Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.86961 * 2 1 4 4 C 1.54324 * 110.00844 * 238.90319 * 2 1 3 5 5 C 1.55156 * 102.93803 * 262.69780 * 4 2 1 6 6 H 1.08998 * 111.03660 * 82.59199 * 5 4 2 7 7 N 1.46504 * 111.00026 * 206.42336 * 5 4 2 8 8 C 1.36943 * 119.99781 * 198.65412 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54911 * 101.58651 * 324.50094 * 5 4 2 17 17 N 1.47018 * 109.88432 * 121.01488 * 2 1 3 18 18 C 1.34783 * 125.64940 * 300.59637 * 17 2 1 19 19 O 1.21776 * 119.99992 * 0.02562 * 18 17 2 20 20 C 1.41550 * 119.99860 * 180.02562 * 18 17 2 21 21 C 1.35629 * 119.99808 * 179.97438 * 20 18 17 22 22 C 1.41603 * 119.99950 * 179.97438 * 21 20 18 23 23 C 1.37952 * 126.10403 * 180.02562 * 22 21 20 24 24 C 1.40315 * 106.52731 * 179.97438 * 23 22 21 25 25 C 1.35157 * 107.20710 * 0.02562 * 24 23 22 26 26 O 1.34017 * 109.03129 * 359.76597 * 25 24 23 27 27 H 1.09003 * 109.46935 * 300.43427 * 1 2 3 28 28 H 1.08996 * 109.47542 * 60.43533 * 1 2 3 29 29 H 1.08997 * 109.46777 * 180.44365 * 1 2 3 30 30 H 1.09000 * 110.71817 * 144.34132 * 4 2 1 31 31 H 1.08994 * 110.72020 * 21.06518 * 4 2 1 32 32 H 0.97000 * 120.00410 * 18.65737 * 7 5 4 33 33 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 34 34 H 1.08999 * 110.36783 * 155.84972 * 16 5 4 35 35 H 1.08996 * 110.36313 * 278.17409 * 16 5 4 36 36 H 1.08003 * 120.00050 * 0.02562 * 20 18 17 37 37 H 1.08003 * 120.00142 * 0.02562 * 21 20 18 38 38 H 1.08001 * 126.73314 * 359.94876 * 23 22 21 39 39 H 1.08004 * 126.39508 * 180.02562 * 24 23 22 40 40 H 1.07997 * 125.48331 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0581 -0.7490 -1.2417 5 6 2.3575 -2.1679 -0.6902 6 1 1.4525 -2.7747 -0.6591 7 7 3.4018 -2.8278 -1.4779 8 6 3.5499 -4.1877 -1.4159 9 1 2.8970 -4.7738 -0.7859 10 6 4.5431 -4.8123 -2.1577 11 7 5.3390 -4.0980 -2.9249 12 14 4.7500 -6.6666 -2.0671 13 1 3.7381 -7.2329 -1.1394 14 1 4.5651 -7.2519 -3.4193 15 1 6.1117 -6.9890 -1.5701 16 6 2.8599 -1.8465 0.7395 17 7 2.0301 -0.7124 1.1849 18 6 1.7730 -0.3827 2.4662 19 8 1.0708 0.5798 2.7182 20 6 2.3193 -1.1553 3.5190 21 6 2.0610 -0.8233 4.8084 22 6 2.6070 -1.5965 5.8616 23 6 2.4269 -1.3742 7.2111 24 6 3.1444 -2.3774 7.8802 25 6 3.7210 -3.1538 6.9361 26 8 3.3925 -2.6851 5.7243 27 1 -0.3633 0.5206 0.8861 28 1 -0.3634 0.5070 -0.8938 29 1 -0.3633 -1.0276 0.0080 30 1 2.9684 -0.2808 -1.6162 31 1 1.2961 -0.7905 -2.0200 32 1 3.9884 -2.3014 -2.0433 33 1 6.0328 -4.5345 -3.4436 34 1 2.7130 -2.7047 1.3951 35 1 3.9116 -1.5611 0.7167 36 1 2.9424 -2.0087 3.2955 37 1 1.4383 0.0304 5.0319 38 1 1.8477 -0.5830 7.6638 39 1 3.2214 -2.5053 8.9498 40 1 4.3427 -4.0160 7.1274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987847634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = 14.208181 kcal Electronic energy + Delta-G solvation = -22459.962181 eV Core-core repulsion = 19049.307901 eV Total energy + Delta-G solvation = -3410.654280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.71946 -40.08092 -37.59345 -34.35924 -34.07549 -33.23655 -31.77929 -31.30077 -28.94594 -28.30979 -25.47739 -24.68860 -23.70610 -22.12194 -21.61256 -20.45798 -19.78277 -18.43777 -17.75867 -17.31105 -16.81375 -16.25383 -15.58114 -15.49731 -14.82417 -14.54610 -14.19263 -13.56577 -13.32079 -13.20036 -13.07200 -13.03695 -12.97030 -12.58427 -12.42481 -12.18193 -11.88052 -11.78193 -11.20649 -10.98115 -10.75563 -10.73099 -10.64032 -10.26600 -10.11077 -9.98925 -9.81449 -9.71497 -9.04207 -8.41685 -8.04732 -7.11281 -5.87540 -3.18467 0.35516 1.96627 2.54602 2.77845 3.28757 3.37609 3.44081 3.45733 3.55647 4.46752 4.54547 4.70250 4.74123 4.93650 5.06334 5.13291 5.24937 5.33092 5.44160 5.47527 5.55077 5.59457 5.64040 5.84144 5.86030 5.86851 5.89138 6.06866 6.12750 6.15212 6.24038 6.27959 6.29661 6.46209 6.53005 6.69759 6.85395 6.87925 7.61860 7.81577 8.29695 8.37484 9.42183 9.95740 10.30743 11.34535 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.004301 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.854810 B = 6508.469027 C = 8597.725424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 H 0.070 0.930 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.064 0.936 7 N -0.713 5.713 8 C -0.248 4.248 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.071 3.929 17 N -0.602 5.602 18 C 0.560 3.440 19 O -0.559 6.559 20 C -0.189 4.189 21 C -0.006 4.006 22 C -0.002 4.002 23 C -0.171 4.171 24 C -0.221 4.221 25 C -0.021 4.021 26 O -0.163 6.163 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 5.866 16.553 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.175 4.175 5 C 0.061 3.939 6 H 0.082 0.918 7 N -0.353 5.353 8 C -0.379 4.379 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.055 4.055 17 N -0.335 5.335 18 C 0.353 3.647 19 O -0.442 6.442 20 C -0.209 4.209 21 C -0.026 4.026 22 C -0.051 4.051 23 C -0.191 4.191 24 C -0.240 4.240 25 C -0.090 4.090 26 O -0.058 6.058 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.222 0.778 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.177 0.823 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.086 6.055 16.430 18.538 hybrid contribution 0.589 -1.014 0.113 1.178 sum -5.497 5.041 16.544 18.147 Atomic orbital electron populations 1.22129 0.94975 1.02299 1.02456 1.21493 0.94430 0.95958 0.84648 0.91164 1.22982 1.01730 0.96904 0.95909 1.21280 0.92719 0.91282 0.88572 0.91766 1.42335 1.36823 1.04899 1.51220 1.19292 1.13029 0.83187 1.22415 0.90904 1.24763 0.98255 0.98044 0.99386 1.69664 1.21878 1.34376 1.31732 0.86123 0.77525 0.85237 0.77314 1.20445 1.21740 1.21760 1.23555 0.94986 0.87149 0.99774 1.48565 1.49542 1.30688 1.04671 1.16612 0.81286 0.84691 0.82127 1.90776 1.39944 1.29522 1.83917 1.22259 1.03317 1.02184 0.93164 1.20616 0.95572 0.96501 0.89872 1.19937 0.99639 0.90660 0.94908 1.22324 1.03293 1.01583 0.91869 1.21768 1.03244 0.98149 1.00808 1.24340 1.02500 1.01068 0.81131 1.84152 1.52896 1.36603 1.32121 0.91387 0.91968 0.92470 0.90506 0.90083 0.77822 0.93366 0.91208 0.91051 0.84946 0.82345 0.82729 0.83037 0.77757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.07 37.16 0.34 -1.90 16 2 C 0.14 2.10 3.49 -66.95 -0.23 1.86 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.15 6.12 -24.90 -0.15 -2.30 16 5 C 0.17 3.26 3.69 -65.78 -0.24 3.02 16 6 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 7 N -0.71 -16.78 5.28 -51.35 -0.27 -17.06 16 8 C -0.25 -6.54 9.98 -15.06 -0.15 -6.69 16 9 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.99 13.06 55.49 0.72 -26.27 16 12 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 C 0.07 1.23 6.18 -2.53 -0.02 1.22 16 17 N -0.60 -9.80 3.08 -166.41 -0.51 -10.32 16 18 C 0.56 9.22 7.39 -14.99 -0.11 9.10 16 19 O -0.56 -10.21 14.99 5.12 0.08 -10.13 16 20 C -0.19 -2.71 8.91 -39.25 -0.35 -3.06 16 21 C -0.01 -0.07 9.39 -39.23 -0.37 -0.44 16 22 C 0.00 -0.02 6.84 -38.40 -0.26 -0.29 16 23 C -0.17 -1.69 10.90 -38.91 -0.42 -2.12 16 24 C -0.22 -1.92 10.87 -39.90 -0.43 -2.36 16 25 C -0.02 -0.19 12.06 29.64 0.36 0.17 16 26 O -0.16 -2.01 10.18 4.69 0.05 -1.96 16 27 H 0.07 1.03 6.73 -51.93 -0.35 0.68 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 31 H 0.08 1.18 7.83 -51.93 -0.41 0.78 16 32 H 0.39 9.70 7.71 -40.82 -0.31 9.38 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.19 7.12 -51.93 -0.37 0.82 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.13 1.89 6.40 -52.48 -0.34 1.55 16 37 H 0.16 1.83 7.46 -52.48 -0.39 1.44 16 38 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -31.06 340.09 -7.49 -38.55 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.51 Total: 9.57 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.15 Total: -4.09 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.06 Total: -53.64 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.12 Total: -12.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.06 -7.49 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987847634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.754 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds