Wall clock time and date at job start Tue Mar 31 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.86961 * 2 1 4 4 C 1.54324 * 110.00844 * 238.90319 * 2 1 3 5 5 C 1.55156 * 102.93803 * 262.69780 * 4 2 1 6 6 H 1.08998 * 111.03660 * 82.59199 * 5 4 2 7 7 N 1.46504 * 111.00026 * 206.42336 * 5 4 2 8 8 C 1.36943 * 119.99781 * 198.65412 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54911 * 101.58651 * 324.50094 * 5 4 2 17 17 N 1.47018 * 109.88432 * 121.01488 * 2 1 3 18 18 C 1.34783 * 125.64940 * 300.59637 * 17 2 1 19 19 O 1.21776 * 119.99992 * 0.02562 * 18 17 2 20 20 C 1.41550 * 119.99860 * 180.02562 * 18 17 2 21 21 C 1.35629 * 119.99808 * 179.97438 * 20 18 17 22 22 C 1.41603 * 119.99950 * 179.97438 * 21 20 18 23 23 C 1.37952 * 126.10403 * 180.02562 * 22 21 20 24 24 C 1.40315 * 106.52731 * 179.97438 * 23 22 21 25 25 C 1.35157 * 107.20710 * 0.02562 * 24 23 22 26 26 O 1.34017 * 109.03129 * 359.76597 * 25 24 23 27 27 H 1.09003 * 109.46935 * 300.43427 * 1 2 3 28 28 H 1.08996 * 109.47542 * 60.43533 * 1 2 3 29 29 H 1.08997 * 109.46777 * 180.44365 * 1 2 3 30 30 H 1.09000 * 110.71817 * 144.34132 * 4 2 1 31 31 H 1.08994 * 110.72020 * 21.06518 * 4 2 1 32 32 H 0.97000 * 120.00410 * 18.65737 * 7 5 4 33 33 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 34 34 H 1.08999 * 110.36783 * 155.84972 * 16 5 4 35 35 H 1.08996 * 110.36313 * 278.17409 * 16 5 4 36 36 H 1.08003 * 120.00050 * 0.02562 * 20 18 17 37 37 H 1.08003 * 120.00142 * 0.02562 * 21 20 18 38 38 H 1.08001 * 126.73314 * 359.94876 * 23 22 21 39 39 H 1.08004 * 126.39508 * 180.02562 * 24 23 22 40 40 H 1.07997 * 125.48331 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0581 -0.7490 -1.2417 5 6 2.3575 -2.1679 -0.6902 6 1 1.4525 -2.7747 -0.6591 7 7 3.4018 -2.8278 -1.4779 8 6 3.5499 -4.1877 -1.4159 9 1 2.8970 -4.7738 -0.7859 10 6 4.5431 -4.8123 -2.1577 11 7 5.3390 -4.0980 -2.9249 12 14 4.7500 -6.6666 -2.0671 13 1 3.7381 -7.2329 -1.1394 14 1 4.5651 -7.2519 -3.4193 15 1 6.1117 -6.9890 -1.5701 16 6 2.8599 -1.8465 0.7395 17 7 2.0301 -0.7124 1.1849 18 6 1.7730 -0.3827 2.4662 19 8 1.0708 0.5798 2.7182 20 6 2.3193 -1.1553 3.5190 21 6 2.0610 -0.8233 4.8084 22 6 2.6070 -1.5965 5.8616 23 6 2.4269 -1.3742 7.2111 24 6 3.1444 -2.3774 7.8802 25 6 3.7210 -3.1538 6.9361 26 8 3.3925 -2.6851 5.7243 27 1 -0.3633 0.5206 0.8861 28 1 -0.3634 0.5070 -0.8938 29 1 -0.3633 -1.0276 0.0080 30 1 2.9684 -0.2808 -1.6162 31 1 1.2961 -0.7905 -2.0200 32 1 3.9884 -2.3014 -2.0433 33 1 6.0328 -4.5345 -3.4436 34 1 2.7130 -2.7047 1.3951 35 1 3.9116 -1.5611 0.7167 36 1 2.9424 -2.0087 3.2955 37 1 1.4383 0.0304 5.0319 38 1 1.8477 -0.5830 7.6638 39 1 3.2214 -2.5053 8.9498 40 1 4.3427 -4.0160 7.1274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987847634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:55 Heat of formation + Delta-G solvation = -4.566870 kcal Electronic energy + Delta-G solvation = -22460.776328 eV Core-core repulsion = 19049.307901 eV Total energy + Delta-G solvation = -3411.468427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.52076 -41.37425 -38.95818 -36.01908 -35.23150 -34.03221 -33.30315 -32.81447 -30.05967 -29.75287 -26.77452 -26.04708 -25.29761 -23.04116 -22.69325 -21.74879 -20.89014 -19.64865 -19.28939 -18.73008 -17.85217 -17.10964 -16.97085 -16.84466 -16.26151 -15.73778 -15.64354 -15.11936 -14.71785 -14.71238 -14.38706 -13.91844 -13.87568 -13.71512 -13.52094 -13.28916 -13.09446 -13.05983 -12.98346 -12.81086 -12.23581 -12.11692 -12.01030 -11.72976 -11.71487 -11.45880 -11.13334 -10.88352 -10.85913 -9.72153 -9.07530 -8.95134 -7.95294 -5.25451 -0.61652 1.14121 1.49562 1.50350 1.59816 1.69842 2.01396 2.04669 2.39439 2.56790 3.36453 3.41995 3.77250 3.82888 3.95886 3.98017 4.04073 4.11006 4.11694 4.26420 4.33890 4.46872 4.51454 4.64748 4.71981 4.75621 4.84873 4.91305 4.96873 5.03363 5.07755 5.11958 5.20028 5.25085 5.36940 5.49917 5.54221 5.55191 6.08907 6.25976 6.51270 7.10977 7.33732 8.04384 8.29234 9.27785 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.004301 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.854810 B = 6508.469027 C = 8597.725424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.124 4.124 5 C 0.168 3.832 6 H 0.063 0.937 7 N -0.723 5.723 8 C -0.244 4.244 9 H 0.078 0.922 10 C -0.068 4.068 11 N -0.966 5.966 12 Si 0.969 3.031 13 H -0.266 1.266 14 H -0.294 1.294 15 H -0.294 1.294 16 C 0.087 3.913 17 N -0.606 5.606 18 C 0.563 3.437 19 O -0.583 6.583 20 C -0.230 4.230 21 C 0.030 3.970 22 C -0.050 4.050 23 C -0.150 4.150 24 C -0.228 4.228 25 C -0.015 4.015 26 O -0.188 6.188 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.378 0.622 33 H 0.252 0.748 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.167 0.833 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.540 5.522 18.830 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.092 0.908 4 C -0.162 4.162 5 C 0.057 3.943 6 H 0.081 0.919 7 N -0.362 5.362 8 C -0.375 4.375 9 H 0.096 0.904 10 C -0.261 4.261 11 N -0.616 5.616 12 Si 0.798 3.202 13 H -0.190 1.190 14 H -0.221 1.221 15 H -0.222 1.222 16 C -0.039 4.039 17 N -0.338 5.338 18 C 0.357 3.643 19 O -0.467 6.467 20 C -0.251 4.251 21 C 0.010 3.990 22 C -0.098 4.098 23 C -0.169 4.169 24 C -0.246 4.246 25 C -0.084 4.084 26 O -0.084 6.084 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.210 0.790 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.185 0.815 38 H 0.196 0.804 39 H 0.199 0.801 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.864 5.726 18.740 20.763 hybrid contribution 0.800 -0.893 -0.316 1.240 sum -6.064 4.833 18.425 19.990 Atomic orbital electron populations 1.22059 0.93751 1.02170 1.03008 1.21582 0.95368 0.95862 0.83863 0.90801 1.22894 1.02173 0.94654 0.96512 1.21413 0.91294 0.92631 0.88916 0.91941 1.42443 1.37731 1.04229 1.51845 1.19645 1.12194 0.84555 1.21139 0.90403 1.25502 0.98652 1.01984 0.99928 1.69805 1.22804 1.35810 1.33189 0.85147 0.77312 0.80648 0.77081 1.19027 1.22141 1.22167 1.23160 0.94323 0.87657 0.98746 1.48555 1.49606 1.30437 1.05171 1.16854 0.80710 0.84408 0.82300 1.90749 1.41239 1.30615 1.84128 1.22004 1.06304 1.03365 0.93387 1.20768 0.93146 0.95550 0.89496 1.20021 1.02180 0.92026 0.95589 1.22801 1.01577 1.01490 0.91062 1.22206 1.02671 0.97455 1.02304 1.25231 1.01466 1.01368 0.80286 1.84146 1.53406 1.37042 1.33855 0.92665 0.89562 0.92852 0.90718 0.88509 0.78959 0.93949 0.91238 0.92379 0.85600 0.81529 0.80405 0.80050 0.74455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.07 71.98 0.65 -3.41 16 2 C 0.14 4.06 3.49 45.34 0.16 4.22 16 3 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 4 C -0.12 -3.82 6.12 31.78 0.19 -3.62 16 5 C 0.17 6.31 3.69 46.38 0.17 6.48 16 6 H 0.06 2.39 8.13 -2.39 -0.02 2.37 16 7 N -0.72 -34.43 5.28 -316.36 -1.67 -36.10 16 8 C -0.24 -12.88 9.98 84.03 0.84 -12.04 16 9 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 10 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 11 N -0.97 -57.13 13.06 21.65 0.28 -56.85 16 12 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 13 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 14 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 16 C 0.09 3.07 6.18 86.86 0.54 3.61 16 17 N -0.61 -19.86 3.08 -798.60 -2.46 -22.32 16 18 C 0.56 18.76 7.39 85.06 0.63 19.39 16 19 O -0.58 -21.36 14.99 -4.59 -0.07 -21.42 16 20 C -0.23 -6.74 8.91 22.48 0.20 -6.54 16 21 C 0.03 0.75 9.39 22.50 0.21 0.96 16 22 C -0.05 -1.13 6.84 23.03 0.16 -0.97 16 23 C -0.15 -2.56 10.90 22.71 0.25 -2.31 16 24 C -0.23 -3.19 10.87 22.06 0.24 -2.95 16 25 C -0.01 -0.23 12.06 67.11 0.81 0.58 16 26 O -0.19 -4.46 10.18 -6.13 -0.06 -4.52 16 27 H 0.05 1.64 6.73 -2.39 -0.02 1.62 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.35 8.00 -2.39 -0.02 2.33 16 31 H 0.10 2.68 7.83 -2.39 -0.02 2.66 16 32 H 0.38 19.30 7.71 -92.71 -0.71 18.59 16 33 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.07 2.43 7.12 -2.39 -0.02 2.41 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.13 3.77 6.40 -2.91 -0.02 3.75 16 37 H 0.17 3.73 7.46 -2.91 -0.02 3.71 16 38 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.24 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -67.18 340.09 3.90 -63.28 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.33 Total: 31.17 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.51 Total: 0.09 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -3.85 Total: -115.27 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.13 Total: -25.94 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.18 3.90 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987847634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.714 kcal (2) G-P(sol) polarization free energy of solvation -67.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds