Wall clock time and date at job start Tue Mar 31 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 110.91837 * 2 1 4 4 C 1.54914 * 111.00543 * 236.09647 * 2 1 3 5 5 N 1.47422 * 104.83103 * 204.91797 * 4 2 1 6 6 C 1.34780 * 125.64698 * 204.16234 * 5 4 2 7 7 O 1.21589 * 119.99677 * 355.14734 * 6 5 4 8 8 C 1.47529 * 119.99850 * 175.14363 * 6 5 4 9 9 C 1.39708 * 120.19237 * 46.98703 * 8 6 5 10 10 C 1.37795 * 119.90339 * 179.71816 * 9 8 6 11 11 C 1.38536 * 120.30224 * 0.58104 * 10 9 8 12 12 C 1.38063 * 120.39332 * 359.69229 * 11 10 9 13 13 C 1.38705 * 120.08157 * 0.02562 * 12 11 10 14 14 O 1.35648 * 120.14815 * 180.02562 * 13 12 11 15 15 C 1.47016 * 108.70794 * 24.12846 * 5 4 2 16 16 C 1.54327 * 107.27032 * 358.94115 * 15 5 4 17 17 H 1.09002 * 110.72246 * 219.26993 * 16 15 5 18 18 N 1.46493 * 110.72302 * 96.16921 * 16 15 5 19 19 C 1.36943 * 119.99973 * 86.45580 * 18 16 15 20 20 H 1.08005 * 119.99935 * 359.97438 * 19 18 16 21 21 C 1.38803 * 120.00017 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00272 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99976 * 180.27346 * 21 19 18 24 24 H 1.48497 * 109.46938 * 179.72373 * 23 21 19 25 25 H 1.48499 * 109.46862 * 299.72472 * 23 21 19 26 26 H 1.48505 * 109.46789 * 59.72324 * 23 21 19 27 27 H 1.09009 * 109.47360 * 296.09939 * 1 2 3 28 28 H 1.08994 * 109.47265 * 56.09771 * 1 2 3 29 29 H 1.08998 * 109.47536 * 176.09844 * 1 2 3 30 30 H 1.09001 * 110.36261 * 86.08061 * 4 2 1 31 31 H 1.08997 * 110.45598 * 323.80017 * 4 2 1 32 32 H 1.07996 * 120.04284 * 0.02562 * 9 8 6 33 33 H 1.08001 * 119.84212 * 180.27404 * 10 9 8 34 34 H 1.08003 * 119.80482 * 179.71629 * 11 10 9 35 35 H 1.07998 * 119.95941 * 180.02562 * 12 11 10 36 36 H 0.96703 * 114.00425 * 269.97510 * 14 13 12 37 37 H 1.09000 * 109.88729 * 239.52334 * 15 5 4 38 38 H 1.09001 * 110.01484 * 118.42768 * 15 5 4 39 39 H 0.96997 * 120.00149 * 266.45975 * 18 16 15 40 40 H 0.97003 * 120.00343 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2431 -0.7733 6 6 4.4480 -1.5604 -1.5939 7 8 4.2761 -1.5832 -2.7974 8 6 5.7742 -1.8799 -1.0320 9 6 5.8868 -2.7634 0.0444 10 6 7.1289 -3.0621 0.5609 11 6 8.2668 -2.4809 0.0254 12 6 8.1693 -1.6018 -1.0347 13 6 6.9277 -1.2942 -1.5709 14 8 6.8304 -0.4310 -2.6128 15 6 3.4674 -1.2742 0.6960 16 6 2.0861 -0.8079 1.2023 17 1 2.1919 -0.1724 2.0815 18 7 1.2267 -1.9574 1.4962 19 6 1.2814 -2.5562 2.7265 20 1 1.9584 -2.1814 3.4800 21 6 0.4676 -3.6456 3.0049 22 7 -0.3571 -4.1028 2.0866 23 14 0.5367 -4.4578 4.6858 24 1 -0.4276 -5.5862 4.7303 25 1 1.9088 -4.9692 4.9323 26 1 0.1837 -3.4635 5.7308 27 1 -0.3634 0.4521 0.9229 28 1 -0.3633 0.5732 -0.8529 29 1 -0.3634 -1.0252 -0.0699 30 1 2.1560 -0.1720 -2.0836 31 1 1.4524 -1.6704 -1.4042 32 1 5.0020 -3.2153 0.4678 33 1 7.2152 -3.7486 1.3901 34 1 9.2359 -2.7173 0.4394 35 1 9.0610 -1.1532 -1.4470 36 1 6.7246 0.4934 -2.3493 37 1 4.2425 -0.5998 1.0600 38 1 3.6661 -2.2884 1.0424 39 1 0.6190 -2.2943 0.8194 40 1 -0.9261 -4.8639 2.2813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054404379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:46 Heat of formation + Delta-G solvation = -50.863660 kcal Electronic energy + Delta-G solvation = -23432.361453 eV Core-core repulsion = 20018.885446 eV Total energy + Delta-G solvation = -3413.476007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.65804 -40.20171 -38.77506 -37.69286 -35.69990 -34.07548 -32.47995 -31.89049 -30.81526 -29.34460 -27.56593 -25.83886 -24.79994 -23.50266 -23.14717 -20.84346 -20.71875 -19.47844 -19.18390 -18.20844 -17.44742 -17.10712 -16.69441 -16.49074 -16.14770 -15.81741 -15.50419 -15.20754 -14.89081 -14.62815 -14.40810 -14.18037 -13.59048 -13.36988 -13.31188 -13.21251 -13.03882 -12.85689 -12.75914 -12.57820 -12.33700 -12.17348 -11.99494 -11.73253 -11.46357 -11.36359 -11.05573 -10.85949 -10.05551 -9.75247 -9.60839 -9.00717 -7.90707 -5.19427 -0.10645 0.25521 1.51222 1.52710 1.58730 1.62276 1.96610 2.58926 2.63517 3.17355 3.36160 3.40610 3.72169 3.83701 3.88549 3.95909 4.06741 4.10912 4.32148 4.41355 4.43045 4.57799 4.61601 4.69203 4.71609 4.84261 4.90172 4.95337 5.01981 5.17689 5.21936 5.29630 5.30140 5.34651 5.45037 5.54332 5.59646 5.79426 6.30022 6.46706 6.74389 7.03708 7.37866 8.11697 8.34895 9.32394 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.005104 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.062997 B = 5484.537354 C = 6762.630754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 H 0.112 0.888 4 C 0.114 3.886 5 N -0.602 5.602 6 C 0.566 3.434 7 O -0.577 6.577 8 C -0.176 4.176 9 C -0.084 4.084 10 C -0.132 4.132 11 C -0.071 4.071 12 C -0.149 4.149 13 C 0.140 3.860 14 O -0.501 6.501 15 C 0.082 3.918 16 C 0.162 3.838 17 H 0.084 0.916 18 N -0.723 5.723 19 C -0.236 4.236 20 H 0.084 0.916 21 C -0.072 4.072 22 N -0.970 5.970 23 Si 0.967 3.033 24 H -0.304 1.304 25 H -0.278 1.278 26 H -0.277 1.277 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.121 0.879 33 H 0.153 0.847 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.406 0.594 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.375 0.625 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.235 9.820 -1.582 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.116 4.116 3 H 0.130 0.870 4 C -0.009 4.009 5 N -0.334 5.334 6 C 0.357 3.643 7 O -0.458 6.458 8 C -0.179 4.179 9 C -0.103 4.103 10 C -0.150 4.150 11 C -0.089 4.089 12 C -0.167 4.167 13 C 0.094 3.906 14 O -0.314 6.314 15 C -0.043 4.043 16 C 0.052 3.948 17 H 0.102 0.898 18 N -0.363 5.363 19 C -0.367 4.367 20 H 0.102 0.898 21 C -0.264 4.264 22 N -0.621 5.621 23 Si 0.797 3.203 24 H -0.231 1.231 25 H -0.204 1.204 26 H -0.203 1.203 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.171 0.829 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.265 0.735 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.208 0.792 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.273 9.265 -2.401 18.879 hybrid contribution -0.925 -0.703 0.614 1.314 sum 15.348 8.562 -1.787 17.665 Atomic orbital electron populations 1.21471 0.93360 1.01338 1.02104 1.22576 0.96808 0.99287 0.92963 0.87018 1.22275 0.82465 0.97743 0.98381 1.48458 1.11727 1.65187 1.08039 1.18269 0.84314 0.76529 0.85231 1.90747 1.84508 1.54520 1.16056 1.20269 0.92473 1.05172 1.00034 1.21447 0.99718 0.95843 0.93247 1.21447 0.91291 1.00911 1.01326 1.21637 1.00019 0.93349 0.93912 1.21673 0.96491 1.01136 0.97447 1.18656 0.91406 0.93399 0.87110 1.84768 1.95281 1.21310 1.30049 1.23215 1.01232 1.01742 0.78154 1.21491 0.88199 0.88836 0.96273 0.89800 1.42617 1.46009 1.33997 1.13662 1.19604 1.17160 1.08514 0.91468 0.89846 1.25479 0.99619 1.00299 1.01004 1.69815 1.28828 1.28214 1.35202 0.85303 0.77008 0.77630 0.80346 1.23077 1.20372 1.20293 0.92145 0.91021 0.94451 0.90459 0.93797 0.86126 0.82892 0.81304 0.82203 0.73464 0.90028 0.92141 0.79171 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.85 71.98 0.64 -3.14 16 2 C -0.10 -2.85 3.51 -9.40 -0.03 -2.88 16 3 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 4 C 0.11 3.84 6.34 86.86 0.55 4.39 16 5 N -0.60 -20.94 3.33 -815.55 -2.71 -23.66 16 6 C 0.57 21.15 7.14 86.69 0.62 21.77 16 7 O -0.58 -25.71 16.75 6.49 0.11 -25.60 16 8 C -0.18 -5.44 5.43 -20.01 -0.11 -5.55 16 9 C -0.08 -2.32 8.52 22.52 0.19 -2.12 16 10 C -0.13 -2.65 10.02 22.24 0.22 -2.42 16 11 C -0.07 -1.13 10.03 22.30 0.22 -0.90 16 12 C -0.15 -2.76 9.98 22.34 0.22 -2.54 16 13 C 0.14 3.65 6.69 22.84 0.15 3.81 16 14 O -0.50 -13.04 12.49 -79.15 -0.99 -14.03 16 15 C 0.08 2.66 5.37 86.73 0.47 3.13 16 16 C 0.16 5.64 3.37 46.18 0.16 5.79 16 17 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 18 N -0.72 -33.11 4.61 -317.33 -1.46 -34.58 16 19 C -0.24 -11.97 9.98 84.03 0.84 -11.13 16 20 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 22 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 23 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.38 6.38 -2.39 -0.02 1.36 16 30 H 0.08 2.47 8.09 -2.39 -0.02 2.45 16 31 H 0.04 1.70 7.99 -2.39 -0.02 1.69 16 32 H 0.12 3.73 5.89 -2.91 -0.02 3.71 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.41 6.60 9.06 -74.06 -0.67 5.93 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.24 5.87 -2.39 -0.01 2.22 16 39 H 0.37 19.09 6.10 -92.71 -0.57 18.52 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -72.12 332.21 1.70 -70.42 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.16 Total: 33.96 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 4.60 Total: 4.75 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -3.89 Total: -115.57 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.88 Total: -39.63 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.12 1.70 -70.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054404379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.556 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds