Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.32533 * 2 1 4 4 C 1.54905 * 110.36988 * 237.64285 * 2 1 3 5 5 C 1.55157 * 101.58441 * 204.15571 * 4 2 1 6 6 H 1.09009 * 110.86653 * 277.06831 * 5 4 2 7 7 N 1.46496 * 110.72330 * 153.86741 * 5 4 2 8 8 C 1.36933 * 120.00245 * 160.01887 * 7 5 4 9 9 H 1.08006 * 119.99645 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00264 * 179.71915 * 8 7 5 11 11 N 1.31621 * 119.99694 * 0.28361 * 10 8 7 12 12 Si 1.86796 * 120.00328 * 180.27680 * 10 8 7 13 13 H 1.48506 * 109.46985 * 60.00143 * 12 10 8 14 14 H 1.48497 * 109.47514 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47028 * 300.00577 * 12 10 8 16 16 C 1.54317 * 102.94248 * 35.49676 * 5 4 2 17 17 N 1.47022 * 107.27391 * 337.81139 * 16 5 4 18 18 C 1.34772 * 125.64539 * 178.97465 * 17 16 5 19 19 O 1.21591 * 119.99576 * 174.77304 * 18 17 16 20 20 C 1.47532 * 120.00510 * 354.76765 * 18 17 16 21 21 C 1.39710 * 120.19152 * 47.53978 * 20 18 17 22 22 C 1.37780 * 119.91005 * 179.97438 * 21 20 18 23 23 C 1.38548 * 120.30304 * 359.97438 * 22 21 20 24 24 C 1.38053 * 120.38787 * 0.02562 * 23 22 21 25 25 C 1.38715 * 120.08582 * 359.73223 * 24 23 22 26 26 O 1.35646 * 120.15017 * 180.28286 * 25 24 23 27 27 H 1.09000 * 109.47214 * 299.21787 * 1 2 3 28 28 H 1.09000 * 109.47453 * 59.21878 * 1 2 3 29 29 H 1.09004 * 109.47382 * 179.22412 * 1 2 3 30 30 H 1.08998 * 111.00429 * 86.07356 * 4 2 1 31 31 H 1.09002 * 111.00228 * 322.22562 * 4 2 1 32 32 H 0.97004 * 119.99958 * 340.01918 * 7 5 4 33 33 H 0.96998 * 119.99889 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.87855 * 97.23291 * 16 5 4 35 35 H 1.09003 * 109.88582 * 218.38842 * 16 5 4 36 36 H 1.08001 * 120.04148 * 359.97438 * 21 20 18 37 37 H 1.08001 * 119.85220 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.80761 * 179.97438 * 23 22 21 39 39 H 1.08007 * 119.95696 * 180.02562 * 24 23 22 40 40 H 0.96702 * 114.00489 * 270.23306 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0691 -0.7772 -1.2267 5 6 3.4777 -1.2006 -0.7328 6 1 4.1968 -0.3932 -0.8716 7 7 3.9250 -2.4144 -1.4203 8 6 5.2568 -2.7308 -1.4542 9 1 5.9775 -2.0857 -0.9737 10 6 5.6800 -3.8840 -2.1007 11 7 4.8017 -4.6704 -2.6859 12 14 7.4960 -4.3197 -2.1404 13 1 7.9964 -4.4827 -0.7517 14 1 7.6844 -5.5893 -2.8871 15 1 8.2512 -3.2329 -2.8141 16 6 3.2493 -1.4759 0.7684 17 7 2.0430 -0.7371 1.1691 18 6 1.4972 -0.7337 2.4014 19 8 0.5510 -0.0101 2.6451 20 6 2.0477 -1.6081 3.4545 21 6 3.4260 -1.6574 3.6773 22 6 3.9338 -2.4756 4.6627 23 6 3.0835 -3.2502 5.4351 24 6 1.7196 -3.2110 5.2256 25 6 1.1906 -2.3893 4.2412 26 8 -0.1499 -2.3454 4.0381 27 1 -0.3634 0.5016 0.8969 28 1 -0.3634 0.5259 -0.8829 29 1 -0.3634 -1.0276 -0.0139 30 1 2.1398 -0.1287 -2.0999 31 1 1.4511 -1.6496 -1.4390 32 1 3.2776 -2.9940 -1.8515 33 1 5.0973 -5.4764 -3.1373 34 1 3.1013 -2.5436 0.9310 35 1 4.1064 -1.1265 1.3440 36 1 4.0925 -1.0550 3.0779 37 1 4.9994 -2.5128 4.8345 38 1 3.4902 -3.8890 6.2051 39 1 1.0631 -3.8175 5.8321 40 1 -0.4719 -2.9932 3.3963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988162705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = -28.898659 kcal Electronic energy + Delta-G solvation = -23410.309941 eV Core-core repulsion = 19997.786408 eV Total energy + Delta-G solvation = -3412.523533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52037 -39.05197 -37.14819 -36.69206 -34.19732 -32.39689 -31.43231 -30.42477 -29.78695 -28.42760 -25.48476 -24.34401 -23.53871 -22.66073 -21.47008 -20.30260 -19.31256 -18.16436 -17.34711 -16.86732 -16.36211 -15.94039 -15.50678 -15.25593 -14.59899 -14.58258 -13.94970 -13.67031 -13.63138 -13.37533 -13.21264 -12.70140 -12.41127 -12.23399 -12.15670 -11.91020 -11.74350 -11.70699 -11.23639 -11.05552 -10.84000 -10.73978 -10.57726 -10.37216 -10.08980 -9.79232 -9.47101 -9.10435 -8.97697 -8.73762 -8.30203 -7.14257 -5.89318 -3.20458 0.90820 1.19228 2.86394 3.18639 3.36279 3.41413 3.42250 3.62126 4.12690 4.46215 4.58942 4.77116 4.89463 5.06406 5.10871 5.20538 5.24220 5.33095 5.46464 5.54714 5.61767 5.65747 5.79760 5.80951 5.86002 6.07548 6.11221 6.14404 6.17260 6.24577 6.33636 6.40127 6.45674 6.48591 6.64341 6.70374 6.84095 7.57862 7.58779 7.79907 8.27912 8.39511 9.39981 9.93638 10.28543 11.32597 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.005245 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.261418 B = 5337.601460 C = 6706.982150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.135 4.135 5 C 0.171 3.829 6 H 0.066 0.934 7 N -0.713 5.713 8 C -0.250 4.250 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.072 3.928 17 N -0.606 5.606 18 C 0.573 3.427 19 O -0.530 6.530 20 C -0.148 4.148 21 C -0.071 4.071 22 C -0.132 4.132 23 C -0.087 4.087 24 C -0.154 4.154 25 C 0.152 3.848 26 O -0.485 6.485 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.387 0.613 33 H 0.258 0.742 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 4.410 11.646 13.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.174 4.174 5 C 0.059 3.941 6 H 0.084 0.916 7 N -0.353 5.353 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.577 5.577 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.054 4.054 17 N -0.340 5.340 18 C 0.362 3.638 19 O -0.407 6.407 20 C -0.151 4.151 21 C -0.089 4.089 22 C -0.150 4.150 23 C -0.105 4.105 24 C -0.173 4.173 25 C 0.106 3.894 26 O -0.295 6.295 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.713 5.206 12.213 14.453 hybrid contribution 0.926 -1.050 -0.488 1.482 sum -4.787 4.156 11.725 13.329 Atomic orbital electron populations 1.22138 0.94361 1.02434 1.03181 1.21858 0.94771 0.95381 0.84561 0.90905 1.23134 0.97701 1.00318 0.96270 1.21191 0.93216 0.91084 0.88600 0.91635 1.42367 1.06032 1.23816 1.63048 1.19194 0.83921 1.05228 1.29739 0.91007 1.24764 0.97744 0.97491 1.00400 1.69648 1.32687 1.15159 1.40185 0.86268 0.84776 0.77548 0.77573 1.21143 1.21629 1.21113 1.23454 0.85092 0.96772 1.00061 1.48582 1.28694 1.48159 1.08522 1.17729 0.82636 0.82421 0.81049 1.90729 1.28052 1.41322 1.80647 1.20327 0.94224 1.01684 0.98889 1.21383 0.93263 0.97399 0.96853 1.21127 1.00375 0.97245 0.96275 1.21171 0.92785 0.97926 0.98634 1.21367 0.95892 1.00168 0.99845 1.18393 0.82873 0.94311 0.93818 1.84795 1.17765 1.61613 1.65336 0.89914 0.92175 0.92845 0.90084 0.90495 0.77859 0.93258 0.90816 0.92235 0.84720 0.85133 0.85315 0.84985 0.75291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.77 37.15 0.33 -1.98 16 2 C 0.14 2.04 3.74 -66.42 -0.25 1.79 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.09 6.11 -24.58 -0.15 -2.24 16 5 C 0.17 3.11 3.59 -66.10 -0.24 2.88 16 6 H 0.07 1.19 8.12 -51.92 -0.42 0.77 16 7 N -0.71 -16.46 5.18 -51.65 -0.27 -16.73 16 8 C -0.25 -6.45 9.98 -15.06 -0.15 -6.60 16 9 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 12 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 C 0.07 1.21 5.38 -3.07 -0.02 1.19 16 17 N -0.61 -9.73 3.24 -164.27 -0.53 -10.26 16 18 C 0.57 9.75 6.86 -12.47 -0.09 9.67 16 19 O -0.53 -10.27 14.27 -5.69 -0.08 -10.35 16 20 C -0.15 -2.26 5.43 -104.85 -0.57 -2.82 16 21 C -0.07 -0.95 8.52 -39.20 -0.33 -1.28 16 22 C -0.13 -1.51 10.02 -39.63 -0.40 -1.91 16 23 C -0.09 -0.92 10.03 -39.54 -0.40 -1.31 16 24 C -0.15 -1.78 9.98 -39.47 -0.39 -2.18 16 25 C 0.15 2.14 6.69 -38.69 -0.26 1.88 16 26 O -0.49 -6.68 12.49 -29.61 -0.37 -7.05 16 27 H 0.08 1.32 5.93 -51.93 -0.31 1.01 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 32 H 0.39 9.62 7.71 -40.82 -0.31 9.30 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 35 H 0.06 0.94 6.00 -51.93 -0.31 0.63 16 36 H 0.14 1.73 5.93 -52.49 -0.31 1.42 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.39 3.76 9.06 45.56 0.41 4.18 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -31.58 331.30 -8.15 -39.74 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.59 Total: 12.65 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.01 Total: -3.22 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.08 Total: -53.00 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.45 Total: -17.40 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.58 -8.15 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988162705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.839 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds