Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 115.54558 * 2 1 4 4 C 1.52998 * 117.49904 * 214.29359 * 2 1 3 5 5 C 1.52996 * 117.49814 * 145.67139 * 2 1 3 6 6 H 1.08999 * 117.49814 * 215.00635 * 5 2 1 7 7 C 1.50700 * 117.50086 * 0.02562 * 5 2 1 8 8 C 1.35126 * 125.61999 * 239.99798 * 7 5 2 9 9 C 1.40362 * 107.11945 * 179.97438 * 8 7 5 10 10 C 1.36549 * 106.70648 * 0.02562 * 9 8 7 11 11 C 1.46651 * 125.98962 * 179.97438 * 10 9 8 12 12 O 1.21694 * 120.00003 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99877 * 0.02562 * 11 10 9 14 14 C 1.46504 * 119.99882 * 180.02562 * 13 11 10 15 15 C 1.53492 * 114.20208 * 204.99967 * 14 13 11 16 16 N 1.47070 * 87.98410 * 220.34534 * 15 14 13 17 17 C 1.36938 * 136.05563 * 207.08872 * 16 15 14 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.47069 * 87.88199 * 27.34609 * 16 15 14 26 26 O 1.33935 * 125.61444 * 60.24515 * 7 5 2 27 27 H 1.08999 * 109.47027 * 274.32552 * 1 2 3 28 28 H 1.08997 * 109.47437 * 34.32943 * 1 2 3 29 29 H 1.09006 * 109.46993 * 154.32957 * 1 2 3 30 30 H 1.09002 * 117.49512 * 145.01571 * 4 2 1 31 31 H 1.09001 * 117.49808 * 0.02562 * 4 2 1 32 32 H 1.08001 * 126.43792 * 359.97438 * 8 7 5 33 33 H 1.07998 * 126.64670 * 179.97438 * 9 8 7 34 34 H 0.96995 * 119.99641 * 0.02562 * 13 11 10 35 35 H 1.08995 * 113.27864 * 338.06699 * 14 13 11 36 36 H 1.09004 * 113.46870 * 105.57115 * 15 14 13 37 37 H 1.08994 * 113.52671 * 335.13804 * 15 14 13 38 38 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 39 39 H 1.08999 * 113.46743 * 87.44054 * 25 16 15 40 40 H 1.09002 * 113.46485 * 217.87927 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7653 6 1 3.1713 -0.8746 1.2689 7 6 1.3721 -2.1405 1.4610 8 6 1.3702 -2.3969 2.7877 9 6 0.4240 -3.4091 3.0116 10 6 -0.1099 -3.7235 1.7947 11 6 -1.1423 -4.7338 1.5417 12 8 -1.5408 -4.9259 0.4080 13 7 -1.6500 -5.4495 2.5648 14 6 -2.6810 -6.4592 2.3119 15 6 -3.5801 -6.7567 3.5198 16 7 -3.5185 -8.1787 3.1498 17 6 -4.3224 -9.2754 3.3116 18 1 -5.2654 -9.1819 3.8297 19 6 -3.9248 -10.5074 2.8108 20 7 -2.7776 -10.6203 2.1755 21 14 -5.0210 -12.0036 3.0321 22 1 -6.3322 -11.7574 2.3799 23 1 -4.3743 -13.1874 2.4111 24 1 -5.2283 -12.2553 4.4808 25 6 -2.2105 -7.9059 2.5351 26 8 0.4824 -2.9453 0.8654 27 1 -0.3633 0.0775 1.0247 28 1 -0.3634 0.8486 -0.5795 29 1 -0.3633 -0.9263 -0.4452 30 1 3.1715 -0.8754 -1.2681 31 1 1.6112 -1.8586 -1.2681 32 1 1.9818 -1.9136 3.5353 33 1 0.1684 -3.8538 3.9620 34 1 -1.3326 -5.2961 3.4684 35 1 -3.2230 -6.2973 1.3803 36 1 -4.5788 -6.3286 3.4335 37 1 -3.1088 -6.5366 4.4777 38 1 -2.4998 -11.4811 1.8251 39 1 -1.3773 -7.9886 3.2329 40 1 -2.0424 -8.4568 1.6097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030296843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = 43.402572 kcal Electronic energy + Delta-G solvation = -22269.543990 eV Core-core repulsion = 18860.155673 eV Total energy + Delta-G solvation = -3409.388316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.78103 -41.00840 -39.33962 -38.63081 -35.47745 -34.31255 -33.65571 -31.23488 -29.64398 -29.14470 -26.45229 -26.03334 -24.53266 -22.91299 -22.58208 -21.57075 -21.48557 -20.80749 -19.08815 -18.76531 -17.55653 -17.54876 -16.96070 -16.81403 -16.34193 -15.86295 -15.75912 -15.62894 -14.62029 -14.25536 -14.12623 -14.08829 -13.88453 -13.82757 -13.40753 -13.36878 -13.20020 -12.89892 -12.80358 -12.68392 -12.40352 -12.34784 -12.02758 -11.60711 -11.45943 -11.32817 -11.02267 -10.96048 -10.91457 -10.12266 -9.37096 -9.01344 -7.94185 -5.30409 -0.03143 1.22401 1.29174 1.45909 1.50266 1.56254 2.08901 2.38763 2.56086 2.85649 3.25667 3.33607 3.46640 3.62031 3.73575 3.73793 3.89334 3.93284 4.20439 4.23541 4.40562 4.44469 4.65541 4.71799 4.72195 4.76277 4.82062 4.85361 4.85866 4.97031 5.00572 5.04170 5.11830 5.18557 5.35604 5.42803 5.44373 5.59405 5.85513 5.91918 6.44089 6.84259 7.04684 7.54900 8.51711 9.22988 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042370 B = 0.002736 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.687494 B =10232.053598 C =10314.640912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.126 4.126 3 H 0.146 0.854 4 C -0.174 4.174 5 C -0.094 4.094 6 H 0.171 0.829 7 C 0.044 3.956 8 C -0.213 4.213 9 C -0.122 4.122 10 C -0.104 4.104 11 C 0.592 3.408 12 O -0.584 6.584 13 N -0.677 5.677 14 C 0.116 3.884 15 C 0.123 3.877 16 N -0.636 5.636 17 C -0.231 4.231 18 H 0.095 0.905 19 C -0.070 4.070 20 N -0.955 5.955 21 Si 0.987 3.013 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.271 1.271 25 C 0.143 3.857 26 O -0.169 6.169 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.129 0.871 31 H 0.074 0.926 32 H 0.191 0.809 33 H 0.189 0.811 34 H 0.419 0.581 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.249 0.751 39 H 0.033 0.967 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.038 24.334 2.820 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 H 0.164 0.836 4 C -0.211 4.211 5 C -0.112 4.112 6 H 0.189 0.811 7 C -0.008 4.008 8 C -0.231 4.231 9 C -0.142 4.142 10 C -0.156 4.156 11 C 0.380 3.620 12 O -0.465 6.465 13 N -0.329 5.329 14 C 0.010 3.990 15 C -0.002 4.002 16 N -0.363 5.363 17 C -0.359 4.359 18 H 0.112 0.888 19 C -0.263 4.263 20 N -0.603 5.603 21 Si 0.814 3.186 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.197 1.197 25 C 0.015 3.985 26 O -0.065 6.065 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.147 0.853 31 H 0.093 0.907 32 H 0.208 0.792 33 H 0.206 0.794 34 H 0.258 0.742 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.539 23.823 1.701 26.525 hybrid contribution -0.315 -1.410 0.267 1.469 sum 11.224 22.413 1.967 25.144 Atomic orbital electron populations 1.21429 0.93787 1.01726 1.01912 1.22631 0.94946 0.95182 1.01588 0.83619 1.23271 1.03990 1.01458 0.92382 1.21065 0.99627 0.95945 0.94534 0.81131 1.22519 0.91951 0.93571 0.92772 1.21853 1.03949 1.01845 0.95492 1.22487 0.96298 0.97841 0.97580 1.21376 1.03932 1.01458 0.88822 1.16932 0.80397 0.79931 0.84768 1.90831 1.62468 1.69467 1.23754 1.45282 1.40232 1.37258 1.10173 1.23143 0.89426 0.86340 1.00102 1.22828 0.98294 0.83818 0.95306 1.45541 1.19050 1.05380 1.66306 1.19327 0.99647 0.85856 1.31054 0.88771 1.25781 0.98938 1.00811 1.00791 1.70044 1.23195 1.24278 1.42819 0.85036 0.77679 0.77859 0.78047 1.20058 1.22269 1.19698 1.22536 0.88683 0.90943 0.96312 1.84018 1.43900 1.41063 1.37496 0.92501 0.90285 0.94851 0.85300 0.90708 0.79224 0.79359 0.74241 0.88395 0.91849 0.91160 0.94216 0.94972 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.16 71.98 0.66 -1.58 16 2 C -0.13 -1.57 6.41 -10.79 -0.07 -1.64 16 3 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.17 -2.55 9.81 30.59 0.30 -2.25 16 5 C -0.09 -1.29 6.24 -11.54 -0.07 -1.36 16 6 H 0.17 1.17 8.14 -2.39 -0.02 1.15 16 7 C 0.04 0.92 5.89 24.97 0.15 1.07 16 8 C -0.21 -3.62 10.77 22.07 0.24 -3.38 16 9 C -0.12 -2.43 10.34 22.39 0.23 -2.20 16 10 C -0.10 -3.03 7.15 24.07 0.17 -2.85 16 11 C 0.59 21.12 7.78 86.44 0.67 21.79 16 12 O -0.58 -26.77 16.70 0.90 0.02 -26.75 16 13 N -0.68 -21.11 5.37 -445.52 -2.39 -23.50 16 14 C 0.12 4.58 4.63 45.55 0.21 4.79 16 15 C 0.12 4.70 8.44 83.17 0.70 5.40 16 16 N -0.64 -32.82 3.78 -738.04 -2.79 -35.61 16 17 C -0.23 -12.99 10.75 84.03 0.90 -12.09 16 18 H 0.09 4.93 7.83 -2.91 -0.02 4.91 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 20 N -0.96 -59.37 11.50 21.65 0.25 -59.13 16 21 Si 0.99 46.04 29.55 68.60 2.03 48.07 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.14 7.01 7.23 83.26 0.60 7.61 16 26 O -0.17 -5.03 9.63 0.14 0.00 -5.03 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.03 0.77 7.27 -2.38 -0.02 0.75 16 30 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.56 7.86 -2.39 -0.02 1.55 16 32 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.19 2.41 7.40 -2.91 -0.02 2.39 16 34 H 0.42 9.52 7.60 -92.71 -0.70 8.81 16 35 H 0.10 4.37 7.45 -2.39 -0.02 4.35 16 36 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.03 1.82 7.10 -2.39 -0.02 1.80 16 Total: -1.00 -79.15 341.94 2.63 -76.53 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.35 Total: 15.71 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.16 Total: 9.71 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -4.93 Total: -118.24 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: 0.02 Total: -31.79 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -79.15 2.63 -76.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030296843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.929 kcal (2) G-P(sol) polarization free energy of solvation -79.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds