Wall clock time and date at job start Tue Mar 31 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47151 * 2 1 4 4 C 1.50698 * 109.47576 * 120.00714 * 2 1 3 5 5 O 1.21282 * 119.99965 * 34.75268 * 4 2 1 6 6 N 1.34772 * 119.99758 * 214.76520 * 4 2 1 7 7 C 1.47356 * 126.79292 * 355.16231 * 6 4 2 8 8 C 1.56023 * 105.14957 * 182.06610 * 7 6 4 9 9 H 1.08993 * 116.89405 * 159.04761 * 8 7 6 10 10 C 1.57442 * 99.69044 * 32.50214 * 8 7 6 11 11 C 1.49290 * 126.94295 * 174.88959 * 6 4 2 12 12 H 1.09009 * 116.78787 * 16.27824 * 11 6 4 13 13 C 1.56016 * 104.09331 * 246.67361 * 11 6 4 14 14 N 1.47874 * 105.10292 * 288.76554 * 13 11 6 15 15 C 1.36930 * 126.94700 * 181.97845 * 14 13 11 16 16 H 1.08003 * 120.00421 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99848 * 0.02562 * 15 14 13 18 18 N 1.31616 * 120.00172 * 359.72762 * 17 15 14 19 19 Si 1.86806 * 119.99780 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47062 * 60.00570 * 19 17 15 21 21 H 1.48501 * 109.46816 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47212 * 300.00424 * 19 17 15 23 23 C 1.50704 * 109.46603 * 240.00305 * 2 1 3 24 24 C 1.34519 * 125.78870 * 119.99929 * 23 2 1 25 25 C 1.41380 * 106.84118 * 180.02562 * 24 23 2 26 26 C 1.34511 * 106.84052 * 0.02562 * 25 24 23 27 27 O 1.34297 * 125.79522 * 299.69327 * 23 2 1 28 28 H 1.09000 * 109.47531 * 64.79910 * 1 2 3 29 29 H 1.09003 * 109.47043 * 184.80471 * 1 2 3 30 30 H 1.09005 * 109.46998 * 304.79979 * 1 2 3 31 31 H 1.09000 * 110.43256 * 63.08043 * 7 6 4 32 32 H 1.08994 * 110.16191 * 300.92057 * 7 6 4 33 33 H 1.08995 * 112.53453 * 191.97871 * 10 8 7 34 34 H 1.09003 * 112.30831 * 64.44428 * 10 8 7 35 35 H 1.08998 * 110.32089 * 169.86235 * 13 11 6 36 36 H 1.08997 * 110.40126 * 47.71591 * 13 11 6 37 37 H 0.97002 * 119.99938 * 179.97438 * 18 17 15 38 38 H 1.08002 * 126.57361 * 0.03249 * 24 23 2 39 39 H 1.08002 * 126.57613 * 179.97438 * 25 24 23 40 40 H 1.07999 * 125.78641 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 8 1.4210 -1.6588 1.6751 6 7 3.1611 -0.2920 1.8364 7 6 4.0695 0.7717 1.3729 8 6 5.2294 0.8005 2.4160 9 1 6.1689 1.2513 2.0963 10 6 5.2760 -0.7250 2.8027 11 6 3.7383 -0.8079 3.1129 12 1 3.3648 -1.7684 3.4682 13 6 3.6070 0.3918 4.1015 14 7 4.6034 1.3822 3.6400 15 6 4.8897 2.5913 4.2156 16 1 5.6438 3.2310 3.7814 17 6 4.2107 2.9947 5.3571 18 7 3.2880 2.2175 5.8832 19 14 4.6019 4.6438 6.1427 20 1 4.3401 5.7316 5.1665 21 1 3.7450 4.8372 7.3401 22 1 6.0308 4.6736 6.5457 23 6 2.0322 -0.7104 -1.2306 24 6 2.8088 -0.1719 -2.1879 25 6 3.0375 -1.1846 -3.1476 26 6 2.3866 -2.2812 -2.7196 27 8 1.7852 -1.9901 -1.5546 28 1 -0.3634 0.4376 -0.9298 29 1 -0.3633 -1.0241 0.0861 30 1 -0.3633 0.5865 0.8439 31 1 3.5533 1.7316 1.3545 32 1 4.4565 0.5302 0.3831 33 1 5.8878 -0.9138 3.6847 34 1 5.5643 -1.3564 1.9623 35 1 3.8349 0.0714 5.1181 36 1 2.6034 0.8146 4.0548 37 1 2.8138 2.4992 6.6811 38 1 3.1853 0.8400 -2.2176 39 1 3.6219 -1.0946 -4.0513 40 1 2.3577 -3.2356 -3.2242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032622341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:48 Heat of formation + Delta-G solvation = 40.208017 kcal Electronic energy + Delta-G solvation = -23862.438225 eV Core-core repulsion = 20452.911383 eV Total energy + Delta-G solvation = -3409.526843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.62388 -40.11074 -38.04049 -34.04631 -33.56268 -32.83216 -31.44242 -29.08472 -28.61324 -28.51836 -25.26475 -24.69083 -23.21278 -21.78243 -21.27360 -20.03722 -19.76969 -18.47256 -17.63187 -17.00112 -16.39804 -16.02941 -15.66523 -15.10209 -14.77245 -14.11135 -13.98419 -13.56338 -13.34929 -12.97705 -12.83634 -12.71276 -12.41378 -12.07974 -11.97586 -11.70068 -11.55689 -11.44352 -11.25831 -11.01543 -10.86201 -10.78168 -10.59496 -10.27964 -10.10480 -9.96499 -9.65262 -9.53881 -8.73771 -8.44383 -8.01286 -6.95063 -5.78680 -3.13406 1.67929 2.54646 2.78679 3.18161 3.35722 3.36904 3.40575 3.42623 4.40224 4.59971 4.71291 4.91474 4.97447 5.07238 5.15990 5.16921 5.27299 5.37629 5.53993 5.62072 5.68199 5.74920 5.76762 5.85117 5.89281 5.93060 6.02885 6.14248 6.24949 6.28921 6.39869 6.42863 6.49299 6.57847 6.67467 7.12479 7.39864 7.46275 7.69376 8.05530 8.09127 8.54017 9.08087 9.69049 10.38251 11.33352 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.004377 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.741554 B = 6395.023349 C = 6477.766007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 H 0.116 0.884 4 C 0.534 3.466 5 O -0.545 6.545 6 N -0.601 5.601 7 C 0.083 3.917 8 C 0.141 3.859 9 H 0.107 0.893 10 C -0.152 4.152 11 C 0.097 3.903 12 H 0.114 0.886 13 C 0.174 3.826 14 N -0.597 5.597 15 C -0.233 4.233 16 H 0.080 0.920 17 C -0.005 4.005 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.008 3.992 24 C -0.206 4.206 25 C -0.214 4.214 26 C -0.044 4.044 27 O -0.164 6.164 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.255 0.745 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.106 -5.397 -15.673 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 H 0.134 0.866 4 C 0.321 3.679 5 O -0.423 6.423 6 N -0.334 5.334 7 C -0.043 4.043 8 C 0.032 3.968 9 H 0.125 0.875 10 C -0.191 4.191 11 C -0.005 4.005 12 H 0.131 0.869 13 C 0.049 3.951 14 N -0.322 5.322 15 C -0.361 4.361 16 H 0.098 0.902 17 C -0.201 4.201 18 N -0.566 5.566 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.043 4.043 24 C -0.225 4.225 25 C -0.233 4.233 26 C -0.112 4.112 27 O -0.060 6.060 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.568 -5.944 -15.046 16.188 hybrid contribution 0.319 1.075 0.179 1.136 sum -0.249 -4.869 -14.867 15.646 Atomic orbital electron populations 1.21684 0.91143 1.04041 1.02451 1.19885 0.98518 0.98703 0.87729 0.86576 1.19798 0.79924 0.83923 0.84276 1.90663 1.57174 1.28234 1.66220 1.49080 1.22845 1.36823 1.24643 1.23206 0.92983 0.90362 0.97733 1.23237 0.93808 0.91895 0.87827 0.87530 1.24224 0.95670 0.98073 1.01180 1.24348 0.92091 0.99234 0.84863 0.86852 1.21929 0.93562 0.85591 0.93979 1.45242 1.42301 1.17994 1.26616 1.19002 1.17722 0.92685 1.06697 0.90192 1.24814 0.98490 0.98631 0.98213 1.69904 1.26718 1.36785 1.23195 0.86196 0.77533 0.83255 0.78718 1.21159 1.21617 1.21104 1.21852 1.01752 0.82774 0.97909 1.21598 1.03605 1.01448 0.95834 1.21788 1.05591 0.93590 1.02381 1.24049 0.99366 1.00887 0.86896 1.84087 1.59452 1.27651 1.34775 0.91631 0.90808 0.91179 0.91010 0.92775 0.89722 0.91743 0.92583 0.93448 0.93509 0.83274 0.83478 0.78262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.92 37.16 0.33 -1.51 16 2 C -0.03 -0.40 2.79 -92.92 -0.26 -0.66 16 3 H 0.12 1.55 7.09 -51.93 -0.37 1.18 16 4 C 0.53 10.03 6.87 -10.99 -0.08 9.95 16 5 O -0.54 -11.91 16.53 5.56 0.09 -11.82 16 6 N -0.60 -11.25 2.93 -157.19 -0.46 -11.71 16 7 C 0.08 1.40 5.58 -1.96 -0.01 1.39 16 8 C 0.14 2.60 5.54 -62.34 -0.35 2.25 16 9 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 10 C -0.15 -2.61 6.84 -22.10 -0.15 -2.76 16 11 C 0.10 1.91 5.24 -62.55 -0.33 1.58 16 12 H 0.11 2.19 8.07 -51.92 -0.42 1.77 16 13 C 0.17 4.15 4.76 -1.67 -0.01 4.15 16 14 N -0.60 -14.15 3.02 -156.12 -0.47 -14.62 16 15 C -0.23 -6.10 10.37 -15.06 -0.16 -6.26 16 16 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 17 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 18 N -0.92 -26.48 10.56 55.49 0.59 -25.89 16 19 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.01 0.12 5.81 -35.62 -0.21 -0.09 16 24 C -0.21 -2.52 10.78 -39.70 -0.43 -2.95 16 25 C -0.21 -2.33 10.91 -39.70 -0.43 -2.77 16 26 C -0.04 -0.49 12.09 29.41 0.36 -0.14 16 27 O -0.16 -2.44 10.65 5.73 0.06 -2.38 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.29 7.88 -51.93 -0.41 0.88 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.47 7.47 -51.93 -0.39 1.08 16 36 H 0.05 1.29 7.67 -51.93 -0.40 0.89 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 38 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -32.20 331.58 -7.76 -39.97 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.73 Total: 3.11 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.81 Total: 1.96 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.35 Total: -52.22 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.15 Total: -14.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.20 -7.76 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032622341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.175 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds