Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.99898 * 2 1 4 4 C 1.54335 * 109.99154 * 238.96198 * 2 1 3 5 5 H 1.08995 * 110.84962 * 100.19655 * 4 2 1 6 6 N 1.46504 * 110.66608 * 337.04946 * 4 2 1 7 7 C 1.36941 * 119.99721 * 96.32081 * 6 4 2 8 8 H 1.07994 * 120.00067 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99828 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99853 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47088 * 60.00054 * 11 9 7 13 13 H 1.48500 * 109.47183 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47325 * 300.00092 * 11 9 7 15 15 C 1.55150 * 103.02389 * 218.66743 * 4 2 1 16 16 C 1.54912 * 101.58390 * 35.30649 * 15 4 2 17 17 N 1.47022 * 109.88222 * 121.09813 * 2 1 3 18 18 C 1.34780 * 125.64845 * 298.39306 * 17 2 1 19 19 O 1.21590 * 119.99730 * 3.72078 * 18 17 2 20 20 C 1.47534 * 119.99930 * 183.71893 * 18 17 2 21 21 C 1.39707 * 120.19262 * 324.10626 * 20 18 17 22 22 C 1.37785 * 119.90779 * 180.25955 * 21 20 18 23 23 C 1.38545 * 120.30081 * 359.74297 * 22 21 20 24 24 C 1.38051 * 120.39091 * 359.97438 * 23 22 21 25 25 C 1.38706 * 120.08354 * 0.02562 * 24 23 22 26 26 O 1.35661 * 120.15175 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46874 * 295.53078 * 1 2 3 28 28 H 1.08997 * 109.46874 * 55.53145 * 1 2 3 29 29 H 1.08999 * 109.47358 * 175.53216 * 1 2 3 30 30 H 0.96996 * 120.00216 * 276.31278 * 6 4 2 31 31 H 0.97010 * 119.99937 * 180.02562 * 10 9 7 32 32 H 1.08999 * 111.00309 * 277.23589 * 15 4 2 33 33 H 1.09002 * 111.00607 * 153.38133 * 15 4 2 34 34 H 1.08992 * 110.36938 * 204.15371 * 16 15 4 35 35 H 1.08995 * 110.36644 * 81.82884 * 16 15 4 36 36 H 1.08002 * 120.04957 * 0.02562 * 21 20 18 37 37 H 1.08000 * 119.85324 * 179.72716 * 22 21 20 38 38 H 1.08008 * 119.80686 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.96047 * 180.02562 * 24 23 22 40 40 H 0.96701 * 114.00026 * 89.99702 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3597 -0.0450 -2.0191 6 7 1.0482 -1.6788 -1.7532 7 6 0.2262 -1.3012 -2.7813 8 1 0.3217 -0.3170 -3.2154 9 6 -0.7299 -2.1835 -3.2653 10 7 -0.8466 -3.3828 -2.7358 11 14 -1.8517 -1.6683 -4.6672 12 1 -1.0325 -1.3370 -5.8606 13 1 -2.7775 -2.7821 -4.9953 14 1 -2.6376 -0.4759 -4.2597 15 6 3.2863 -1.5184 -0.6915 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.0862 0.5832 2.7201 20 6 2.4388 -1.1238 3.5602 21 6 2.6079 -2.5061 3.4477 22 6 3.1934 -3.2124 4.4756 23 6 3.6206 -2.5575 5.6193 24 6 3.4649 -1.1912 5.7411 25 6 2.8776 -0.4643 4.7161 26 8 2.7234 0.8783 4.8345 27 1 -0.3633 0.4429 0.9273 28 1 -0.3633 0.5816 -0.8472 29 1 -0.3634 -1.0245 -0.0801 30 1 0.9622 -2.5627 -1.3631 31 1 -1.5145 -3.9996 -3.0743 32 1 4.1669 -0.8769 -0.6579 33 1 3.4806 -2.4156 -1.2792 34 1 3.6655 -2.0413 1.3931 35 1 2.1802 -2.7718 0.7114 36 1 2.2768 -3.0208 2.5578 37 1 3.3198 -4.2816 4.3896 38 1 4.0790 -3.1190 6.4201 39 1 3.8008 -0.6876 6.6356 40 1 3.4726 1.3912 4.5016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985985270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = -45.100691 kcal Electronic energy + Delta-G solvation = -23554.036858 eV Core-core repulsion = 20140.810752 eV Total energy + Delta-G solvation = -3413.226106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69953 -40.20046 -38.57514 -37.67142 -35.76591 -33.58185 -32.44507 -31.83634 -30.82886 -30.16402 -26.92312 -25.43993 -25.13831 -23.50364 -23.14062 -21.45431 -20.20179 -19.40801 -19.10443 -18.17754 -17.52215 -16.86344 -16.78428 -16.42283 -15.88902 -15.49371 -15.35992 -15.26763 -14.97516 -14.78144 -14.47674 -14.17611 -13.77029 -13.31091 -13.20796 -13.07703 -13.03254 -12.77021 -12.58881 -12.44417 -12.32038 -12.22952 -11.86477 -11.71445 -11.57800 -11.50875 -10.95594 -10.74672 -10.00258 -9.74986 -9.53143 -8.99255 -7.91491 -5.18362 -0.11324 0.28324 1.48910 1.50788 1.55681 1.78076 2.00773 2.57891 2.68756 3.21815 3.37423 3.52024 3.68171 3.86694 3.91901 4.07325 4.14553 4.24263 4.34551 4.41585 4.45834 4.51706 4.58257 4.70630 4.76581 4.82124 4.93702 4.99524 5.10340 5.22862 5.28177 5.29210 5.32789 5.45685 5.49542 5.54988 5.59338 5.82712 6.29869 6.58058 6.77467 7.16349 7.38254 8.10344 8.34609 9.31239 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.004079 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.384484 B = 6862.617867 C = 7203.058512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.114 3.886 3 H 0.065 0.935 4 C 0.163 3.837 5 H 0.080 0.920 6 N -0.714 5.714 7 C -0.230 4.230 8 H 0.075 0.925 9 C -0.067 4.067 10 N -0.966 5.966 11 Si 0.961 3.039 12 H -0.276 1.276 13 H -0.300 1.300 14 H -0.286 1.286 15 C -0.131 4.131 16 C 0.101 3.899 17 N -0.600 5.600 18 C 0.561 3.439 19 O -0.573 6.573 20 C -0.179 4.179 21 C -0.084 4.084 22 C -0.131 4.131 23 C -0.072 4.072 24 C -0.154 4.154 25 C 0.139 3.861 26 O -0.502 6.502 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.375 0.625 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.155 0.845 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.094 0.475 15.067 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.008 3.992 3 H 0.083 0.917 4 C 0.052 3.948 5 H 0.098 0.902 6 N -0.352 5.352 7 C -0.361 4.361 8 H 0.093 0.907 9 C -0.260 4.260 10 N -0.616 5.616 11 Si 0.791 3.209 12 H -0.202 1.202 13 H -0.226 1.226 14 H -0.213 1.213 15 C -0.170 4.170 16 C -0.021 4.021 17 N -0.332 5.332 18 C 0.351 3.649 19 O -0.454 6.454 20 C -0.183 4.183 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.090 4.090 24 C -0.173 4.173 25 C 0.093 3.907 26 O -0.315 6.315 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.057 0.943 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.173 0.827 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 15.086 0.952 15.329 21.528 hybrid contribution -1.036 0.245 -1.071 1.510 sum 14.050 1.198 14.257 20.053 Atomic orbital electron populations 1.21625 0.96150 1.01318 0.98999 1.22509 0.94157 0.96041 0.86498 0.91698 1.21466 0.88997 0.92186 0.92106 0.90166 1.42409 1.38747 1.14737 1.39342 1.19489 1.10033 0.98361 1.08263 0.90673 1.25357 1.01624 0.96513 1.02498 1.69778 1.38326 1.07621 1.45906 0.85402 0.78918 0.76406 0.80180 1.20224 1.22620 1.21255 1.23112 0.97525 1.01897 0.94425 1.22637 0.95260 0.87605 0.96553 1.48564 1.51695 1.28601 1.04330 1.18343 0.80886 0.83621 0.82028 1.90755 1.39334 1.31465 1.83807 1.20346 1.06891 0.95794 0.95260 1.21673 0.96543 0.91585 1.00478 1.21501 0.98654 1.01760 0.92987 1.21661 0.95939 0.93327 0.98027 1.21666 1.00860 0.95552 0.99194 1.18763 0.95826 0.84192 0.91874 1.84781 1.47370 1.14420 1.84884 0.95150 0.93159 0.93761 0.79218 0.94251 0.88023 0.89052 0.87929 0.91932 0.84620 0.82192 0.81469 0.82726 0.73669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.20 71.98 0.59 -4.85 16 2 C 0.11 4.26 3.46 45.35 0.16 4.41 16 3 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 4 C 0.16 5.86 3.53 46.18 0.16 6.02 16 5 H 0.08 2.81 8.06 -2.39 -0.02 2.79 16 6 N -0.71 -32.84 3.64 -317.32 -1.16 -34.00 16 7 C -0.23 -11.96 8.81 84.03 0.74 -11.22 16 8 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 9 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 10 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 11 Si 0.96 45.44 29.55 68.60 2.03 47.47 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 15 C -0.13 -3.47 6.70 31.98 0.21 -3.26 16 16 C 0.10 2.69 5.06 86.86 0.44 3.13 16 17 N -0.60 -20.10 3.06 -791.74 -2.43 -22.52 16 18 C 0.56 20.34 7.20 86.69 0.62 20.96 16 19 O -0.57 -25.57 14.83 12.64 0.19 -25.38 16 20 C -0.18 -5.11 5.53 -20.01 -0.11 -5.22 16 21 C -0.08 -1.89 7.91 22.52 0.18 -1.71 16 22 C -0.13 -2.03 10.02 22.24 0.22 -1.81 16 23 C -0.07 -0.95 10.03 22.30 0.22 -0.73 16 24 C -0.15 -2.67 9.98 22.34 0.22 -2.45 16 25 C 0.14 3.51 6.68 22.84 0.15 3.66 16 26 O -0.50 -13.41 12.17 -73.13 -0.89 -14.30 16 27 H 0.03 1.39 6.63 -2.39 -0.02 1.37 16 28 H 0.05 2.26 7.83 -2.39 -0.02 2.24 16 29 H 0.04 2.20 7.06 -2.39 -0.02 2.19 16 30 H 0.38 18.66 7.85 -92.71 -0.73 17.93 16 31 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 2.10 6.59 -2.39 -0.02 2.08 16 35 H 0.06 1.79 7.23 -2.39 -0.02 1.77 16 36 H 0.14 3.05 5.42 -2.91 -0.02 3.04 16 37 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 40 H 0.40 7.03 9.06 -74.06 -0.67 6.35 16 Total: -1.00 -73.53 326.71 1.99 -71.54 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.32 Total: 30.28 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 4.28 Total: 3.69 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -3.30 Total: -113.29 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.70 Total: -39.68 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.53 1.99 -71.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985985270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.443 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds