Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 115.55020 * 2 1 4 4 C 1.53075 * 117.53274 * 145.71918 * 2 1 3 5 5 C 1.53003 * 117.49607 * 214.33583 * 2 1 3 6 6 H 1.08996 * 117.49875 * 144.97356 * 5 2 1 7 7 C 1.50697 * 117.49657 * 359.97265 * 5 2 1 8 8 C 1.35130 * 125.61243 * 120.09306 * 7 5 2 9 9 C 1.40370 * 107.11355 * 180.02562 * 8 7 5 10 10 C 1.36544 * 106.70821 * 359.97438 * 9 8 7 11 11 C 1.46655 * 125.98853 * 179.97438 * 10 9 8 12 12 O 1.21692 * 120.00053 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00049 * 0.02725 * 11 10 9 14 14 C 1.46494 * 120.00175 * 180.02562 * 13 11 10 15 15 C 1.53497 * 114.20977 * 154.99722 * 14 13 11 16 16 N 1.47062 * 87.98453 * 87.51813 * 15 14 13 17 17 C 1.36943 * 136.05579 * 207.08745 * 16 15 14 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27778 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48496 * 109.47031 * 59.99836 * 21 19 17 23 23 H 1.48497 * 109.47267 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47169 * 300.00118 * 21 19 17 25 25 C 1.47067 * 87.88602 * 27.34481 * 16 15 14 26 26 O 1.33929 * 125.61962 * 300.38118 * 7 5 2 27 27 H 1.08997 * 109.47198 * 205.67166 * 1 2 3 28 28 H 1.09007 * 109.46771 * 325.66325 * 1 2 3 29 29 H 1.09000 * 109.47277 * 85.66107 * 1 2 3 30 30 H 1.08994 * 117.51039 * 359.97438 * 4 2 1 31 31 H 1.09001 * 117.49481 * 214.94905 * 4 2 1 32 32 H 1.08001 * 126.44511 * 0.02562 * 8 7 5 33 33 H 1.08005 * 126.64400 * 180.02562 * 9 8 7 34 34 H 0.97006 * 119.99697 * 359.97438 * 13 11 10 35 35 H 1.09001 * 113.41658 * 21.79562 * 14 13 11 36 36 H 1.09000 * 113.46436 * 332.73441 * 15 14 13 37 37 H 1.09000 * 113.46708 * 202.30097 * 15 14 13 38 38 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 39 39 H 1.08994 * 113.46653 * 87.43736 * 25 16 15 40 40 H 1.08996 * 113.46465 * 217.87717 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2376 -1.1216 0.7645 5 6 2.2364 -1.1207 -0.7655 6 1 3.1710 -0.8745 -1.2694 7 6 1.3719 -2.1403 -1.4612 8 6 1.3712 -2.3976 -2.7878 9 6 0.4244 -3.4094 -3.0118 10 6 -0.1109 -3.7224 -1.7954 11 6 -1.1452 -4.7309 -1.5428 12 8 -1.5456 -4.9213 -0.4095 13 7 -1.6524 -5.4470 -2.5658 14 6 -2.6860 -6.4541 -2.3136 15 6 -3.5835 -6.7514 -3.5228 16 7 -2.5952 -7.7558 -3.9437 17 6 -2.1987 -8.3119 -5.1307 18 1 -2.6674 -8.0049 -6.0540 19 6 -1.1988 -9.2745 -5.1463 20 7 -0.6280 -9.6490 -4.0210 21 14 -0.6633 -10.0387 -6.7645 22 1 -0.1531 -8.9768 -7.6685 23 1 0.4119 -11.0312 -6.5115 24 1 -1.8225 -10.7151 -7.4002 25 6 -2.2248 -7.9050 -2.5283 26 8 0.4738 -2.9369 -0.8674 27 1 -0.3633 -0.9262 0.4452 28 1 -0.3633 0.8486 0.5797 29 1 -0.3634 0.0777 -1.0247 30 1 1.6131 -1.8595 1.2681 31 1 3.1730 -0.8756 1.2672 32 1 1.9840 -1.9155 -3.5351 33 1 0.1694 -3.8546 -3.9622 34 1 -1.3335 -5.2950 -3.4692 35 1 -3.2294 -6.2933 -1.3825 36 1 -3.6721 -5.9133 -4.2140 37 1 -4.5489 -7.1790 -3.2521 38 1 0.0709 -10.3214 -4.0320 39 1 -2.8319 -8.6368 -1.9956 40 1 -1.1558 -8.0498 -2.3724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030296842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = 45.772388 kcal Electronic energy + Delta-G solvation = -22631.265616 eV Core-core repulsion = 19221.980063 eV Total energy + Delta-G solvation = -3409.285553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.80111 -41.01913 -39.27452 -38.61970 -35.27777 -34.30223 -33.60501 -31.19612 -29.65457 -29.19145 -26.40628 -25.96046 -24.66309 -22.94795 -22.68165 -21.62327 -21.05875 -20.81279 -19.14573 -18.75409 -17.56568 -17.32044 -16.90821 -16.79051 -16.25305 -15.86599 -15.74315 -15.46053 -14.67179 -14.51610 -14.25119 -14.10713 -14.09305 -13.91266 -13.38621 -13.37057 -13.19551 -12.82232 -12.74377 -12.50332 -12.39665 -12.11419 -11.83566 -11.61404 -11.39560 -11.30581 -11.03083 -10.98282 -10.90869 -10.10374 -9.38471 -8.96139 -7.89335 -5.24771 -0.05103 1.22164 1.26265 1.47450 1.50475 1.56741 2.07459 2.47604 2.51014 2.85425 3.29309 3.36322 3.44796 3.59444 3.73328 3.77384 3.89040 3.90432 4.19899 4.41189 4.43309 4.49151 4.63284 4.70037 4.75544 4.78550 4.82021 4.84180 4.85516 4.96624 5.01718 5.03945 5.12340 5.23236 5.34474 5.40778 5.47071 5.60436 5.88113 5.91706 6.44343 6.88594 7.01681 7.60246 8.58228 9.27222 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.003506 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.464854 B = 7983.574603 C = 8597.798056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 H 0.147 0.853 4 C -0.171 4.171 5 C -0.097 4.097 6 H 0.170 0.830 7 C 0.048 3.952 8 C -0.215 4.215 9 C -0.130 4.130 10 C -0.102 4.102 11 C 0.595 3.405 12 O -0.579 6.579 13 N -0.666 5.666 14 C 0.107 3.893 15 C 0.120 3.880 16 N -0.633 5.633 17 C -0.227 4.227 18 H 0.092 0.908 19 C -0.066 4.066 20 N -0.954 5.954 21 Si 0.979 3.021 22 H -0.271 1.271 23 H -0.300 1.300 24 H -0.279 1.279 25 C 0.136 3.864 26 O -0.163 6.163 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.413 0.587 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.246 0.754 39 H 0.030 0.970 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 21.641 3.711 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 H 0.165 0.835 4 C -0.208 4.208 5 C -0.114 4.114 6 H 0.187 0.813 7 C -0.004 4.004 8 C -0.233 4.233 9 C -0.150 4.150 10 C -0.153 4.153 11 C 0.383 3.617 12 O -0.460 6.460 13 N -0.316 5.316 14 C 0.000 4.000 15 C -0.006 4.006 16 N -0.360 5.360 17 C -0.355 4.355 18 H 0.110 0.890 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.808 3.192 22 H -0.196 1.196 23 H -0.227 1.227 24 H -0.205 1.205 25 C 0.009 3.991 26 O -0.059 6.059 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.205 0.795 33 H 0.192 0.808 34 H 0.250 0.750 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.941 21.274 4.574 22.315 hybrid contribution 0.334 -1.362 -1.109 1.788 sum 5.274 19.913 3.465 20.889 Atomic orbital electron populations 1.21435 0.93696 1.01873 1.01866 1.22654 0.95016 0.95126 1.01347 0.83545 1.23295 1.04023 1.01397 0.92086 1.21059 0.99586 0.96046 0.94744 0.81294 1.22506 0.91685 0.93709 0.92504 1.21817 1.03868 1.01861 0.95800 1.22420 0.96901 0.98064 0.97608 1.21360 1.04116 1.01245 0.88626 1.16743 0.80365 0.79943 0.84651 1.90783 1.62423 1.69782 1.23055 1.44933 1.39977 1.36659 1.10038 1.22459 0.89665 0.88056 0.99771 1.22876 0.93026 0.92011 0.92654 1.45994 1.41096 1.47007 1.01916 1.19326 1.14742 1.16773 0.84673 0.88997 1.25646 0.99812 1.00227 1.00225 1.70037 1.28803 1.34640 1.26722 0.85141 0.77241 0.77913 0.78947 1.19649 1.22681 1.20482 1.22591 0.98956 0.92589 0.84982 1.84001 1.43616 1.40958 1.37293 0.94671 0.90079 0.92695 0.90509 0.85200 0.79451 0.80814 0.75035 0.87118 0.91380 0.91275 0.94474 0.95199 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.15 71.98 0.66 -1.68 16 2 C -0.12 -1.68 6.41 -10.77 -0.07 -1.75 16 3 H 0.15 1.10 8.14 -2.38 -0.02 1.08 16 4 C -0.17 -2.67 9.81 30.62 0.30 -2.37 16 5 C -0.10 -1.52 6.23 -11.54 -0.07 -1.59 16 6 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 7 C 0.05 1.15 5.90 24.97 0.15 1.30 16 8 C -0.21 -4.69 10.77 22.07 0.24 -4.45 16 9 C -0.13 -3.44 10.34 22.39 0.23 -3.21 16 10 C -0.10 -3.39 7.15 24.07 0.17 -3.21 16 11 C 0.59 22.96 7.78 86.44 0.67 23.63 16 12 O -0.58 -26.21 16.70 0.90 0.02 -26.19 16 13 N -0.67 -24.32 5.38 -445.52 -2.40 -26.71 16 14 C 0.11 4.12 4.61 45.55 0.21 4.33 16 15 C 0.12 4.48 8.44 83.18 0.70 5.19 16 16 N -0.63 -31.07 3.78 -738.05 -2.79 -33.86 16 17 C -0.23 -12.19 10.75 84.03 0.90 -11.28 16 18 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 19 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 20 N -0.95 -57.59 11.50 21.65 0.25 -57.34 16 21 Si 0.98 44.68 29.55 68.60 2.03 46.71 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 C 0.14 6.58 7.24 83.27 0.60 7.18 16 26 O -0.16 -5.26 9.60 0.19 0.00 -5.26 16 27 H 0.03 0.82 7.25 -2.39 -0.02 0.81 16 28 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.65 7.87 -2.39 -0.02 1.63 16 31 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.17 3.95 7.40 -2.91 -0.02 3.92 16 34 H 0.41 13.98 7.60 -92.70 -0.71 13.27 16 35 H 0.11 4.09 7.45 -2.39 -0.02 4.07 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 2.13 7.12 -2.39 -0.02 2.11 16 Total: -1.00 -73.27 341.94 2.62 -70.65 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.35 Total: 23.13 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.16 Total: 8.88 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -4.94 Total: -117.92 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: 0.02 Total: -31.45 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.27 2.62 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030296842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.423 kcal (2) G-P(sol) polarization free energy of solvation -73.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds