Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 115.54558 * 2 1 4 4 C 1.52998 * 117.49904 * 214.29359 * 2 1 3 5 5 C 1.52996 * 117.49814 * 145.67139 * 2 1 3 6 6 H 1.08999 * 117.49814 * 215.00635 * 5 2 1 7 7 C 1.50700 * 117.50086 * 0.02562 * 5 2 1 8 8 C 1.35126 * 125.61999 * 239.99798 * 7 5 2 9 9 C 1.40362 * 107.11945 * 179.97438 * 8 7 5 10 10 C 1.36549 * 106.70648 * 0.02562 * 9 8 7 11 11 C 1.46651 * 125.98962 * 179.97438 * 10 9 8 12 12 O 1.21694 * 120.00003 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99877 * 0.02562 * 11 10 9 14 14 C 1.46504 * 119.99882 * 180.02562 * 13 11 10 15 15 C 1.53492 * 114.20208 * 204.99967 * 14 13 11 16 16 N 1.47070 * 87.98410 * 220.34534 * 15 14 13 17 17 C 1.36938 * 136.05563 * 207.08872 * 16 15 14 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.47069 * 87.88199 * 27.34609 * 16 15 14 26 26 O 1.33935 * 125.61444 * 60.24515 * 7 5 2 27 27 H 1.08999 * 109.47027 * 274.32552 * 1 2 3 28 28 H 1.08997 * 109.47437 * 34.32943 * 1 2 3 29 29 H 1.09006 * 109.46993 * 154.32957 * 1 2 3 30 30 H 1.09002 * 117.49512 * 145.01571 * 4 2 1 31 31 H 1.09001 * 117.49808 * 0.02562 * 4 2 1 32 32 H 1.08001 * 126.43792 * 359.97438 * 8 7 5 33 33 H 1.07998 * 126.64670 * 179.97438 * 9 8 7 34 34 H 0.96995 * 119.99641 * 0.02562 * 13 11 10 35 35 H 1.08995 * 113.27864 * 338.06699 * 14 13 11 36 36 H 1.09004 * 113.46870 * 105.57115 * 15 14 13 37 37 H 1.08994 * 113.52671 * 335.13804 * 15 14 13 38 38 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 39 39 H 1.08999 * 113.46743 * 87.44054 * 25 16 15 40 40 H 1.09002 * 113.46485 * 217.87927 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7653 6 1 3.1713 -0.8746 1.2689 7 6 1.3721 -2.1405 1.4610 8 6 1.3702 -2.3969 2.7877 9 6 0.4240 -3.4091 3.0116 10 6 -0.1099 -3.7235 1.7947 11 6 -1.1423 -4.7338 1.5417 12 8 -1.5408 -4.9259 0.4080 13 7 -1.6500 -5.4495 2.5648 14 6 -2.6810 -6.4592 2.3119 15 6 -3.5801 -6.7567 3.5198 16 7 -3.5185 -8.1787 3.1498 17 6 -4.3224 -9.2754 3.3116 18 1 -5.2654 -9.1819 3.8297 19 6 -3.9248 -10.5074 2.8108 20 7 -2.7776 -10.6203 2.1755 21 14 -5.0210 -12.0036 3.0321 22 1 -6.3322 -11.7574 2.3799 23 1 -4.3743 -13.1874 2.4111 24 1 -5.2283 -12.2553 4.4808 25 6 -2.2105 -7.9059 2.5351 26 8 0.4824 -2.9453 0.8654 27 1 -0.3633 0.0775 1.0247 28 1 -0.3634 0.8486 -0.5795 29 1 -0.3633 -0.9263 -0.4452 30 1 3.1715 -0.8754 -1.2681 31 1 1.6112 -1.8586 -1.2681 32 1 1.9818 -1.9136 3.5353 33 1 0.1684 -3.8538 3.9620 34 1 -1.3326 -5.2961 3.4684 35 1 -3.2230 -6.2973 1.3803 36 1 -4.5788 -6.3286 3.4335 37 1 -3.1088 -6.5366 4.4777 38 1 -2.4998 -11.4811 1.8251 39 1 -1.3773 -7.9886 3.2329 40 1 -2.0424 -8.4568 1.6097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030296843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = 65.826409 kcal Electronic energy + Delta-G solvation = -22268.571619 eV Core-core repulsion = 18860.155673 eV Total energy + Delta-G solvation = -3408.415946 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.83515 -39.48984 -38.08766 -37.55352 -34.01745 -33.00364 -31.91846 -30.20081 -28.69892 -27.46657 -24.75993 -24.65178 -23.01267 -22.02402 -21.66802 -20.53935 -19.93496 -19.82370 -17.82088 -16.82061 -16.60377 -16.05992 -16.02764 -15.43772 -14.94941 -14.54806 -14.24457 -13.85872 -13.50006 -13.37233 -13.16993 -12.97880 -12.72160 -12.69658 -12.15670 -11.98803 -11.76939 -11.57390 -11.48108 -10.95442 -10.93034 -10.82138 -10.46842 -10.39668 -10.13578 -10.08708 -9.87183 -9.50511 -8.85921 -8.63913 -8.36804 -6.97308 -5.80910 -3.15744 1.01402 2.14927 2.29141 3.34467 3.38533 3.41804 3.44170 3.45371 3.65993 4.13692 4.32314 4.42655 4.52033 4.65385 4.77817 4.91366 4.98929 5.17037 5.31794 5.41867 5.43912 5.50142 5.51856 5.56907 5.60491 5.67789 5.73617 5.76580 5.95263 6.04497 6.13735 6.22837 6.33313 6.46451 6.62718 6.83205 7.16471 7.28395 7.50814 7.72035 7.92002 8.35305 8.97974 9.64654 10.54618 11.35997 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042370 B = 0.002736 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.687494 B =10232.053598 C =10314.640912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 H 0.114 0.886 4 C -0.166 4.166 5 C -0.089 4.089 6 H 0.137 0.863 7 C 0.045 3.955 8 C -0.213 4.213 9 C -0.153 4.153 10 C -0.055 4.055 11 C 0.591 3.409 12 O -0.527 6.527 13 N -0.694 5.694 14 C 0.089 3.911 15 C 0.112 3.888 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.084 0.916 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.917 3.083 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.144 3.856 26 O -0.139 6.139 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.399 0.601 35 H 0.120 0.880 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.256 0.744 39 H 0.029 0.971 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.973 21.870 0.451 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.154 4.154 3 H 0.132 0.868 4 C -0.203 4.203 5 C -0.106 4.106 6 H 0.155 0.845 7 C -0.008 4.008 8 C -0.232 4.232 9 C -0.174 4.174 10 C -0.109 4.109 11 C 0.376 3.624 12 O -0.405 6.405 13 N -0.346 5.346 14 C -0.016 4.016 15 C -0.015 4.015 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.102 0.898 19 C -0.203 4.203 20 N -0.563 5.563 21 Si 0.747 3.253 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.017 3.983 26 O -0.033 6.033 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.234 0.766 35 H 0.138 0.862 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.476 21.309 -0.735 23.756 hybrid contribution -0.064 -0.807 1.016 1.299 sum 10.412 20.502 0.281 22.996 Atomic orbital electron populations 1.21428 0.92218 1.02730 1.02258 1.22524 0.96125 0.94080 1.02631 0.86787 1.23251 1.03203 1.01613 0.92214 1.20681 0.98854 0.96562 0.94549 0.84529 1.21668 0.93122 0.94254 0.91707 1.21398 1.04103 1.02346 0.95335 1.22036 0.98213 0.99201 0.97919 1.21854 1.02021 0.99634 0.87343 1.16535 0.80427 0.79833 0.85611 1.90867 1.60423 1.67594 1.21591 1.45670 1.41158 1.38491 1.09255 1.23872 0.89258 0.87750 1.00681 1.22716 0.97212 0.87247 0.94371 1.45246 1.18691 1.03548 1.65369 1.18853 0.99016 0.84933 1.32177 0.89839 1.24854 0.97380 0.97648 1.00401 1.69825 1.21138 1.24227 1.41078 0.86130 0.79525 0.81984 0.77683 1.20896 1.21470 1.21073 1.22598 0.88621 0.88728 0.98317 1.84039 1.42749 1.40153 1.36381 0.92091 0.91772 0.91727 0.87789 0.87701 0.82860 0.82444 0.76641 0.86202 0.93385 0.94698 0.93387 0.95367 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.16 37.16 0.34 -0.80 16 2 C -0.14 -1.01 6.41 -90.62 -0.58 -1.59 16 3 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.17 -1.32 9.81 -26.73 -0.26 -1.59 16 5 C -0.09 -0.73 6.24 -91.77 -0.57 -1.30 16 6 H 0.14 0.79 8.14 -51.93 -0.42 0.36 16 7 C 0.05 0.51 5.89 -35.42 -0.21 0.30 16 8 C -0.21 -2.18 10.77 -39.89 -0.43 -2.60 16 9 C -0.15 -1.74 10.34 -39.39 -0.41 -2.14 16 10 C -0.06 -0.81 7.15 -36.80 -0.26 -1.07 16 11 C 0.59 10.24 7.78 -12.86 -0.10 10.14 16 12 O -0.53 -11.33 16.70 -0.27 0.00 -11.33 16 13 N -0.69 -10.96 5.37 -54.80 -0.29 -11.26 16 14 C 0.09 1.73 4.63 -67.68 -0.31 1.42 16 15 C 0.11 2.22 8.44 -8.51 -0.07 2.14 16 16 N -0.60 -15.45 3.78 -184.63 -0.70 -16.15 16 17 C -0.22 -6.24 10.75 -15.06 -0.16 -6.40 16 18 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -27.47 11.50 55.49 0.64 -26.83 16 21 Si 0.92 22.10 29.55 -169.99 -5.02 17.08 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C 0.14 3.44 7.23 -8.37 -0.06 3.38 16 26 O -0.14 -2.03 9.63 -0.49 0.00 -2.03 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.71 7.27 -51.93 -0.38 0.33 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.04 7.86 -51.93 -0.41 0.63 16 32 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.16 1.35 7.40 -52.49 -0.39 0.96 16 34 H 0.40 4.97 7.60 -40.82 -0.31 4.66 16 35 H 0.12 2.55 7.45 -51.93 -0.39 2.16 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 2.12 7.10 -51.93 -0.37 1.75 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -33.96 341.94 -9.01 -42.98 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.59 Total: 2.76 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -3.19 Total: -0.37 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.35 Total: -54.23 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.01 Total: -13.37 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.96 -9.01 -42.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030296843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.802 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds