Wall clock time and date at job start Tue Mar 31 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.88773 * 2 1 4 4 C 1.54920 * 111.00234 * 123.87615 * 2 1 3 5 5 N 1.47424 * 104.83207 * 155.08602 * 4 2 1 6 6 C 1.34773 * 125.65191 * 155.90517 * 5 4 2 7 7 O 1.21594 * 119.99573 * 355.17796 * 6 5 4 8 8 C 1.47529 * 120.00365 * 175.17269 * 6 5 4 9 9 C 1.39707 * 120.18835 * 48.06984 * 8 6 5 10 10 C 1.37794 * 119.90378 * 179.69624 * 9 8 6 11 11 C 1.38539 * 120.30483 * 0.60185 * 10 9 8 12 12 C 1.38060 * 120.38955 * 359.67076 * 11 10 9 13 13 C 1.38714 * 120.08105 * 0.02562 * 12 11 10 14 14 O 1.35649 * 120.15060 * 179.97438 * 13 12 11 15 15 C 1.47026 * 108.70101 * 335.87143 * 5 4 2 16 16 C 1.54364 * 107.29074 * 1.09582 * 15 5 4 17 17 H 1.08995 * 110.75968 * 140.50691 * 16 15 5 18 18 N 1.46503 * 110.70224 * 263.79423 * 16 15 5 19 19 C 1.36941 * 119.99811 * 268.48783 * 18 16 15 20 20 H 1.08002 * 119.99771 * 359.97438 * 19 18 16 21 21 C 1.38816 * 119.99919 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99613 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00072 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46792 * 90.00013 * 23 21 19 25 25 H 1.48497 * 109.47188 * 210.00093 * 23 21 19 26 26 H 1.48500 * 109.46959 * 330.00574 * 23 21 19 27 27 H 1.08998 * 109.47538 * 300.70385 * 1 2 3 28 28 H 1.09006 * 109.46753 * 180.70162 * 1 2 3 29 29 H 1.08998 * 109.46913 * 60.70645 * 1 2 3 30 30 H 1.08998 * 110.36694 * 273.92567 * 4 2 1 31 31 H 1.09003 * 110.36207 * 36.14020 * 4 2 1 32 32 H 1.07995 * 120.04723 * 359.97438 * 9 8 6 33 33 H 1.08002 * 119.84717 * 180.29347 * 10 9 8 34 34 H 1.07996 * 119.81174 * 179.69717 * 11 10 9 35 35 H 1.07995 * 119.95873 * 180.02562 * 12 11 10 36 36 H 0.96697 * 114.00797 * 270.02888 * 14 13 12 37 37 H 1.09005 * 109.88108 * 120.47668 * 15 5 4 38 38 H 1.08994 * 109.88551 * 241.48524 * 15 5 4 39 39 H 0.97000 * 120.00389 * 88.48938 * 18 16 15 40 40 H 0.97001 * 119.99356 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 1.2008 5 7 3.4271 -1.2428 0.7740 6 6 4.4476 -1.5609 1.5948 7 8 4.3295 -1.4153 2.7962 8 6 5.7079 -2.0858 1.0357 9 6 6.3181 -1.4442 -0.0449 10 6 7.4985 -1.9358 -0.5584 11 6 8.0774 -3.0716 -0.0161 12 6 7.4821 -3.7188 1.0482 13 6 6.2970 -3.2341 1.5819 14 8 5.7105 -3.8691 2.6273 15 6 3.4674 -1.2744 -0.6953 16 6 2.0862 -0.8075 -1.2024 17 1 2.1923 -0.1693 -2.0796 18 7 1.2269 -1.9570 -1.4967 19 6 1.2060 -2.4911 -2.7575 20 1 1.8226 -2.0647 -3.5349 21 6 0.3913 -3.5799 -3.0366 22 7 0.3709 -4.0929 -4.2486 23 14 -0.6758 -4.3169 -1.6922 24 1 -1.9994 -3.6436 -1.6860 25 1 -0.8598 -5.7683 -1.9462 26 1 -0.0165 -4.1243 -0.3756 27 1 -0.3634 0.5247 0.8836 28 1 -0.3633 -1.0277 0.0126 29 1 -0.3633 0.5028 -0.8962 30 1 2.1559 -0.1711 2.0838 31 1 1.4507 -1.6688 1.4044 32 1 5.8677 -0.5615 -0.4742 33 1 7.9719 -1.4363 -1.3908 34 1 9.0001 -3.4529 -0.4280 35 1 7.9396 -4.6034 1.4659 36 1 5.0818 -4.5563 2.3677 37 1 4.2426 -0.6002 -1.0595 38 1 3.6678 -2.2892 -1.0389 39 1 0.6727 -2.3397 -0.7986 40 1 -0.1981 -4.8540 -4.4434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054404372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:43 Heat of formation + Delta-G solvation = -24.817355 kcal Electronic energy + Delta-G solvation = -23534.037269 eV Core-core repulsion = 20121.690715 eV Total energy + Delta-G solvation = -3412.346554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51310 -39.10598 -37.46947 -36.73200 -34.10083 -32.66788 -31.26019 -30.76092 -29.89041 -28.20415 -26.41261 -24.10830 -23.27229 -22.60199 -21.88105 -19.66630 -19.50264 -18.23442 -17.95357 -17.08290 -16.17939 -15.94181 -15.85407 -15.11694 -14.53128 -14.45667 -14.35434 -14.06937 -13.85256 -13.21429 -12.87023 -12.77885 -12.59360 -12.39452 -12.18915 -12.06543 -11.78350 -11.74177 -11.48526 -11.09860 -10.87773 -10.71775 -10.60501 -10.36999 -10.05924 -9.73259 -9.64803 -9.14589 -9.04955 -8.77776 -8.35492 -7.42701 -5.88936 -3.25897 0.87110 1.14857 2.81871 3.16655 3.28654 3.31399 3.37810 3.57986 4.10700 4.48103 4.50767 4.70897 4.83310 4.91937 5.03051 5.10263 5.17269 5.24823 5.31894 5.48878 5.57904 5.60138 5.70501 5.78812 5.80519 5.96647 6.04209 6.11543 6.13514 6.15058 6.23228 6.29304 6.37416 6.49812 6.59260 6.61826 6.66188 7.57385 7.73203 7.85708 8.29799 8.32695 9.06759 9.79283 9.97828 11.28792 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.005378 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.679836 B = 5205.208221 C = 5812.463055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 H 0.084 0.916 4 C 0.113 3.887 5 N -0.606 5.606 6 C 0.572 3.428 7 O -0.533 6.533 8 C -0.146 4.146 9 C -0.072 4.072 10 C -0.133 4.133 11 C -0.086 4.086 12 C -0.153 4.153 13 C 0.153 3.847 14 O -0.486 6.486 15 C 0.069 3.931 16 C 0.178 3.822 17 H 0.083 0.917 18 N -0.735 5.735 19 C -0.250 4.250 20 H 0.093 0.907 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.878 3.122 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.278 1.278 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.392 0.608 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.363 0.637 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.055 5.226 7.933 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.339 5.339 6 C 0.360 3.640 7 O -0.411 6.411 8 C -0.150 4.150 9 C -0.090 4.090 10 C -0.151 4.151 11 C -0.105 4.105 12 C -0.171 4.171 13 C 0.107 3.893 14 O -0.297 6.297 15 C -0.057 4.057 16 C 0.066 3.934 17 H 0.101 0.899 18 N -0.378 5.378 19 C -0.379 4.379 20 H 0.111 0.889 21 C -0.186 4.186 22 N -0.576 5.576 23 Si 0.709 3.291 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.204 1.204 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.249 0.751 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.198 0.802 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.391 5.577 8.694 15.377 hybrid contribution -1.020 -1.132 0.519 1.610 sum 10.372 4.445 9.213 14.567 Atomic orbital electron populations 1.21555 0.93551 1.02472 1.01377 1.22696 0.96848 0.98941 0.95325 0.89751 1.22271 0.82716 0.98273 0.97658 1.48403 1.11804 1.65792 1.07879 1.17746 0.82557 0.78059 0.85613 1.90790 1.82110 1.53805 1.14389 1.20288 0.97164 0.99179 0.98365 1.21340 0.95092 0.99386 0.93229 1.21111 0.96000 0.97133 1.00874 1.21173 0.99434 0.94835 0.95028 1.21378 0.96482 1.01683 0.97579 1.18412 0.92325 0.91606 0.86916 1.84782 1.61038 1.54464 1.29391 1.23398 1.01249 1.02597 0.78407 1.21187 0.87837 0.89210 0.95133 0.89915 1.42796 1.49971 1.34558 1.10427 1.19059 1.21858 1.10510 0.86517 0.88934 1.24648 0.99615 0.98280 0.96019 1.69692 1.42681 1.26357 1.18845 0.86656 0.81341 0.79040 0.82100 1.20814 1.21636 1.20419 0.93270 0.92167 0.91662 0.90875 0.91663 0.84753 0.85116 0.85255 0.84909 0.75059 0.92118 0.90237 0.80222 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.91 37.16 0.33 -1.52 16 2 C -0.12 -1.68 3.51 -88.47 -0.31 -1.99 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.11 1.76 6.36 -2.52 -0.02 1.74 16 5 N -0.61 -9.90 3.33 -171.71 -0.57 -10.47 16 6 C 0.57 10.02 7.12 -12.47 -0.09 9.93 16 7 O -0.53 -11.00 16.74 -4.66 -0.08 -11.08 16 8 C -0.15 -2.22 5.41 -104.85 -0.57 -2.79 16 9 C -0.07 -0.91 8.50 -39.20 -0.33 -1.24 16 10 C -0.13 -1.40 10.02 -39.63 -0.40 -1.79 16 11 C -0.09 -0.87 10.03 -39.54 -0.40 -1.26 16 12 C -0.15 -1.75 9.98 -39.47 -0.39 -2.15 16 13 C 0.15 2.19 6.69 -38.69 -0.26 1.93 16 14 O -0.49 -7.01 12.53 -28.60 -0.36 -7.37 16 15 C 0.07 1.09 5.48 -3.04 -0.02 1.08 16 16 C 0.18 3.02 3.39 -66.07 -0.22 2.79 16 17 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 18 N -0.74 -15.67 4.29 -51.63 -0.22 -15.90 16 19 C -0.25 -6.46 10.44 -15.06 -0.16 -6.62 16 20 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 22 N -0.93 -27.82 13.97 55.49 0.78 -27.04 16 23 Si 0.88 21.16 27.74 -169.99 -4.71 16.45 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.96 6.40 -51.93 -0.33 0.63 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.10 7.99 -51.93 -0.42 0.69 16 31 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 32 H 0.13 1.52 5.97 -52.49 -0.31 1.21 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.39 4.12 9.06 45.56 0.41 4.53 16 37 H 0.06 0.81 5.88 -51.93 -0.31 0.51 16 38 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 39 H 0.36 7.85 4.13 -40.82 -0.17 7.68 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -33.24 329.23 -7.64 -40.87 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.50 Total: 11.28 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.93 Total: -1.70 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.02 Total: -53.41 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.44 Total: -18.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.24 -7.64 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054404372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.056 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds