Wall clock time and date at job start Tue Mar 31 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 115.55088 * 2 1 4 4 C 1.53002 * 117.49773 * 214.29700 * 2 1 3 5 5 C 1.53004 * 117.49755 * 145.67508 * 2 1 3 6 6 H 1.08991 * 117.49774 * 359.97438 * 5 2 1 7 7 C 1.50707 * 117.49333 * 214.97620 * 5 2 1 8 8 C 1.35124 * 125.61023 * 119.72160 * 7 5 2 9 9 C 1.40372 * 107.10948 * 179.88108 * 8 7 5 10 10 C 1.36539 * 106.70689 * 0.37300 * 9 8 7 11 11 C 1.46656 * 125.98388 * 179.74633 * 10 9 8 12 12 O 1.21702 * 119.99863 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00372 * 0.03023 * 11 10 9 14 14 C 1.46506 * 120.00325 * 180.02562 * 13 11 10 15 15 C 1.53944 * 113.73879 * 253.73697 * 14 13 11 16 16 N 1.47810 * 86.03468 * 222.08059 * 15 14 13 17 17 C 1.36941 * 134.45463 * 204.63789 * 16 15 14 18 18 H 1.08002 * 119.99856 * 179.86625 * 17 16 15 19 19 C 1.38810 * 120.00192 * 359.87636 * 17 16 15 20 20 N 1.31624 * 119.99964 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00110 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47150 * 60.00015 * 21 19 17 23 23 H 1.48495 * 109.46873 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46943 * 299.99696 * 21 19 17 25 25 C 1.47581 * 91.05039 * 24.55343 * 16 15 14 26 26 O 1.33928 * 125.61646 * 300.02235 * 7 5 2 27 27 H 1.09001 * 109.47002 * 274.32394 * 1 2 3 28 28 H 1.08993 * 109.46955 * 34.32831 * 1 2 3 29 29 H 1.09000 * 109.47050 * 154.32660 * 1 2 3 30 30 H 1.08999 * 117.49462 * 359.97438 * 4 2 1 31 31 H 1.08995 * 117.49827 * 145.01947 * 4 2 1 32 32 H 1.07997 * 126.45010 * 359.97438 * 8 7 5 33 33 H 1.08004 * 126.64101 * 180.11603 * 9 8 7 34 34 H 0.96997 * 120.00009 * 359.97438 * 13 11 10 35 35 H 1.08996 * 112.94228 * 25.32301 * 14 13 11 36 36 H 1.09001 * 113.77242 * 336.34905 * 15 14 13 37 37 H 1.09001 * 113.77190 * 107.74277 * 15 14 13 38 38 H 0.97000 * 119.99732 * 179.97438 * 20 19 17 39 39 H 1.09003 * 113.76532 * 221.15293 * 25 16 15 40 40 H 1.09001 * 113.87497 * 89.76753 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 1.6113 -1.8579 1.2691 7 6 3.5294 -0.7807 1.4610 8 6 3.7596 -0.8846 2.7884 9 6 5.0828 -0.4726 3.0116 10 6 5.5965 -0.1261 1.7949 11 6 6.9530 0.3708 1.5421 12 8 7.2978 0.6487 0.4086 13 7 7.8177 0.5196 2.5651 14 6 9.1726 1.0165 2.3127 15 6 10.2593 -0.0696 2.4106 16 7 11.0610 0.9424 3.1302 17 6 12.4014 1.1391 3.3301 18 1 12.7425 1.9832 3.9112 19 6 13.3216 0.2539 2.7858 20 7 12.9058 -0.7750 2.0779 21 14 15.1501 0.5227 3.0578 22 1 15.4433 0.4949 4.5133 23 1 15.9150 -0.5538 2.3787 24 1 15.5453 1.8401 2.4982 25 6 9.8377 1.6563 3.5448 26 8 4.6375 -0.3203 0.8661 27 1 -0.3633 0.0775 1.0248 28 1 -0.3633 0.8486 -0.5795 29 1 -0.3633 -0.9262 -0.4452 30 1 1.6112 -1.8590 -1.2675 31 1 3.1715 -0.8755 -1.2681 32 1 3.0581 -1.2226 3.5367 33 1 5.5939 -0.4331 3.9622 34 1 7.5428 0.2984 3.4686 35 1 9.2408 1.6254 1.4112 36 1 9.9736 -0.9227 3.0259 37 1 10.6784 -0.3599 1.4471 38 1 13.5489 -1.3934 1.6972 39 1 9.9209 2.7415 3.4852 40 1 9.4266 1.3127 4.4941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030296844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:16 Heat of formation + Delta-G solvation = 61.042653 kcal Electronic energy + Delta-G solvation = -21997.983599 eV Core-core repulsion = 18589.360214 eV Total energy + Delta-G solvation = -3408.623385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.82040 -39.43514 -38.07593 -37.42448 -33.99809 -32.99601 -31.87861 -30.49461 -28.59630 -27.35403 -24.88288 -24.65408 -22.94387 -22.00067 -21.39608 -20.88900 -20.00766 -19.73655 -17.97902 -16.82809 -16.39573 -16.35268 -15.97443 -14.97298 -14.89468 -14.59744 -14.21265 -14.01663 -13.82851 -13.46543 -13.17620 -12.96443 -12.72579 -12.56406 -12.26335 -11.95012 -11.84168 -11.50795 -11.49327 -10.96585 -10.90577 -10.80583 -10.51208 -10.46747 -10.10868 -10.09138 -9.84712 -9.57192 -8.83278 -8.67373 -8.39101 -6.95822 -5.79518 -3.14111 1.01029 2.14362 2.29113 3.35177 3.39102 3.42308 3.44146 3.44973 3.65933 4.09467 4.39776 4.44051 4.44936 4.64901 4.77789 4.88848 4.92108 5.09207 5.23735 5.35244 5.40157 5.44383 5.51036 5.55966 5.59473 5.62609 5.73081 5.74322 5.89095 5.96300 6.13465 6.21768 6.34311 6.49168 6.63709 6.82668 7.19940 7.30710 7.52070 7.73038 7.93481 8.35969 9.00036 9.66505 10.51790 11.37122 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047614 B = 0.002583 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.919583 B =10839.179253 C =11005.648434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.086 4.086 6 H 0.137 0.863 7 C 0.040 3.960 8 C -0.211 4.211 9 C -0.154 4.154 10 C -0.054 4.054 11 C 0.590 3.410 12 O -0.527 6.527 13 N -0.697 5.697 14 C 0.094 3.906 15 C 0.154 3.846 16 N -0.606 5.606 17 C -0.227 4.227 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.916 3.084 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.114 3.886 26 O -0.141 6.141 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.399 0.601 35 H 0.114 0.886 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.256 0.744 39 H 0.052 0.948 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.168 -0.637 0.642 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.157 4.157 3 H 0.127 0.873 4 C -0.201 4.201 5 C -0.104 4.104 6 H 0.155 0.845 7 C -0.013 4.013 8 C -0.230 4.230 9 C -0.174 4.174 10 C -0.107 4.107 11 C 0.375 3.625 12 O -0.405 6.405 13 N -0.348 5.348 14 C -0.011 4.011 15 C 0.027 3.973 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.746 3.254 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.013 4.013 26 O -0.035 6.035 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.233 0.767 35 H 0.132 0.868 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.484 -0.446 -0.543 24.494 hybrid contribution 0.872 -0.258 1.010 1.359 sum -23.612 -0.704 0.467 23.627 Atomic orbital electron populations 1.21391 0.91982 1.02381 1.02228 1.22544 0.95569 0.94863 1.02727 0.87301 1.23242 1.03418 1.01229 0.92217 1.20654 0.91679 1.03477 0.94545 0.84511 1.21749 0.87153 1.00593 0.91774 1.21405 0.97496 1.08844 0.95275 1.22045 0.95402 1.02042 0.97921 1.21879 0.91544 1.09965 0.87347 1.16550 0.81740 0.78542 0.85660 1.90870 1.77833 1.50171 1.21603 1.45801 1.13608 1.66176 1.09262 1.24087 0.77322 0.99277 1.00374 1.22741 0.85848 0.90749 0.97919 1.45700 0.99737 1.27814 1.60043 1.18931 0.79047 1.08675 1.28824 0.90006 1.24839 0.98265 0.97100 1.00092 1.69818 1.33121 1.15423 1.38098 0.86150 0.84408 0.77249 0.77630 1.21114 1.21499 1.20934 1.22869 0.87378 0.96924 0.94117 1.84023 1.19061 1.63862 1.36551 0.91856 0.91653 0.92218 0.87698 0.87744 0.82807 0.82391 0.76659 0.86779 0.95140 0.90281 0.93398 0.92990 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.19 37.16 0.38 -0.28 16 2 C -0.14 -1.06 6.11 -90.61 -0.55 -1.61 16 3 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.16 -1.33 9.81 -26.73 -0.26 -1.60 16 5 C -0.09 -0.72 5.96 -91.76 -0.55 -1.26 16 6 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 7 C 0.04 0.46 6.80 -35.41 -0.24 0.22 16 8 C -0.21 -2.20 10.77 -39.89 -0.43 -2.63 16 9 C -0.15 -1.77 10.34 -39.39 -0.41 -2.18 16 10 C -0.05 -0.81 7.15 -36.80 -0.26 -1.07 16 11 C 0.59 10.35 7.78 -12.86 -0.10 10.25 16 12 O -0.53 -11.46 16.73 -0.28 0.00 -11.46 16 13 N -0.70 -11.09 5.36 -56.67 -0.30 -11.39 16 14 C 0.09 1.83 4.40 -70.15 -0.31 1.52 16 15 C 0.15 3.69 7.33 -2.84 -0.02 3.67 16 16 N -0.61 -15.53 3.70 -177.91 -0.66 -16.19 16 17 C -0.23 -6.37 10.70 -15.06 -0.16 -6.53 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -27.57 11.39 55.49 0.63 -26.94 16 21 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.11 2.25 8.69 -2.97 -0.03 2.22 16 26 O -0.14 -2.12 10.36 -0.44 0.00 -2.12 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 30 H 0.10 0.64 8.05 -51.93 -0.42 0.23 16 31 H 0.10 1.03 7.95 -51.93 -0.41 0.62 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.16 1.37 7.40 -52.48 -0.39 0.98 16 34 H 0.40 5.01 7.55 -40.82 -0.31 4.70 16 35 H 0.11 2.41 7.50 -51.93 -0.39 2.02 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 2.16 7.17 -51.93 -0.37 1.79 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -34.18 344.61 -8.83 -43.01 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.63 Total: 2.29 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -3.04 Total: 0.46 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.33 Total: -54.52 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.01 Total: -13.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.18 -8.83 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030296844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.053 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds