Wall clock time and date at job start Tue Mar 31 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47151 * 2 1 4 4 C 1.50698 * 109.47576 * 120.00714 * 2 1 3 5 5 O 1.21282 * 119.99965 * 34.75268 * 4 2 1 6 6 N 1.34772 * 119.99758 * 214.76520 * 4 2 1 7 7 C 1.47356 * 126.79292 * 355.16231 * 6 4 2 8 8 C 1.56023 * 105.14957 * 182.06610 * 7 6 4 9 9 H 1.08993 * 116.89405 * 159.04761 * 8 7 6 10 10 C 1.57442 * 99.69044 * 32.50214 * 8 7 6 11 11 C 1.49290 * 126.94295 * 174.88959 * 6 4 2 12 12 H 1.09009 * 116.78787 * 16.27824 * 11 6 4 13 13 C 1.56016 * 104.09331 * 246.67361 * 11 6 4 14 14 N 1.47874 * 105.10292 * 288.76554 * 13 11 6 15 15 C 1.36930 * 126.94700 * 181.97845 * 14 13 11 16 16 H 1.08003 * 120.00421 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99848 * 0.02562 * 15 14 13 18 18 N 1.31616 * 120.00172 * 359.72762 * 17 15 14 19 19 Si 1.86806 * 119.99780 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47062 * 60.00570 * 19 17 15 21 21 H 1.48501 * 109.46816 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47212 * 300.00424 * 19 17 15 23 23 C 1.50704 * 109.46603 * 240.00305 * 2 1 3 24 24 C 1.34519 * 125.78870 * 119.99929 * 23 2 1 25 25 C 1.41380 * 106.84118 * 180.02562 * 24 23 2 26 26 C 1.34511 * 106.84052 * 0.02562 * 25 24 23 27 27 O 1.34297 * 125.79522 * 299.69327 * 23 2 1 28 28 H 1.09000 * 109.47531 * 64.79910 * 1 2 3 29 29 H 1.09003 * 109.47043 * 184.80471 * 1 2 3 30 30 H 1.09005 * 109.46998 * 304.79979 * 1 2 3 31 31 H 1.09000 * 110.43256 * 63.08043 * 7 6 4 32 32 H 1.08994 * 110.16191 * 300.92057 * 7 6 4 33 33 H 1.08995 * 112.53453 * 191.97871 * 10 8 7 34 34 H 1.09003 * 112.30831 * 64.44428 * 10 8 7 35 35 H 1.08998 * 110.32089 * 169.86235 * 13 11 6 36 36 H 1.08997 * 110.40126 * 47.71591 * 13 11 6 37 37 H 0.97002 * 119.99938 * 179.97438 * 18 17 15 38 38 H 1.08002 * 126.57361 * 0.03249 * 24 23 2 39 39 H 1.08002 * 126.57613 * 179.97438 * 25 24 23 40 40 H 1.07999 * 125.78641 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 8 1.4210 -1.6588 1.6751 6 7 3.1611 -0.2920 1.8364 7 6 4.0695 0.7717 1.3729 8 6 5.2294 0.8005 2.4160 9 1 6.1689 1.2513 2.0963 10 6 5.2760 -0.7250 2.8027 11 6 3.7383 -0.8079 3.1129 12 1 3.3648 -1.7684 3.4682 13 6 3.6070 0.3918 4.1015 14 7 4.6034 1.3822 3.6400 15 6 4.8897 2.5913 4.2156 16 1 5.6438 3.2310 3.7814 17 6 4.2107 2.9947 5.3571 18 7 3.2880 2.2175 5.8832 19 14 4.6019 4.6438 6.1427 20 1 4.3401 5.7316 5.1665 21 1 3.7450 4.8372 7.3401 22 1 6.0308 4.6736 6.5457 23 6 2.0322 -0.7104 -1.2306 24 6 2.8088 -0.1719 -2.1879 25 6 3.0375 -1.1846 -3.1476 26 6 2.3866 -2.2812 -2.7196 27 8 1.7852 -1.9901 -1.5546 28 1 -0.3634 0.4376 -0.9298 29 1 -0.3633 -1.0241 0.0861 30 1 -0.3633 0.5865 0.8439 31 1 3.5533 1.7316 1.3545 32 1 4.4565 0.5302 0.3831 33 1 5.8878 -0.9138 3.6847 34 1 5.5643 -1.3564 1.9623 35 1 3.8349 0.0714 5.1181 36 1 2.6034 0.8146 4.0548 37 1 2.8138 2.4992 6.6811 38 1 3.1853 0.8400 -2.2176 39 1 3.6219 -1.0946 -4.0513 40 1 2.3577 -3.2356 -3.2242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032622341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:47 Heat of formation + Delta-G solvation = 20.537659 kcal Electronic energy + Delta-G solvation = -23863.291196 eV Core-core repulsion = 20452.911383 eV Total energy + Delta-G solvation = -3410.379813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.55514 -41.63930 -39.57486 -35.53047 -35.11213 -33.75170 -33.17204 -30.75610 -30.23042 -29.52811 -26.99152 -26.08872 -24.75386 -22.68839 -22.54976 -21.49200 -21.16507 -19.97881 -19.03888 -18.25424 -18.01326 -17.29333 -17.01234 -16.44603 -16.33263 -15.77808 -15.41653 -14.98106 -14.58359 -14.47208 -13.87853 -13.68115 -13.62118 -13.52955 -13.39264 -13.31524 -13.08900 -12.81619 -12.68666 -12.64993 -12.54225 -12.31158 -12.15510 -12.08650 -11.86883 -11.52417 -11.06990 -10.80976 -10.68780 -9.57493 -9.39202 -8.90718 -7.83168 -5.19119 0.73874 1.46681 1.48843 1.51434 1.57549 1.71639 1.97612 2.16375 2.50008 3.31064 3.35487 3.52472 3.61306 3.76614 3.86916 3.93335 4.00777 4.10520 4.19196 4.22973 4.30775 4.56478 4.64169 4.71038 4.71948 4.82401 4.90417 4.95649 4.98881 5.03371 5.10597 5.11816 5.21438 5.22087 5.45016 5.52219 5.64364 5.65797 6.10154 6.23535 6.60716 7.03600 7.07232 7.71870 8.42417 9.27961 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.004377 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.741554 B = 6395.023349 C = 6477.766007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.019 4.019 3 H 0.132 0.868 4 C 0.526 3.474 5 O -0.586 6.586 6 N -0.605 5.605 7 C 0.091 3.909 8 C 0.137 3.863 9 H 0.138 0.862 10 C -0.131 4.131 11 C 0.097 3.903 12 H 0.110 0.890 13 C 0.189 3.811 14 N -0.615 5.615 15 C -0.231 4.231 16 H 0.097 0.903 17 C -0.069 4.069 18 N -0.958 5.958 19 Si 0.977 3.023 20 H -0.275 1.275 21 H -0.304 1.304 22 H -0.274 1.274 23 C -0.025 4.025 24 C -0.194 4.194 25 C -0.218 4.218 26 C -0.045 4.045 27 O -0.196 6.196 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.018 0.982 36 H 0.000 1.000 37 H 0.244 0.756 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -4.860 -18.994 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.040 4.040 3 H 0.150 0.850 4 C 0.315 3.685 5 O -0.467 6.467 6 N -0.337 5.337 7 C -0.033 4.033 8 C 0.031 3.969 9 H 0.155 0.845 10 C -0.170 4.170 11 C -0.006 4.006 12 H 0.128 0.872 13 C 0.063 3.937 14 N -0.340 5.340 15 C -0.360 4.360 16 H 0.115 0.885 17 C -0.262 4.262 18 N -0.607 5.607 19 Si 0.806 3.194 20 H -0.201 1.201 21 H -0.231 1.231 22 H -0.200 1.200 23 C -0.075 4.075 24 C -0.213 4.213 25 C -0.237 4.237 26 C -0.112 4.112 27 O -0.092 6.092 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.036 0.964 36 H 0.018 0.982 37 H 0.053 0.947 38 H 0.187 0.813 39 H 0.194 0.806 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.561 -5.392 -18.428 19.264 hybrid contribution -0.310 0.842 1.122 1.437 sum 1.251 -4.550 -17.305 17.937 Atomic orbital electron populations 1.21673 0.90796 1.02915 1.03605 1.19833 0.98837 0.99008 0.86307 0.84980 1.20616 0.79206 0.83553 0.85114 1.90632 1.58164 1.30200 1.67656 1.49184 1.23350 1.37149 1.23990 1.23139 0.91793 0.89463 0.98934 1.23650 0.95087 0.92165 0.86008 0.84480 1.24122 0.93023 0.97676 1.02178 1.24165 0.94666 0.97185 0.84602 0.87195 1.21504 0.91365 0.87216 0.93587 1.45481 1.42570 1.17498 1.28432 1.19510 1.16836 0.93499 1.06135 0.88537 1.25646 0.99043 1.02014 0.99471 1.70152 1.28443 1.38609 1.23483 0.85166 0.77296 0.79642 0.77306 1.20135 1.23093 1.20031 1.21747 1.04086 0.83209 0.98504 1.21944 1.01810 1.02465 0.95055 1.22172 1.05629 0.92843 1.03048 1.24867 0.98144 1.02523 0.85694 1.84068 1.60563 1.28189 1.36428 0.88840 0.92757 0.91867 0.92039 0.88735 0.89968 0.88549 0.96371 0.98221 0.94729 0.81289 0.80633 0.75017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.92 71.98 0.64 -2.94 16 2 C -0.02 -0.54 2.79 -12.29 -0.03 -0.58 16 3 H 0.13 3.28 7.09 -2.39 -0.02 3.26 16 4 C 0.53 19.82 6.87 87.66 0.60 20.42 16 5 O -0.59 -26.45 16.53 -3.03 -0.05 -26.50 16 6 N -0.60 -22.24 2.93 -769.62 -2.26 -24.49 16 7 C 0.09 2.84 5.58 87.26 0.49 3.33 16 8 C 0.14 4.69 5.54 47.07 0.26 4.95 16 9 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 10 C -0.13 -4.21 6.84 33.60 0.23 -3.98 16 11 C 0.10 3.85 5.24 46.93 0.25 4.10 16 12 H 0.11 4.41 8.07 -2.38 -0.02 4.39 16 13 C 0.19 9.44 4.76 87.16 0.42 9.85 16 14 N -0.62 -29.09 3.02 -647.83 -1.96 -31.05 16 15 C -0.23 -12.02 10.37 84.03 0.87 -11.15 16 16 H 0.10 4.60 7.83 -2.91 -0.02 4.57 16 17 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 18 N -0.96 -57.84 10.56 21.65 0.23 -57.62 16 19 Si 0.98 44.56 29.55 68.60 2.03 46.59 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C -0.03 -0.67 5.81 24.84 0.14 -0.53 16 24 C -0.19 -4.03 10.78 22.19 0.24 -3.79 16 25 C -0.22 -3.87 10.91 22.19 0.24 -3.63 16 26 C -0.05 -0.88 12.09 66.97 0.81 -0.07 16 27 O -0.20 -5.52 10.65 -2.40 -0.03 -5.54 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.67 7.69 -2.39 -0.02 1.65 16 30 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.06 2.08 7.88 -2.39 -0.02 2.06 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.02 1.02 7.47 -2.39 -0.02 1.01 16 36 H 0.00 -0.02 7.67 -2.39 -0.02 -0.04 16 37 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 40 H 0.23 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -73.91 331.58 4.62 -69.29 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.03 Total: 16.68 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.62 Total: 12.64 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -3.99 Total: -113.16 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.08 Total: -32.04 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.91 4.62 -69.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032622341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.828 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds