Wall clock time and date at job start Tue Mar 31 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 110.91837 * 2 1 4 4 C 1.54914 * 111.00543 * 236.09647 * 2 1 3 5 5 N 1.47422 * 104.83103 * 204.91797 * 4 2 1 6 6 C 1.34780 * 125.64698 * 204.16234 * 5 4 2 7 7 O 1.21589 * 119.99677 * 355.14734 * 6 5 4 8 8 C 1.47529 * 119.99850 * 175.14363 * 6 5 4 9 9 C 1.39708 * 120.19237 * 46.98703 * 8 6 5 10 10 C 1.37795 * 119.90339 * 179.71816 * 9 8 6 11 11 C 1.38536 * 120.30224 * 0.58104 * 10 9 8 12 12 C 1.38063 * 120.39332 * 359.69229 * 11 10 9 13 13 C 1.38705 * 120.08157 * 0.02562 * 12 11 10 14 14 O 1.35648 * 120.14815 * 180.02562 * 13 12 11 15 15 C 1.47016 * 108.70794 * 24.12846 * 5 4 2 16 16 C 1.54327 * 107.27032 * 358.94115 * 15 5 4 17 17 H 1.09002 * 110.72246 * 219.26993 * 16 15 5 18 18 N 1.46493 * 110.72302 * 96.16921 * 16 15 5 19 19 C 1.36943 * 119.99973 * 86.45580 * 18 16 15 20 20 H 1.08005 * 119.99935 * 359.97438 * 19 18 16 21 21 C 1.38803 * 120.00017 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00272 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99976 * 180.27346 * 21 19 18 24 24 H 1.48497 * 109.46938 * 179.72373 * 23 21 19 25 25 H 1.48499 * 109.46862 * 299.72472 * 23 21 19 26 26 H 1.48505 * 109.46789 * 59.72324 * 23 21 19 27 27 H 1.09009 * 109.47360 * 296.09939 * 1 2 3 28 28 H 1.08994 * 109.47265 * 56.09771 * 1 2 3 29 29 H 1.08998 * 109.47536 * 176.09844 * 1 2 3 30 30 H 1.09001 * 110.36261 * 86.08061 * 4 2 1 31 31 H 1.08997 * 110.45598 * 323.80017 * 4 2 1 32 32 H 1.07996 * 120.04284 * 0.02562 * 9 8 6 33 33 H 1.08001 * 119.84212 * 180.27404 * 10 9 8 34 34 H 1.08003 * 119.80482 * 179.71629 * 11 10 9 35 35 H 1.07998 * 119.95941 * 180.02562 * 12 11 10 36 36 H 0.96703 * 114.00425 * 269.97510 * 14 13 12 37 37 H 1.09000 * 109.88729 * 239.52334 * 15 5 4 38 38 H 1.09001 * 110.01484 * 118.42768 * 15 5 4 39 39 H 0.96997 * 120.00149 * 266.45975 * 18 16 15 40 40 H 0.97003 * 120.00343 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2431 -0.7733 6 6 4.4480 -1.5604 -1.5939 7 8 4.2761 -1.5832 -2.7974 8 6 5.7742 -1.8799 -1.0320 9 6 5.8868 -2.7634 0.0444 10 6 7.1289 -3.0621 0.5609 11 6 8.2668 -2.4809 0.0254 12 6 8.1693 -1.6018 -1.0347 13 6 6.9277 -1.2942 -1.5709 14 8 6.8304 -0.4310 -2.6128 15 6 3.4674 -1.2742 0.6960 16 6 2.0861 -0.8079 1.2023 17 1 2.1919 -0.1724 2.0815 18 7 1.2267 -1.9574 1.4962 19 6 1.2814 -2.5562 2.7265 20 1 1.9584 -2.1814 3.4800 21 6 0.4676 -3.6456 3.0049 22 7 -0.3571 -4.1028 2.0866 23 14 0.5367 -4.4578 4.6858 24 1 -0.4276 -5.5862 4.7303 25 1 1.9088 -4.9692 4.9323 26 1 0.1837 -3.4635 5.7308 27 1 -0.3634 0.4521 0.9229 28 1 -0.3633 0.5732 -0.8529 29 1 -0.3634 -1.0252 -0.0699 30 1 2.1560 -0.1720 -2.0836 31 1 1.4524 -1.6704 -1.4042 32 1 5.0020 -3.2153 0.4678 33 1 7.2152 -3.7486 1.3901 34 1 9.2359 -2.7173 0.4394 35 1 9.0610 -1.1532 -1.4470 36 1 6.7246 0.4934 -2.3493 37 1 4.2425 -0.5998 1.0600 38 1 3.6661 -2.2884 1.0424 39 1 0.6190 -2.2943 0.8194 40 1 -0.9261 -4.8639 2.2813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054404379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:47 Heat of formation + Delta-G solvation = -28.914654 kcal Electronic energy + Delta-G solvation = -23431.409673 eV Core-core repulsion = 20018.885446 eV Total energy + Delta-G solvation = -3412.524227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44235 -39.01153 -37.33736 -36.72647 -33.95629 -32.60323 -31.13061 -30.44602 -29.85500 -27.75421 -26.27424 -24.11099 -23.48525 -22.53935 -21.82912 -19.60644 -19.30133 -18.23705 -17.62851 -16.85846 -16.14017 -15.98079 -15.35400 -15.26595 -14.59561 -14.54506 -14.09420 -13.85909 -13.66519 -13.08861 -13.03792 -12.73791 -12.35422 -12.33159 -12.03881 -11.96280 -11.78675 -11.47419 -11.15420 -10.95662 -10.80611 -10.71363 -10.44948 -10.32031 -9.96146 -9.70272 -9.61104 -9.11008 -8.99228 -8.75749 -8.23011 -7.10430 -5.87141 -3.17595 0.89625 1.17930 2.92138 3.27310 3.36920 3.42007 3.43507 3.61286 4.08899 4.49357 4.61068 4.78522 4.90046 5.03850 5.15327 5.22431 5.32182 5.34713 5.49457 5.59711 5.62276 5.75432 5.81219 5.90252 5.94003 6.14817 6.17377 6.19660 6.24877 6.32128 6.33341 6.37291 6.50928 6.61282 6.67017 6.73292 6.90327 7.56406 7.59626 7.85530 8.30570 8.43429 9.42511 9.97226 10.32114 11.34785 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.005104 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.062997 B = 5484.537354 C = 6762.630754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.603 5.603 6 C 0.570 3.430 7 O -0.534 6.534 8 C -0.146 4.146 9 C -0.070 4.070 10 C -0.133 4.133 11 C -0.088 4.088 12 C -0.156 4.156 13 C 0.150 3.850 14 O -0.484 6.484 15 C 0.069 3.931 16 C 0.172 3.828 17 H 0.070 0.930 18 N -0.712 5.712 19 C -0.249 4.249 20 H 0.071 0.929 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.285 1.285 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.389 0.611 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.387 0.613 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.313 8.391 -2.866 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 H 0.096 0.904 4 C -0.006 4.006 5 N -0.335 5.335 6 C 0.358 3.642 7 O -0.411 6.411 8 C -0.149 4.149 9 C -0.089 4.089 10 C -0.151 4.151 11 C -0.107 4.107 12 C -0.174 4.174 13 C 0.104 3.896 14 O -0.294 6.294 15 C -0.057 4.057 16 C 0.059 3.941 17 H 0.088 0.912 18 N -0.353 5.353 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.203 4.203 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.212 1.212 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.245 0.755 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.223 0.777 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.311 7.776 -3.720 15.858 hybrid contribution -0.122 -0.332 1.053 1.111 sum 13.189 7.444 -2.667 15.378 Atomic orbital electron populations 1.21543 0.93311 1.03013 1.00996 1.22609 0.96991 0.98412 0.95315 0.90351 1.22270 0.82769 0.98370 0.97215 1.48372 1.11735 1.65647 1.07786 1.17732 0.83203 0.77574 0.85696 1.90790 1.83617 1.52433 1.14289 1.20336 0.93432 1.02857 0.98292 1.21539 0.98970 0.95354 0.93019 1.21158 0.92035 1.00858 1.01030 1.21172 0.98874 0.95400 0.95216 1.21344 0.96860 1.01500 0.97703 1.18408 0.90936 0.93195 0.87071 1.84822 1.95230 1.19913 1.29422 1.23422 1.01476 1.02200 0.78587 1.21216 0.88300 0.89893 0.94647 0.91193 1.42453 1.45381 1.32773 1.14706 1.19170 1.18726 1.09489 0.90572 0.91060 1.24742 0.98898 0.98854 0.97851 1.69643 1.27171 1.27492 1.33273 0.86289 0.77218 0.78914 0.83836 1.21696 1.21238 1.21179 0.92071 0.93636 0.91172 0.91306 0.91138 0.84151 0.85071 0.85359 0.85032 0.75492 0.92811 0.90234 0.77698 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.85 37.15 0.33 -1.69 16 2 C -0.11 -1.74 3.51 -88.47 -0.31 -2.05 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.94 6.34 -2.53 -0.02 1.92 16 5 N -0.60 -10.39 3.33 -171.75 -0.57 -10.96 16 6 C 0.57 10.43 7.14 -12.47 -0.09 10.34 16 7 O -0.53 -11.50 16.75 -5.68 -0.10 -11.60 16 8 C -0.15 -2.27 5.43 -104.84 -0.57 -2.84 16 9 C -0.07 -0.99 8.52 -39.19 -0.33 -1.33 16 10 C -0.13 -1.51 10.02 -39.63 -0.40 -1.91 16 11 C -0.09 -0.89 10.03 -39.54 -0.40 -1.29 16 12 C -0.16 -1.71 9.98 -39.47 -0.39 -2.11 16 13 C 0.15 2.07 6.69 -38.69 -0.26 1.81 16 14 O -0.48 -6.54 12.49 -29.61 -0.37 -6.91 16 15 C 0.07 1.15 5.37 -3.07 -0.02 1.13 16 16 C 0.17 3.06 3.37 -66.10 -0.22 2.84 16 17 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 18 N -0.71 -16.11 4.61 -51.65 -0.24 -16.35 16 19 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 20 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 23 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16 30 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 31 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 32 H 0.14 2.11 5.89 -52.49 -0.31 1.80 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.39 3.38 9.06 45.56 0.41 3.79 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.46 5.87 -51.93 -0.30 1.15 16 39 H 0.39 9.49 6.10 -40.82 -0.25 9.24 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -32.15 332.21 -8.03 -40.18 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -4.54 Total: 12.27 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.92 Total: -1.91 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.09 Total: -53.25 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.47 Total: -18.50 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.15 -8.03 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054404379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.265 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds