8008 -0.6876 6.6356 40 1 3.4726 1.3912 4.5016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985985270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:47 Heat of formation + Delta-G solvation = -23.026285 kcal Electronic energy + Delta-G solvation = -23553.079640 eV Core-core repulsion = 20140.810752 eV Total energy + Delta-G solvation = -3412.268888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53031 -39.05311 -37.16501 -36.74277 -34.03171 -32.08373 -31.02876 -30.47103 -29.92567 -28.59381 -25.35438 -24.11345 -23.46579 -22.58154 -21.96648 -20.16342 -18.83821 -18.17871 -17.52717 -16.91207 -16.16709 -15.88823 -15.68684 -14.90143 -14.58249 -14.28964 -14.03625 -13.70202 -13.51456 -13.48554 -12.87487 -12.81287 -12.48539 -12.36942 -12.19517 -11.72707 -11.50351 -11.33990 -10.90238 -10.87039 -10.74394 -10.61573 -10.45170 -10.13245 -10.06728 -9.70026 -9.40281 -9.10962 -8.96293 -8.82511 -8.19705 -7.05385 -5.83322 -3.12738 0.80370 1.09859 2.96780 3.29519 3.41594 3.46901 3.47104 3.60568 4.06508 4.53945 4.58821 4.69945 4.81339 4.97049 5.11858 5.25283 5.28582 5.35706 5.54686 5.57586 5.66010 5.72723 5.76533 5.87181 6.08251 6.08441 6.14959 6.23073 6.24959 6.28055 6.45346 6.55314 6.59055 6.66863 6.88137 7.06665 7.40521 7.56439 7.65045 7.91186 8.34049 8.51834 9.46335 9.99491 10.34830 11.38708 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.004079 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.384484 B = 6862.617867 C = 7203.058512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.110 3.890 3 H 0.059 0.941 4 C 0.170 3.830 5 H 0.075 0.925 6 N -0.708 5.708 7 C -0.241 4.241 8 H 0.071 0.929 9 C -0.008 4.008 10 N -0.931 5.931 11 Si 0.906 3.094 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.285 1.285 15 C -0.146 4.146 16 C 0.099 3.901 17 N -0.600 5.600 18 C 0.565 3.435 19 O -0.524 6.524 20 C -0.149 4.149 21 C -0.077 4.077 22 C -0.137 4.137 23 C -0.087 4.087 24 C -0.157 4.157 25 C 0.155 3.845 26 O -0.480 6.480 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.385 0.615 31 H 0.256 0.744 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.514 1.182 13.691 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.005 3.995 3 H 0.077 0.923 4 C 0.057 3.943 5 H 0.093 0.907 6 N -0.347 5.347 7 C -0.372 4.372 8 H 0.089 0.911 9 C -0.204 4.204 10 N -0.579 5.579 11 Si 0.736 3.264 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.186 4.186 16 C -0.024 4.024 17 N -0.333 5.333 18 C 0.353 3.647 19 O -0.401 6.401 20 C -0.153 4.153 21 C -0.095 4.095 22 C -0.155 4.155 23 C -0.106 4.106 24 C -0.175 4.175 25 C 0.109 3.891 26 O -0.290 6.290 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.219 0.781 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.443 1.636 13.959 18.771 hybrid contribution -0.304 -0.016 -0.764 0.822 sum 12.139 1.620 13.195 18.003 Atomic orbital electron populations 1.21823 0.93704 1.03854 1.00227 1.22730 0.96295 0.95273 0.85243 0.92313 1.21255 0.88467 0.92260 0.92280 0.90699 1.42323 1.38011 1.14472 1.39861 1.19157 1.10671 0.98699 1.08682 0.91095 1.24709 0.99675 0.96150 0.99881 1.69641 1.37399 1.06611 1.44219 0.86297 0.80572 0.77308 0.82180 1.21247 1.21741 1.21195 1.23177 0.98606 1.01839 0.94929 1.22507 0.94715 0.89101 0.96108 1.48535 1.51782 1.28134 1.04883 1.17714 0.81616 0.84052 0.81274 1.90798 1.37123 1.29102 1.83029 1.20477 1.04387 0.94889 0.95518 1.21621 0.95923 0.92548 0.99443 1.21137 1.00181 1.00388 0.93778 1.21176 0.97915 0.93830 0.97647 1.21384 1.01782 0.94869 0.99500 1.18463 0.95016 0.84197 0.91397 1.84834 1.45848 1.13644 1.84695 0.93836 0.92144 0.90758 0.78103 0.93397 0.91071 0.89447 0.91201 0.91099 0.84276 0.85168 0.85371 0.84999 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.20 37.16 0.30 -2.64 16 2 C 0.11 2.04 3.46 -66.95 -0.23 1.81 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.17 3.12 3.53 -66.09 -0.23 2.88 16 5 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 6 N -0.71 -16.15 3.64 -51.65 -0.19 -16.34 16 7 C -0.24 -6.24 8.81 -15.06 -0.13 -6.37 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 9 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 10 N -0.93 -26.87 13.06 55.49 0.72 -26.15 16 11 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 C -0.15 -2.11 6.70 -24.58 -0.16 -2.27 16 16 C 0.10 1.38 5.06 -2.52 -0.01 1.37 16 17 N -0.60 -10.10 3.06 -164.22 -0.50 -10.60 16 18 C 0.57 10.10 7.20 -12.47 -0.09 10.01 16 19 O -0.52 -11.24 14.83 -12.12 -0.18 -11.42 16 20 C -0.15 -2.18 5.53 -104.85 -0.58 -2.76 16 21 C -0.08 -0.94 7.91 -39.20 -0.31 -1.25 16 22 C -0.14 -1.33 10.02 -39.63 -0.40 -1.72 16 23 C -0.09 -0.78 10.03 -39.54 -0.40 -1.18 16 24 C -0.16 -1.61 9.98 -39.48 -0.39 -2.00 16 25 C 0.16 2.05 6.68 -38.70 -0.26 1.79 16 26 O -0.48 -6.45 12.17 -36.09 -0.44 -6.89 16 27 H 0.04 0.95 6.63 -51.93 -0.34 0.61 16 28 H 0.06 1.31 7.83 -51.93 -0.41 0.90 16 29 H 0.07 1.78 7.06 -51.93 -0.37 1.41 16 30 H 0.38 9.41 7.85 -40.82 -0.32 9.09 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.07 0.81 6.59 -51.93 -0.34 0.47 16 35 H 0.07 1.04 7.23 -51.93 -0.38 0.67 16 36 H 0.14 1.66 5.42 -52.49 -0.28 1.37 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.39 3.39 9.06 45.56 0.41 3.81 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -32.62 326.71 -8.21 -40.82 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -4.53 Total: 11.50 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.99 Total: -2.62 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.03 Total: -53.09 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.62 Total: -18.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.62 -8.21 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985985270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.797 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds