Wall clock time and date at job start Tue Mar 31 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.88773 * 2 1 4 4 C 1.54920 * 111.00234 * 123.87615 * 2 1 3 5 5 N 1.47424 * 104.83207 * 155.08602 * 4 2 1 6 6 C 1.34773 * 125.65191 * 155.90517 * 5 4 2 7 7 O 1.21594 * 119.99573 * 355.17796 * 6 5 4 8 8 C 1.47529 * 120.00365 * 175.17269 * 6 5 4 9 9 C 1.39707 * 120.18835 * 48.06984 * 8 6 5 10 10 C 1.37794 * 119.90378 * 179.69624 * 9 8 6 11 11 C 1.38539 * 120.30483 * 0.60185 * 10 9 8 12 12 C 1.38060 * 120.38955 * 359.67076 * 11 10 9 13 13 C 1.38714 * 120.08105 * 0.02562 * 12 11 10 14 14 O 1.35649 * 120.15060 * 179.97438 * 13 12 11 15 15 C 1.47026 * 108.70101 * 335.87143 * 5 4 2 16 16 C 1.54364 * 107.29074 * 1.09582 * 15 5 4 17 17 H 1.08995 * 110.75968 * 140.50691 * 16 15 5 18 18 N 1.46503 * 110.70224 * 263.79423 * 16 15 5 19 19 C 1.36941 * 119.99811 * 268.48783 * 18 16 15 20 20 H 1.08002 * 119.99771 * 359.97438 * 19 18 16 21 21 C 1.38816 * 119.99919 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99613 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00072 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46792 * 90.00013 * 23 21 19 25 25 H 1.48497 * 109.47188 * 210.00093 * 23 21 19 26 26 H 1.48500 * 109.46959 * 330.00574 * 23 21 19 27 27 H 1.08998 * 109.47538 * 300.70385 * 1 2 3 28 28 H 1.09006 * 109.46753 * 180.70162 * 1 2 3 29 29 H 1.08998 * 109.46913 * 60.70645 * 1 2 3 30 30 H 1.08998 * 110.36694 * 273.92567 * 4 2 1 31 31 H 1.09003 * 110.36207 * 36.14020 * 4 2 1 32 32 H 1.07995 * 120.04723 * 359.97438 * 9 8 6 33 33 H 1.08002 * 119.84717 * 180.29347 * 10 9 8 34 34 H 1.07996 * 119.81174 * 179.69717 * 11 10 9 35 35 H 1.07995 * 119.95873 * 180.02562 * 12 11 10 36 36 H 0.96697 * 114.00797 * 270.02888 * 14 13 12 37 37 H 1.09005 * 109.88108 * 120.47668 * 15 5 4 38 38 H 1.08994 * 109.88551 * 241.48524 * 15 5 4 39 39 H 0.97000 * 120.00389 * 88.48938 * 18 16 15 40 40 H 0.97001 * 119.99356 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 1.2008 5 7 3.4271 -1.2428 0.7740 6 6 4.4476 -1.5609 1.5948 7 8 4.3295 -1.4153 2.7962 8 6 5.7079 -2.0858 1.0357 9 6 6.3181 -1.4442 -0.0449 10 6 7.4985 -1.9358 -0.5584 11 6 8.0774 -3.0716 -0.0161 12 6 7.4821 -3.7188 1.0482 13 6 6.2970 -3.2341 1.5819 14 8 5.7105 -3.8691 2.6273 15 6 3.4674 -1.2744 -0.6953 16 6 2.0862 -0.8075 -1.2024 17 1 2.1923 -0.1693 -2.0796 18 7 1.2269 -1.9570 -1.4967 19 6 1.2060 -2.4911 -2.7575 20 1 1.8226 -2.0647 -3.5349 21 6 0.3913 -3.5799 -3.0366 22 7 0.3709 -4.0929 -4.2486 23 14 -0.6758 -4.3169 -1.6922 24 1 -1.9994 -3.6436 -1.6860 25 1 -0.8598 -5.7683 -1.9462 26 1 -0.0165 -4.1243 -0.3756 27 1 -0.3634 0.5247 0.8836 28 1 -0.3633 -1.0277 0.0126 29 1 -0.3633 0.5028 -0.8962 30 1 2.1559 -0.1711 2.0838 31 1 1.4507 -1.6688 1.4044 32 1 5.8677 -0.5615 -0.4742 33 1 7.9719 -1.4363 -1.3908 34 1 9.0001 -3.4529 -0.4280 35 1 7.9396 -4.6034 1.4659 36 1 5.0818 -4.5563 2.3677 37 1 4.2426 -0.6002 -1.0595 38 1 3.6678 -2.2892 -1.0389 39 1 0.6727 -2.3397 -0.7986 40 1 -0.1981 -4.8540 -4.4434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054404372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:42 Heat of formation + Delta-G solvation = -48.020612 kcal Electronic energy + Delta-G solvation = -23535.043438 eV Core-core repulsion = 20121.690715 eV Total energy + Delta-G solvation = -3413.352723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68419 -40.24981 -38.83478 -37.71394 -35.81160 -34.12429 -32.80301 -31.99141 -30.82680 -29.70558 -27.59164 -25.64931 -24.67267 -23.54396 -23.17302 -20.90688 -20.83532 -19.80801 -19.25824 -18.31992 -17.50542 -17.03375 -16.96861 -16.43343 -16.08050 -15.89826 -15.55105 -15.29561 -15.06352 -14.62375 -14.43365 -14.15825 -13.76995 -13.61857 -13.29890 -13.22192 -13.19117 -13.01243 -12.86083 -12.62790 -12.39222 -12.10931 -11.96282 -11.76428 -11.61770 -11.41789 -11.09660 -10.91718 -10.05600 -9.77654 -9.64047 -9.31392 -8.01199 -5.33526 -0.10172 0.25534 1.36491 1.36890 1.43616 1.56595 1.95286 2.47007 2.63241 3.16940 3.28637 3.32349 3.53697 3.71501 3.83279 3.86759 3.99934 4.10218 4.32403 4.35199 4.41900 4.55857 4.57403 4.62979 4.69580 4.79493 4.88533 4.94608 4.96384 5.15294 5.18720 5.25759 5.28604 5.32799 5.43022 5.48192 5.78798 5.80999 6.23029 6.41884 6.65266 7.00958 7.08492 7.84136 8.01389 9.19845 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.005378 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.679836 B = 5205.208221 C = 5812.463055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 H 0.114 0.886 4 C 0.109 3.891 5 N -0.605 5.605 6 C 0.570 3.430 7 O -0.574 6.574 8 C -0.179 4.179 9 C -0.079 4.079 10 C -0.130 4.130 11 C -0.077 4.077 12 C -0.155 4.155 13 C 0.129 3.871 14 O -0.505 6.505 15 C 0.081 3.919 16 C 0.167 3.833 17 H 0.091 0.909 18 N -0.738 5.738 19 C -0.220 4.220 20 H 0.071 0.929 21 C -0.055 4.055 22 N -0.979 5.979 23 Si 0.938 3.062 24 H -0.276 1.276 25 H -0.301 1.301 26 H -0.263 1.263 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.144 0.856 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.403 0.597 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.363 0.637 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.509 6.394 8.322 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 H 0.132 0.868 4 C -0.013 4.013 5 N -0.337 5.337 6 C 0.360 3.640 7 O -0.455 6.455 8 C -0.183 4.183 9 C -0.097 4.097 10 C -0.148 4.148 11 C -0.095 4.095 12 C -0.174 4.174 13 C 0.083 3.917 14 O -0.317 6.317 15 C -0.044 4.044 16 C 0.057 3.943 17 H 0.109 0.891 18 N -0.381 5.381 19 C -0.351 4.351 20 H 0.089 0.911 21 C -0.247 4.247 22 N -0.630 5.630 23 Si 0.767 3.233 24 H -0.202 1.202 25 H -0.228 1.228 26 H -0.189 1.189 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.184 0.816 35 H 0.170 0.830 36 H 0.261 0.739 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.198 0.802 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.858 6.790 9.109 17.158 hybrid contribution -1.342 -1.425 0.376 1.993 sum 11.516 5.365 9.485 15.854 Atomic orbital electron populations 1.21552 0.93183 1.01455 1.02684 1.22659 0.97052 0.99621 0.92735 0.86777 1.22344 0.82312 0.98089 0.98579 1.48466 1.11898 1.65366 1.07942 1.18178 0.83378 0.77248 0.85155 1.90750 1.83071 1.55627 1.16061 1.20332 0.96982 1.00635 1.00331 1.21525 0.95991 0.99640 0.92583 1.21534 0.95013 0.97064 1.01178 1.21659 1.00110 0.93969 0.93745 1.21661 0.95445 1.02403 0.97866 1.18765 0.93519 0.91978 0.87391 1.84737 1.61602 1.55044 1.30362 1.23193 1.01240 1.01849 0.78145 1.21470 0.87817 0.88204 0.96786 0.89100 1.42799 1.50860 1.35680 1.08723 1.19060 1.19327 1.09106 0.87584 0.91148 1.25293 1.01938 0.99620 0.97864 1.69846 1.44591 1.27478 1.21076 0.85681 0.80001 0.77438 0.80226 1.20232 1.22804 1.18872 0.90683 0.94326 0.91642 0.90257 0.93039 0.83864 0.81921 0.81601 0.82978 0.73868 0.89041 0.92728 0.80238 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.91 71.98 0.64 -2.73 16 2 C -0.10 -2.63 3.51 -9.40 -0.03 -2.66 16 3 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.11 3.25 6.36 86.86 0.55 3.80 16 5 N -0.60 -19.20 3.33 -815.44 -2.71 -21.92 16 6 C 0.57 19.93 7.12 86.69 0.62 20.54 16 7 O -0.57 -24.06 16.74 5.50 0.09 -23.97 16 8 C -0.18 -5.35 5.41 -20.01 -0.11 -5.46 16 9 C -0.08 -1.83 8.50 22.52 0.19 -1.64 16 10 C -0.13 -2.29 10.02 22.24 0.22 -2.07 16 11 C -0.08 -1.27 10.03 22.30 0.22 -1.05 16 12 C -0.16 -3.25 9.98 22.34 0.22 -3.03 16 13 C 0.13 3.63 6.69 22.85 0.15 3.78 16 14 O -0.51 -14.83 12.53 -80.13 -1.00 -15.83 16 15 C 0.08 2.44 5.48 86.74 0.48 2.91 16 16 C 0.17 5.36 3.39 46.19 0.16 5.52 16 17 H 0.09 2.82 8.09 -2.39 -0.02 2.80 16 18 N -0.74 -30.82 4.29 -317.26 -1.36 -32.18 16 19 C -0.22 -11.39 10.44 84.03 0.88 -10.51 16 20 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 21 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 22 N -0.98 -60.04 13.97 21.65 0.30 -59.74 16 23 Si 0.94 44.17 27.74 68.60 1.90 46.08 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 26 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.16 6.40 -2.38 -0.02 1.15 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.28 7.99 -2.39 -0.02 2.26 16 31 H 0.05 1.67 8.03 -2.39 -0.02 1.65 16 32 H 0.14 2.89 5.97 -2.91 -0.02 2.88 16 33 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.40 8.82 9.06 -74.06 -0.67 8.15 16 37 H 0.09 2.22 5.88 -2.38 -0.01 2.20 16 38 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 39 H 0.36 15.31 4.13 -92.71 -0.38 14.92 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -73.86 329.23 1.84 -72.02 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: -0.04 Total: 30.75 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.66 Total: 4.79 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -3.77 Total: -113.84 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.91 Total: -39.79 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.08 kcal Total: -73.86 1.84 -72.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054404372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.998 kcal (2) G-P(sol) polarization free energy of solvation -73.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds