Wall clock time and date at job start Tue Mar 31 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 115.55020 * 2 1 4 4 C 1.53075 * 117.53274 * 145.71918 * 2 1 3 5 5 C 1.53003 * 117.49607 * 214.33583 * 2 1 3 6 6 H 1.08996 * 117.49875 * 144.97356 * 5 2 1 7 7 C 1.50697 * 117.49657 * 359.97265 * 5 2 1 8 8 C 1.35130 * 125.61243 * 120.09306 * 7 5 2 9 9 C 1.40370 * 107.11355 * 180.02562 * 8 7 5 10 10 C 1.36544 * 106.70821 * 359.97438 * 9 8 7 11 11 C 1.46655 * 125.98853 * 179.97438 * 10 9 8 12 12 O 1.21692 * 120.00053 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00049 * 0.02725 * 11 10 9 14 14 C 1.46494 * 120.00175 * 180.02562 * 13 11 10 15 15 C 1.53497 * 114.20977 * 154.99722 * 14 13 11 16 16 N 1.47062 * 87.98453 * 87.51813 * 15 14 13 17 17 C 1.36943 * 136.05579 * 207.08745 * 16 15 14 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27778 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48496 * 109.47031 * 59.99836 * 21 19 17 23 23 H 1.48497 * 109.47267 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47169 * 300.00118 * 21 19 17 25 25 C 1.47067 * 87.88602 * 27.34481 * 16 15 14 26 26 O 1.33929 * 125.61962 * 300.38118 * 7 5 2 27 27 H 1.08997 * 109.47198 * 205.67166 * 1 2 3 28 28 H 1.09007 * 109.46771 * 325.66325 * 1 2 3 29 29 H 1.09000 * 109.47277 * 85.66107 * 1 2 3 30 30 H 1.08994 * 117.51039 * 359.97438 * 4 2 1 31 31 H 1.09001 * 117.49481 * 214.94905 * 4 2 1 32 32 H 1.08001 * 126.44511 * 0.02562 * 8 7 5 33 33 H 1.08005 * 126.64400 * 180.02562 * 9 8 7 34 34 H 0.97006 * 119.99697 * 359.97438 * 13 11 10 35 35 H 1.09001 * 113.41658 * 21.79562 * 14 13 11 36 36 H 1.09000 * 113.46436 * 332.73441 * 15 14 13 37 37 H 1.09000 * 113.46708 * 202.30097 * 15 14 13 38 38 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 39 39 H 1.08994 * 113.46653 * 87.43736 * 25 16 15 40 40 H 1.08996 * 113.46465 * 217.87717 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2376 -1.1216 0.7645 5 6 2.2364 -1.1207 -0.7655 6 1 3.1710 -0.8745 -1.2694 7 6 1.3719 -2.1403 -1.4612 8 6 1.3712 -2.3976 -2.7878 9 6 0.4244 -3.4094 -3.0118 10 6 -0.1109 -3.7224 -1.7954 11 6 -1.1452 -4.7309 -1.5428 12 8 -1.5456 -4.9213 -0.4095 13 7 -1.6524 -5.4470 -2.5658 14 6 -2.6860 -6.4541 -2.3136 15 6 -3.5835 -6.7514 -3.5228 16 7 -2.5952 -7.7558 -3.9437 17 6 -2.1987 -8.3119 -5.1307 18 1 -2.6674 -8.0049 -6.0540 19 6 -1.1988 -9.2745 -5.1463 20 7 -0.6280 -9.6490 -4.0210 21 14 -0.6633 -10.0387 -6.7645 22 1 -0.1531 -8.9768 -7.6685 23 1 0.4119 -11.0312 -6.5115 24 1 -1.8225 -10.7151 -7.4002 25 6 -2.2248 -7.9050 -2.5283 26 8 0.4738 -2.9369 -0.8674 27 1 -0.3633 -0.9262 0.4452 28 1 -0.3633 0.8486 0.5797 29 1 -0.3634 0.0777 -1.0247 30 1 1.6131 -1.8595 1.2681 31 1 3.1730 -0.8756 1.2672 32 1 1.9840 -1.9155 -3.5351 33 1 0.1694 -3.8546 -3.9622 34 1 -1.3335 -5.2950 -3.4692 35 1 -3.2294 -6.2933 -1.3825 36 1 -3.6721 -5.9133 -4.2140 37 1 -4.5489 -7.1790 -3.2521 38 1 0.0709 -10.3214 -4.0320 39 1 -2.8319 -8.6368 -1.9956 40 1 -1.1558 -8.0498 -2.3724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030296842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:12 Heat of formation + Delta-G solvation = 66.286444 kcal Electronic energy + Delta-G solvation = -22630.376060 eV Core-core repulsion = 19221.980063 eV Total energy + Delta-G solvation = -3408.395997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.71515 -39.45076 -38.02061 -37.47645 -33.78437 -32.83383 -31.89967 -30.06670 -28.62896 -27.54049 -24.67946 -24.61167 -23.04699 -21.90405 -21.69265 -20.58131 -19.84626 -19.35500 -17.83303 -16.82057 -16.50230 -15.95091 -15.85649 -15.25528 -14.91339 -14.40554 -14.11744 -13.76909 -13.42734 -13.26092 -13.08076 -12.94094 -12.85452 -12.64381 -12.56900 -12.03464 -11.71603 -11.65624 -11.28770 -10.89132 -10.85871 -10.68322 -10.33134 -10.24258 -9.98672 -9.95443 -9.84001 -9.46280 -8.89935 -8.56611 -8.26852 -6.96369 -5.81045 -3.15672 1.12990 2.27607 2.39262 3.35799 3.40275 3.42197 3.44763 3.52746 3.78133 4.23103 4.39087 4.40691 4.58751 4.78839 4.91723 5.01610 5.05784 5.14533 5.39371 5.43160 5.47659 5.50085 5.57509 5.66689 5.74539 5.77387 5.82551 5.85161 6.08733 6.10700 6.16636 6.33208 6.34728 6.45176 6.72179 6.93613 7.16121 7.26499 7.53831 7.86958 7.93695 8.47125 8.97723 9.64883 10.56732 11.35401 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.003506 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.464854 B = 7983.574603 C = 8597.798056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 H 0.114 0.886 4 C -0.166 4.166 5 C -0.087 4.087 6 H 0.137 0.863 7 C 0.043 3.957 8 C -0.211 4.211 9 C -0.149 4.149 10 C -0.056 4.056 11 C 0.594 3.406 12 O -0.538 6.538 13 N -0.671 5.671 14 C 0.086 3.914 15 C 0.110 3.890 16 N -0.609 5.609 17 C -0.225 4.225 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.141 3.859 26 O -0.140 6.140 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.407 0.593 35 H 0.100 0.900 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.255 0.745 39 H 0.038 0.962 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 19.034 5.228 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.154 4.154 3 H 0.132 0.868 4 C -0.203 4.203 5 C -0.104 4.104 6 H 0.154 0.846 7 C -0.010 4.010 8 C -0.230 4.230 9 C -0.169 4.169 10 C -0.109 4.109 11 C 0.379 3.621 12 O -0.417 6.417 13 N -0.321 5.321 14 C -0.020 4.020 15 C -0.017 4.017 16 N -0.336 5.336 17 C -0.352 4.352 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.014 3.986 26 O -0.034 6.034 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.243 0.757 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.157 18.634 6.124 20.050 hybrid contribution 0.584 -0.658 -1.636 1.858 sum 4.742 17.976 4.488 19.125 Atomic orbital electron populations 1.21422 0.92260 1.02645 1.02257 1.22531 0.96093 0.94063 1.02743 0.86836 1.23256 1.03143 1.01588 0.92320 1.20668 0.98829 0.96484 0.94466 0.84557 1.21632 0.93050 0.94565 0.91716 1.21412 1.03985 1.02331 0.95304 1.22109 0.97930 0.98732 0.98135 1.21728 1.02322 0.99491 0.87361 1.16424 0.80399 0.79890 0.85343 1.90822 1.60866 1.68335 1.21645 1.45021 1.40145 1.37129 1.09782 1.22729 0.89812 0.90429 0.99035 1.22769 0.93366 0.92782 0.92782 1.45751 1.39353 1.46218 1.02286 1.18877 1.15406 1.17566 0.83327 0.90121 1.24809 0.99141 0.99086 0.97140 1.69819 1.28007 1.33843 1.24550 0.86205 0.78021 0.78911 0.82609 1.21031 1.21553 1.21164 1.22631 1.01390 0.89772 0.84793 1.84012 1.42615 1.40277 1.36538 0.91733 0.91849 0.92081 0.87743 0.87837 0.82867 0.82281 0.75679 0.88183 0.93679 0.93352 0.93491 0.94461 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.15 37.16 0.34 -0.87 16 2 C -0.14 -1.11 6.41 -90.58 -0.58 -1.69 16 3 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.17 -1.44 9.81 -26.69 -0.26 -1.71 16 5 C -0.09 -0.80 6.23 -91.77 -0.57 -1.37 16 6 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 7 C 0.04 0.54 5.90 -35.42 -0.21 0.33 16 8 C -0.21 -2.55 10.77 -39.89 -0.43 -2.98 16 9 C -0.15 -2.05 10.34 -39.39 -0.41 -2.46 16 10 C -0.06 -0.92 7.15 -36.80 -0.26 -1.18 16 11 C 0.59 11.10 7.78 -12.86 -0.10 11.00 16 12 O -0.54 -11.66 16.70 -0.27 0.00 -11.66 16 13 N -0.67 -12.13 5.38 -54.80 -0.29 -12.42 16 14 C 0.09 1.65 4.61 -67.68 -0.31 1.34 16 15 C 0.11 2.14 8.44 -8.51 -0.07 2.07 16 16 N -0.61 -14.99 3.78 -184.63 -0.70 -15.69 16 17 C -0.22 -6.07 10.75 -15.06 -0.16 -6.23 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 20 N -0.92 -26.87 11.50 55.49 0.64 -26.23 16 21 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.14 3.31 7.24 -8.37 -0.06 3.25 16 26 O -0.14 -2.21 9.60 -0.46 0.00 -2.22 16 27 H 0.06 0.74 7.25 -51.93 -0.38 0.36 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.10 7.87 -51.93 -0.41 0.69 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.16 1.94 7.40 -52.48 -0.39 1.55 16 34 H 0.41 6.95 7.60 -40.82 -0.31 6.64 16 35 H 0.10 1.85 7.45 -51.93 -0.39 1.46 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 2.05 7.12 -51.93 -0.37 1.68 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -32.57 341.94 -9.01 -41.58 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.59 Total: 5.57 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.19 Total: -0.72 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.35 Total: -54.33 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.01 Total: -13.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.57 -9.01 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030296842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.864 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds