Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.00137 * 2 1 4 4 C 1.54337 * 109.99286 * 238.96655 * 2 1 3 5 5 C 1.55155 * 103.02120 * 218.66329 * 4 2 1 6 6 H 1.09008 * 111.03365 * 153.39315 * 5 4 2 7 7 N 1.46495 * 111.00775 * 277.23262 * 5 4 2 8 8 C 1.36933 * 120.00140 * 198.65414 * 7 5 4 9 9 H 1.08002 * 120.00172 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00120 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99915 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00158 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47268 * 59.99770 * 12 10 8 14 14 H 1.48498 * 109.47249 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46765 * 299.99661 * 12 10 8 16 16 C 1.54907 * 101.58348 * 35.30828 * 5 4 2 17 17 N 1.47019 * 109.88581 * 121.10242 * 2 1 3 18 18 C 1.34781 * 125.64355 * 298.39575 * 17 2 1 19 19 O 1.21775 * 120.00426 * 359.70996 * 18 17 2 20 20 C 1.41553 * 119.99990 * 179.71432 * 18 17 2 21 21 C 1.35624 * 120.00253 * 173.24061 * 20 18 17 22 22 C 1.41609 * 120.00121 * 351.33249 * 21 20 18 23 23 C 1.37951 * 126.10583 * 139.53788 * 22 21 20 24 24 C 1.40316 * 106.52844 * 180.13363 * 23 22 21 25 25 C 1.35151 * 107.20404 * 359.64504 * 24 23 22 26 26 O 1.34025 * 109.03559 * 0.22417 * 25 24 23 27 27 H 1.09000 * 109.46597 * 300.35229 * 1 2 3 28 28 H 1.08997 * 109.46968 * 60.35826 * 1 2 3 29 29 H 1.09003 * 109.46662 * 180.35587 * 1 2 3 30 30 H 1.09003 * 110.85166 * 100.19634 * 4 2 1 31 31 H 1.08997 * 110.66607 * 337.05054 * 4 2 1 32 32 H 0.97002 * 120.00013 * 18.64643 * 7 5 4 33 33 H 0.97002 * 119.99579 * 179.97438 * 11 10 8 34 34 H 1.08992 * 110.36728 * 204.14964 * 16 5 4 35 35 H 1.09002 * 110.45851 * 81.87046 * 16 5 4 36 36 H 1.08003 * 120.00139 * 353.24636 * 20 18 17 37 37 H 1.08000 * 119.99992 * 171.32865 * 21 20 18 38 38 H 1.08002 * 126.73245 * 0.02562 * 23 22 21 39 39 H 1.07996 * 126.39699 * 179.90763 * 24 23 22 40 40 H 1.08003 * 125.48093 * 180.24764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2428 5 6 3.2864 -1.5182 -0.6916 6 1 3.4814 -2.4155 -1.2791 7 7 4.4699 -0.6561 -0.6464 8 6 5.7188 -1.2115 -0.5634 9 1 5.8313 -2.2851 -0.5309 10 6 6.8403 -0.3945 -0.5211 11 7 6.7033 0.9139 -0.5613 12 14 8.5440 -1.1521 -0.4072 13 1 8.7786 -2.0227 -1.5872 14 1 9.5644 -0.0736 -0.3777 15 1 8.6434 -1.9623 0.8333 16 6 2.8100 -1.8826 0.7367 17 7 2.0301 -0.7142 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.1449 0.6276 2.7191 20 6 2.3438 -1.1431 3.5174 21 6 2.2378 -0.7170 4.8006 22 6 1.7586 0.5867 5.0764 23 6 0.8963 0.9373 6.0946 24 6 0.6942 2.3217 5.9875 25 6 1.4293 2.7531 4.9387 26 8 2.0677 1.7085 4.3932 27 1 -0.3632 0.5193 0.8868 28 1 -0.3633 0.5082 -0.8932 29 1 -0.3633 -1.0277 0.0064 30 1 2.3598 -0.0448 -2.0192 31 1 1.3067 -1.4403 -1.6226 32 1 4.3689 0.3082 -0.6754 33 1 7.4870 1.4847 -0.5314 34 1 3.6656 -2.0413 1.3930 35 1 2.1807 -2.7722 0.7131 36 1 2.8375 -2.0783 3.2981 37 1 2.5188 -1.3719 5.6120 38 1 0.4608 0.2757 6.8288 39 1 0.0712 2.9297 6.6267 40 1 1.4925 3.7752 4.5956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987847637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = 25.594117 kcal Electronic energy + Delta-G solvation = -23483.600440 eV Core-core repulsion = 20073.439892 eV Total energy + Delta-G solvation = -3410.160549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.15920 -39.86598 -37.49083 -34.10918 -33.73524 -32.60725 -31.59836 -31.25294 -28.58170 -28.27638 -25.46018 -24.34413 -23.65265 -21.69330 -21.40456 -20.27548 -19.68013 -18.38726 -17.49704 -17.13526 -16.51578 -15.81244 -15.47918 -14.93221 -14.58491 -14.03369 -13.88799 -13.76536 -13.45780 -13.14623 -12.88648 -12.66355 -12.61737 -12.33044 -12.19601 -11.99979 -11.84624 -11.60977 -11.13143 -10.92185 -10.74131 -10.61905 -10.33004 -10.02421 -9.89468 -9.72396 -9.65542 -9.42308 -9.02041 -8.14511 -7.74132 -7.03098 -5.82187 -3.12668 0.78785 2.34285 2.86566 3.40012 3.43292 3.44553 3.46239 3.53852 3.79944 4.53134 4.84827 4.94089 5.14662 5.17639 5.20898 5.25484 5.36257 5.52175 5.53899 5.60621 5.70716 5.83483 5.84641 5.90506 5.91160 6.02850 6.13516 6.16007 6.22232 6.26701 6.42753 6.43825 6.47995 6.63505 6.71180 6.73408 6.92779 7.44758 7.62955 8.04230 8.35081 8.64354 9.46683 10.02577 10.37043 11.39784 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.004973 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.956829 B = 5629.060652 C = 6603.033137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.169 3.831 6 H 0.070 0.930 7 N -0.712 5.712 8 C -0.249 4.249 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.068 3.932 17 N -0.592 5.592 18 C 0.553 3.447 19 O -0.538 6.538 20 C -0.182 4.182 21 C -0.016 4.016 22 C 0.022 3.978 23 C -0.194 4.194 24 C -0.229 4.229 25 C -0.020 4.020 26 O -0.128 6.128 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 -3.237 8.359 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.088 0.912 7 N -0.352 5.352 8 C -0.379 4.379 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.575 5.575 12 Si 0.738 3.262 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.058 4.058 17 N -0.324 5.324 18 C 0.345 3.655 19 O -0.419 6.419 20 C -0.202 4.202 21 C -0.036 4.036 22 C -0.029 4.029 23 C -0.213 4.213 24 C -0.248 4.248 25 C -0.090 4.090 26 O -0.020 6.020 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.155 0.845 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -12.635 -2.777 8.271 15.354 hybrid contribution 0.867 -0.087 0.237 0.903 sum -11.767 -2.863 8.508 14.801 Atomic orbital electron populations 1.22114 0.95541 1.01575 1.02335 1.21420 0.93388 0.96716 0.84814 0.90960 1.23028 0.98124 0.99975 0.96496 1.21322 0.87004 0.94388 0.91640 0.91216 1.42323 1.00190 1.05251 1.87405 1.19167 0.83416 0.91732 1.43632 0.91039 1.24762 0.97929 0.95305 1.02445 1.69661 1.29094 1.02134 1.56646 0.86280 0.84229 0.77823 0.77883 1.21166 1.21693 1.21216 1.23395 0.94470 0.86874 1.01061 1.48324 1.51276 1.28276 1.04572 1.16698 0.81620 0.85032 0.82151 1.90808 1.41142 1.26925 1.82998 1.22393 1.02127 1.02487 0.93224 1.20565 0.95101 0.90993 0.96940 1.19582 1.02603 0.87410 0.93275 1.22040 1.02883 0.95762 1.00608 1.21542 1.05914 0.95400 1.01947 1.24102 0.96857 0.92324 0.95750 1.84336 1.55587 1.14816 1.47299 0.91615 0.92199 0.93018 0.89897 0.90814 0.78010 0.93329 0.90247 0.92789 0.84544 0.83010 0.83762 0.83957 0.78841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.11 37.16 0.34 -1.96 16 2 C 0.14 2.36 3.45 -66.95 -0.23 2.13 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.14 -2.15 6.05 -24.89 -0.15 -2.30 16 5 C 0.17 3.10 3.69 -65.79 -0.24 2.86 16 6 H 0.07 1.23 8.13 -51.92 -0.42 0.81 16 7 N -0.71 -17.05 5.27 -51.35 -0.27 -17.32 16 8 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 12 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.07 1.14 6.14 -2.53 -0.02 1.13 16 17 N -0.59 -10.48 3.06 -166.41 -0.51 -10.99 16 18 C 0.55 10.21 7.20 -14.99 -0.11 10.11 16 19 O -0.54 -11.05 11.49 -19.65 -0.23 -11.27 16 20 C -0.18 -2.79 9.30 -39.25 -0.37 -3.15 16 21 C -0.02 -0.22 9.95 -39.23 -0.39 -0.61 16 22 C 0.02 0.35 5.30 -38.40 -0.20 0.15 16 23 C -0.19 -2.66 10.90 -38.91 -0.42 -3.08 16 24 C -0.23 -3.04 10.87 -39.90 -0.43 -3.47 16 25 C -0.02 -0.29 12.06 29.63 0.36 0.07 16 26 O -0.13 -2.33 7.86 -20.09 -0.16 -2.48 16 27 H 0.06 1.09 6.88 -51.93 -0.36 0.73 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 32 H 0.39 10.17 7.82 -40.82 -0.32 9.85 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.08 1.44 7.22 -51.93 -0.37 1.06 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.14 1.78 6.85 -52.48 -0.36 1.42 16 37 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.19 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -32.94 334.94 -8.12 -41.07 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.59 Total: 11.34 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.11 Total: -5.18 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.06 Total: -55.34 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.38 Total: -13.76 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.94 -8.12 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987847637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.659 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds