Wall clock time and date at job start Tue Mar 31 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.00137 * 2 1 4 4 C 1.54337 * 109.99286 * 238.96655 * 2 1 3 5 5 C 1.55155 * 103.02120 * 218.66329 * 4 2 1 6 6 H 1.09008 * 111.03365 * 153.39315 * 5 4 2 7 7 N 1.46495 * 111.00775 * 277.23262 * 5 4 2 8 8 C 1.36933 * 120.00140 * 198.65414 * 7 5 4 9 9 H 1.08002 * 120.00172 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00120 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99915 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00158 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47268 * 59.99770 * 12 10 8 14 14 H 1.48498 * 109.47249 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46765 * 299.99661 * 12 10 8 16 16 C 1.54907 * 101.58348 * 35.30828 * 5 4 2 17 17 N 1.47019 * 109.88581 * 121.10242 * 2 1 3 18 18 C 1.34781 * 125.64355 * 298.39575 * 17 2 1 19 19 O 1.21775 * 120.00426 * 359.70996 * 18 17 2 20 20 C 1.41553 * 119.99990 * 179.71432 * 18 17 2 21 21 C 1.35624 * 120.00253 * 173.24061 * 20 18 17 22 22 C 1.41609 * 120.00121 * 351.33249 * 21 20 18 23 23 C 1.37951 * 126.10583 * 139.53788 * 22 21 20 24 24 C 1.40316 * 106.52844 * 180.13363 * 23 22 21 25 25 C 1.35151 * 107.20404 * 359.64504 * 24 23 22 26 26 O 1.34025 * 109.03559 * 0.22417 * 25 24 23 27 27 H 1.09000 * 109.46597 * 300.35229 * 1 2 3 28 28 H 1.08997 * 109.46968 * 60.35826 * 1 2 3 29 29 H 1.09003 * 109.46662 * 180.35587 * 1 2 3 30 30 H 1.09003 * 110.85166 * 100.19634 * 4 2 1 31 31 H 1.08997 * 110.66607 * 337.05054 * 4 2 1 32 32 H 0.97002 * 120.00013 * 18.64643 * 7 5 4 33 33 H 0.97002 * 119.99579 * 179.97438 * 11 10 8 34 34 H 1.08992 * 110.36728 * 204.14964 * 16 5 4 35 35 H 1.09002 * 110.45851 * 81.87046 * 16 5 4 36 36 H 1.08003 * 120.00139 * 353.24636 * 20 18 17 37 37 H 1.08000 * 119.99992 * 171.32865 * 21 20 18 38 38 H 1.08002 * 126.73245 * 0.02562 * 23 22 21 39 39 H 1.07996 * 126.39699 * 179.90763 * 24 23 22 40 40 H 1.08003 * 125.48093 * 180.24764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2428 5 6 3.2864 -1.5182 -0.6916 6 1 3.4814 -2.4155 -1.2791 7 7 4.4699 -0.6561 -0.6464 8 6 5.7188 -1.2115 -0.5634 9 1 5.8313 -2.2851 -0.5309 10 6 6.8403 -0.3945 -0.5211 11 7 6.7033 0.9139 -0.5613 12 14 8.5440 -1.1521 -0.4072 13 1 8.7786 -2.0227 -1.5872 14 1 9.5644 -0.0736 -0.3777 15 1 8.6434 -1.9623 0.8333 16 6 2.8100 -1.8826 0.7367 17 7 2.0301 -0.7142 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.1449 0.6276 2.7191 20 6 2.3438 -1.1431 3.5174 21 6 2.2378 -0.7170 4.8006 22 6 1.7586 0.5867 5.0764 23 6 0.8963 0.9373 6.0946 24 6 0.6942 2.3217 5.9875 25 6 1.4293 2.7531 4.9387 26 8 2.0677 1.7085 4.3932 27 1 -0.3632 0.5193 0.8868 28 1 -0.3633 0.5082 -0.8932 29 1 -0.3633 -1.0277 0.0064 30 1 2.3598 -0.0448 -2.0192 31 1 1.3067 -1.4403 -1.6226 32 1 4.3689 0.3082 -0.6754 33 1 7.4870 1.4847 -0.5314 34 1 3.6656 -2.0413 1.3930 35 1 2.1807 -2.7722 0.7131 36 1 2.8375 -2.0783 3.2981 37 1 2.5188 -1.3719 5.6120 38 1 0.4608 0.2757 6.8288 39 1 0.0712 2.9297 6.6267 40 1 1.4925 3.7752 4.5956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987847637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:02 Heat of formation + Delta-G solvation = 5.367861 kcal Electronic energy + Delta-G solvation = -23484.477517 eV Core-core repulsion = 20073.439892 eV Total energy + Delta-G solvation = -3411.037625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.29438 -41.21264 -38.88983 -35.82069 -35.00805 -33.73131 -33.19559 -32.73951 -30.14018 -29.52820 -26.75506 -25.81538 -25.33615 -22.95498 -22.51452 -21.62756 -20.96525 -19.63508 -19.25078 -18.60535 -17.81198 -17.11200 -16.79425 -16.34656 -16.18963 -15.46074 -15.35941 -15.16788 -14.77694 -14.68333 -14.26595 -13.92679 -13.67189 -13.49580 -13.37984 -13.24809 -13.14210 -13.07779 -12.81608 -12.67276 -12.26572 -12.24825 -12.00806 -11.63983 -11.50112 -11.04805 -11.01722 -10.81383 -10.64148 -9.57016 -8.97739 -8.85187 -7.92544 -5.21678 -0.34443 1.21069 1.48772 1.51380 1.57225 1.79130 2.22941 2.34711 2.57217 2.59178 3.38956 3.59818 3.86222 3.89158 3.94643 4.06302 4.14596 4.17329 4.21073 4.38053 4.45893 4.52403 4.69238 4.74932 4.78978 4.83839 4.87892 4.93944 5.06819 5.08330 5.13300 5.18946 5.24565 5.35730 5.37340 5.55494 5.60984 5.73717 6.28041 6.34755 6.69860 7.29848 7.34440 8.09729 8.32038 9.31047 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.004973 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.956829 B = 5629.060652 C = 6603.033137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.136 3.864 3 H 0.032 0.968 4 C -0.122 4.122 5 C 0.156 3.844 6 H 0.087 0.913 7 N -0.727 5.727 8 C -0.236 4.236 9 H 0.087 0.913 10 C -0.077 4.077 11 N -0.974 5.974 12 Si 0.971 3.029 13 H -0.274 1.274 14 H -0.304 1.304 15 H -0.277 1.277 16 C 0.079 3.921 17 N -0.599 5.599 18 C 0.540 3.460 19 O -0.569 6.569 20 C -0.214 4.214 21 C 0.003 3.997 22 C -0.017 4.017 23 C -0.185 4.185 24 C -0.227 4.227 25 C -0.043 4.043 26 O -0.168 6.168 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.368 0.632 33 H 0.248 0.752 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.157 0.843 37 H 0.197 0.803 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.892 -5.632 9.297 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.033 3.967 3 H 0.051 0.949 4 C -0.160 4.160 5 C 0.046 3.954 6 H 0.105 0.895 7 N -0.365 5.365 8 C -0.368 4.368 9 H 0.104 0.896 10 C -0.269 4.269 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.200 1.200 14 H -0.230 1.230 15 H -0.203 1.203 16 C -0.047 4.047 17 N -0.331 5.331 18 C 0.334 3.666 19 O -0.452 6.452 20 C -0.234 4.234 21 C -0.016 4.016 22 C -0.067 4.067 23 C -0.204 4.204 24 C -0.246 4.246 25 C -0.113 4.113 26 O -0.063 6.063 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.199 0.801 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.175 0.825 37 H 0.214 0.786 38 H 0.194 0.806 39 H 0.191 0.809 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.900 -5.246 9.205 17.478 hybrid contribution 1.114 0.701 0.009 1.317 sum -12.785 -4.545 9.215 16.402 Atomic orbital electron populations 1.21980 0.93493 1.02569 1.02083 1.21444 0.94947 0.94946 0.85411 0.94932 1.22960 0.97632 0.99972 0.95461 1.21664 0.86112 0.94445 0.93188 0.89537 1.42539 1.01363 1.05006 1.87630 1.19650 0.84399 0.92353 1.40386 0.89561 1.25562 1.01698 0.95663 1.03941 1.69845 1.29300 1.03629 1.59675 0.85248 0.79687 0.76691 0.78356 1.19995 1.23048 1.20293 1.23277 0.94625 0.87850 0.98907 1.48459 1.51364 1.28609 1.04694 1.17304 0.81411 0.84994 0.82931 1.90783 1.42645 1.28288 1.83483 1.22474 1.04426 1.03482 0.93003 1.21186 0.92226 0.90510 0.97684 1.20226 1.04386 0.87851 0.94232 1.22512 1.01446 0.96379 1.00024 1.21976 1.05373 0.95706 1.01507 1.24748 0.97165 0.92867 0.96483 1.84301 1.56923 1.16204 1.48849 0.94112 0.90215 0.91202 0.90821 0.86888 0.80072 0.94357 0.91855 0.88800 0.82502 0.78569 0.80634 0.80945 0.76956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.11 71.98 0.66 -3.37 16 2 C 0.14 4.59 3.45 45.35 0.16 4.75 16 3 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 4 C -0.12 -3.62 6.05 31.79 0.19 -3.42 16 5 C 0.16 5.49 3.69 46.38 0.17 5.66 16 6 H 0.09 2.80 8.13 -2.38 -0.02 2.78 16 7 N -0.73 -35.09 5.27 -316.38 -1.67 -36.75 16 8 C -0.24 -12.47 9.98 84.03 0.84 -11.63 16 9 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 10 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 11 N -0.97 -60.30 13.06 21.65 0.28 -60.01 16 12 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 14 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 16 C 0.08 2.49 6.14 86.85 0.53 3.02 16 17 N -0.60 -21.06 3.06 -798.58 -2.45 -23.50 16 18 C 0.54 20.18 7.20 85.06 0.61 20.79 16 19 O -0.57 -24.17 11.49 19.10 0.22 -23.95 16 20 C -0.21 -6.40 9.30 22.48 0.21 -6.19 16 21 C 0.00 0.09 9.95 22.50 0.22 0.31 16 22 C -0.02 -0.54 5.30 23.03 0.12 -0.42 16 23 C -0.18 -4.72 10.90 22.71 0.25 -4.47 16 24 C -0.23 -5.68 10.87 22.06 0.24 -5.44 16 25 C -0.04 -1.28 12.06 67.11 0.81 -0.47 16 26 O -0.17 -6.31 7.86 17.53 0.14 -6.18 16 27 H 0.04 1.35 6.88 -2.39 -0.02 1.33 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.11 2.50 7.85 -2.39 -0.02 2.48 16 32 H 0.37 20.15 7.82 -92.71 -0.72 19.42 16 33 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.06 2.22 7.22 -2.39 -0.02 2.20 16 35 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.16 3.85 6.85 -2.91 -0.02 3.83 16 37 H 0.20 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 40 H 0.21 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -74.99 334.94 4.35 -70.64 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: 0.32 Total: 37.09 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.48 Total: -4.73 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -3.83 Total: -120.27 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: 0.36 Total: -30.12 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.99 4.35 -70.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987847637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.003 kcal (2) G-P(sol) polarization free energy of solvation -74.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds