Wall clock time and date at job start Tue Mar 31 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 115.55088 * 2 1 4 4 C 1.53002 * 117.49773 * 214.29700 * 2 1 3 5 5 C 1.53004 * 117.49755 * 145.67508 * 2 1 3 6 6 H 1.08991 * 117.49774 * 359.97438 * 5 2 1 7 7 C 1.50707 * 117.49333 * 214.97620 * 5 2 1 8 8 C 1.35124 * 125.61023 * 119.72160 * 7 5 2 9 9 C 1.40372 * 107.10948 * 179.88108 * 8 7 5 10 10 C 1.36539 * 106.70689 * 0.37300 * 9 8 7 11 11 C 1.46656 * 125.98388 * 179.74633 * 10 9 8 12 12 O 1.21702 * 119.99863 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00372 * 0.03023 * 11 10 9 14 14 C 1.46506 * 120.00325 * 180.02562 * 13 11 10 15 15 C 1.53944 * 113.73879 * 253.73697 * 14 13 11 16 16 N 1.47810 * 86.03468 * 222.08059 * 15 14 13 17 17 C 1.36941 * 134.45463 * 204.63789 * 16 15 14 18 18 H 1.08002 * 119.99856 * 179.86625 * 17 16 15 19 19 C 1.38810 * 120.00192 * 359.87636 * 17 16 15 20 20 N 1.31624 * 119.99964 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00110 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47150 * 60.00015 * 21 19 17 23 23 H 1.48495 * 109.46873 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46943 * 299.99696 * 21 19 17 25 25 C 1.47581 * 91.05039 * 24.55343 * 16 15 14 26 26 O 1.33928 * 125.61646 * 300.02235 * 7 5 2 27 27 H 1.09001 * 109.47002 * 274.32394 * 1 2 3 28 28 H 1.08993 * 109.46955 * 34.32831 * 1 2 3 29 29 H 1.09000 * 109.47050 * 154.32660 * 1 2 3 30 30 H 1.08999 * 117.49462 * 359.97438 * 4 2 1 31 31 H 1.08995 * 117.49827 * 145.01947 * 4 2 1 32 32 H 1.07997 * 126.45010 * 359.97438 * 8 7 5 33 33 H 1.08004 * 126.64101 * 180.11603 * 9 8 7 34 34 H 0.96997 * 120.00009 * 359.97438 * 13 11 10 35 35 H 1.08996 * 112.94228 * 25.32301 * 14 13 11 36 36 H 1.09001 * 113.77242 * 336.34905 * 15 14 13 37 37 H 1.09001 * 113.77190 * 107.74277 * 15 14 13 38 38 H 0.97000 * 119.99732 * 179.97438 * 20 19 17 39 39 H 1.09003 * 113.76532 * 221.15293 * 25 16 15 40 40 H 1.09001 * 113.87497 * 89.76753 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 1.6113 -1.8579 1.2691 7 6 3.5294 -0.7807 1.4610 8 6 3.7596 -0.8846 2.7884 9 6 5.0828 -0.4726 3.0116 10 6 5.5965 -0.1261 1.7949 11 6 6.9530 0.3708 1.5421 12 8 7.2978 0.6487 0.4086 13 7 7.8177 0.5196 2.5651 14 6 9.1726 1.0165 2.3127 15 6 10.2593 -0.0696 2.4106 16 7 11.0610 0.9424 3.1302 17 6 12.4014 1.1391 3.3301 18 1 12.7425 1.9832 3.9112 19 6 13.3216 0.2539 2.7858 20 7 12.9058 -0.7750 2.0779 21 14 15.1501 0.5227 3.0578 22 1 15.4433 0.4949 4.5133 23 1 15.9150 -0.5538 2.3787 24 1 15.5453 1.8401 2.4982 25 6 9.8377 1.6563 3.5448 26 8 4.6375 -0.3203 0.8661 27 1 -0.3633 0.0775 1.0248 28 1 -0.3633 0.8486 -0.5795 29 1 -0.3633 -0.9262 -0.4452 30 1 1.6112 -1.8590 -1.2675 31 1 3.1715 -0.8755 -1.2681 32 1 3.0581 -1.2226 3.5367 33 1 5.5939 -0.4331 3.9622 34 1 7.5428 0.2984 3.4686 35 1 9.2408 1.6254 1.4112 36 1 9.9736 -0.9227 3.0259 37 1 10.6784 -0.3599 1.4471 38 1 13.5489 -1.3934 1.6972 39 1 9.9209 2.7415 3.4852 40 1 9.4266 1.3127 4.4941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030296844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:16 Heat of formation + Delta-G solvation = 38.585186 kcal Electronic energy + Delta-G solvation = -21998.957428 eV Core-core repulsion = 18589.360214 eV Total energy + Delta-G solvation = -3409.597214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.79388 -40.94668 -39.20499 -38.63877 -35.46827 -34.30927 -33.63019 -31.44239 -29.62576 -28.86456 -26.66145 -25.92290 -24.49243 -22.89112 -22.43225 -21.65767 -21.41838 -20.99097 -19.21481 -18.80054 -17.58368 -17.43765 -17.21170 -16.94683 -15.98899 -15.80660 -15.65275 -15.47303 -14.66548 -14.61831 -14.12186 -13.94921 -13.91385 -13.75170 -13.36760 -13.24273 -13.16905 -12.85259 -12.82053 -12.66204 -12.40465 -12.36821 -11.99654 -11.63743 -11.56717 -11.33000 -11.07173 -10.97149 -10.89268 -10.17500 -9.38602 -9.00067 -7.93165 -5.29089 -0.05525 1.21039 1.26725 1.45791 1.50029 1.56031 2.07964 2.38943 2.55441 2.83154 3.21697 3.31441 3.40800 3.59648 3.77908 3.81032 3.83389 3.92377 4.17999 4.25452 4.37400 4.45429 4.62822 4.68298 4.72810 4.82060 4.84320 4.87929 4.93049 4.97924 5.01301 5.07427 5.19065 5.20441 5.38235 5.41924 5.45902 5.59831 5.86204 5.89556 6.43553 6.86022 7.04249 7.56635 8.48337 9.23583 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047614 B = 0.002583 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.919583 B =10839.179253 C =11005.648434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.133 4.133 3 H 0.089 0.911 4 C -0.172 4.172 5 C -0.089 4.089 6 H 0.170 0.830 7 C 0.037 3.963 8 C -0.210 4.210 9 C -0.121 4.121 10 C -0.103 4.103 11 C 0.591 3.409 12 O -0.584 6.584 13 N -0.679 5.679 14 C 0.120 3.880 15 C 0.151 3.849 16 N -0.639 5.639 17 C -0.235 4.235 18 H 0.093 0.907 19 C -0.071 4.071 20 N -0.957 5.957 21 Si 0.985 3.015 22 H -0.272 1.272 23 H -0.297 1.297 24 H -0.275 1.275 25 C 0.126 3.874 26 O -0.174 6.174 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.192 0.808 33 H 0.191 0.809 34 H 0.419 0.581 35 H 0.094 0.906 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.249 0.751 39 H 0.069 0.931 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.652 -0.550 3.177 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 H 0.108 0.892 4 C -0.209 4.209 5 C -0.107 4.107 6 H 0.187 0.813 7 C -0.015 4.015 8 C -0.228 4.228 9 C -0.141 4.141 10 C -0.155 4.155 11 C 0.379 3.621 12 O -0.466 6.466 13 N -0.332 5.332 14 C 0.014 3.986 15 C 0.024 3.976 16 N -0.366 5.366 17 C -0.363 4.363 18 H 0.111 0.889 19 C -0.264 4.264 20 N -0.605 5.605 21 Si 0.812 3.188 22 H -0.198 1.198 23 H -0.223 1.223 24 H -0.201 1.201 25 C 0.001 3.999 26 O -0.069 6.069 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.209 0.791 33 H 0.208 0.792 34 H 0.258 0.742 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.013 -0.333 2.062 27.094 hybrid contribution 1.466 -0.289 0.217 1.510 sum -25.547 -0.622 2.280 25.656 Atomic orbital electron populations 1.21401 0.89740 1.03235 1.03121 1.22572 0.97078 0.93670 1.01857 0.89250 1.23272 1.02852 1.02412 0.92377 1.21000 0.90679 1.04472 0.94515 0.81318 1.22596 0.87051 0.98946 0.92900 1.21870 0.97483 1.08095 0.95370 1.22508 0.95661 0.98379 0.97597 1.21421 0.90902 1.14346 0.88821 1.16938 0.82965 0.77379 0.84836 1.90834 1.79168 1.52774 1.23776 1.45405 1.11944 1.65671 1.10160 1.23365 0.78281 0.96904 1.00025 1.22617 0.87445 0.91834 0.95664 1.46022 1.00535 1.29013 1.61012 1.19406 0.80587 1.08534 1.27767 0.88911 1.25762 1.02876 0.97262 1.00512 1.70039 1.34083 1.16596 1.39802 0.85058 0.78861 0.76942 0.77899 1.19772 1.22340 1.20069 1.23021 0.84403 0.97510 0.94974 1.83991 1.20192 1.64963 1.37780 0.90799 0.91398 0.90910 0.85348 0.90543 0.79077 0.79177 0.74243 0.88784 0.95150 0.94857 0.94246 0.91280 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.19 71.98 0.73 -0.21 16 2 C -0.13 -1.86 6.11 -10.79 -0.07 -1.92 16 3 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 4 C -0.17 -2.66 9.81 30.60 0.30 -2.36 16 5 C -0.09 -1.30 5.96 -11.53 -0.07 -1.36 16 6 H 0.17 1.36 8.14 -2.39 -0.02 1.34 16 7 C 0.04 0.80 6.80 24.97 0.17 0.97 16 8 C -0.21 -3.64 10.77 22.07 0.24 -3.40 16 9 C -0.12 -2.45 10.34 22.39 0.23 -2.22 16 10 C -0.10 -3.05 7.15 24.07 0.17 -2.87 16 11 C 0.59 21.26 7.78 86.44 0.67 21.93 16 12 O -0.58 -26.97 16.73 0.87 0.01 -26.96 16 13 N -0.68 -21.23 5.36 -451.41 -2.42 -23.65 16 14 C 0.12 4.73 4.40 46.75 0.21 4.94 16 15 C 0.15 7.49 7.33 86.44 0.63 8.13 16 16 N -0.64 -32.82 3.70 -716.77 -2.65 -35.48 16 17 C -0.23 -13.18 10.70 84.03 0.90 -12.28 16 18 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.96 -59.57 11.39 21.65 0.25 -59.33 16 21 Si 0.99 46.15 29.55 68.60 2.03 48.18 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 25 C 0.13 4.74 8.69 86.48 0.75 5.49 16 26 O -0.17 -5.31 10.36 0.26 0.00 -5.31 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.42 7.90 -2.39 -0.02 0.40 16 30 H 0.13 1.33 8.05 -2.39 -0.02 1.31 16 31 H 0.08 1.62 7.95 -2.39 -0.02 1.60 16 32 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.19 2.44 7.40 -2.91 -0.02 2.41 16 34 H 0.42 9.52 7.55 -92.71 -0.70 8.82 16 35 H 0.09 4.15 7.50 -2.39 -0.02 4.13 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.03 1.94 7.17 -2.39 -0.02 1.92 16 38 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 Total: -1.00 -79.23 344.61 2.91 -76.32 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.35 Total: 15.06 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.34 Total: 11.16 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -4.83 Total: -118.46 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: 0.02 Total: -32.27 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -79.23 2.91 -76.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030296844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.907 kcal (2) G-P(sol) polarization free energy of solvation -79.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds