Wall clock time and date at job start Tue Mar 31 2020 06:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.00183 * 2 1 4 4 C 1.54336 * 109.78052 * 121.16818 * 2 1 3 5 5 H 1.08997 * 110.66390 * 215.87677 * 4 2 1 6 6 N 1.46496 * 110.84968 * 339.02671 * 4 2 1 7 7 C 1.36938 * 119.99978 * 200.14657 * 6 4 2 8 8 H 1.07998 * 120.00011 * 359.97438 * 7 6 4 9 9 C 1.38809 * 119.99976 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00140 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00056 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46960 * 120.00146 * 11 9 7 14 14 H 1.48507 * 109.46795 * 240.00072 * 11 9 7 15 15 C 1.55155 * 103.01904 * 97.49703 * 4 2 1 16 16 C 1.54912 * 101.58579 * 35.30662 * 15 4 2 17 17 N 1.47025 * 109.88004 * 238.90868 * 2 1 3 18 18 C 1.34773 * 125.64903 * 59.55706 * 17 2 1 19 19 O 1.21772 * 120.00047 * 359.72287 * 18 17 2 20 20 C 1.41557 * 119.99695 * 179.71568 * 18 17 2 21 21 C 1.35629 * 119.99858 * 186.48000 * 20 18 17 22 22 C 1.41613 * 119.99581 * 10.02442 * 21 20 18 23 23 C 1.37946 * 126.09718 * 218.39255 * 22 21 20 24 24 C 1.40322 * 106.52595 * 179.91175 * 23 22 21 25 25 C 1.35156 * 107.20333 * 0.35820 * 24 23 22 26 26 O 1.34024 * 109.03592 * 359.77635 * 25 24 23 27 27 H 1.08999 * 109.47505 * 179.63846 * 1 2 3 28 28 H 1.09002 * 109.47286 * 299.63796 * 1 2 3 29 29 H 1.08997 * 109.47292 * 59.63848 * 1 2 3 30 30 H 0.96998 * 119.99548 * 20.14750 * 6 4 2 31 31 H 0.96997 * 120.00594 * 179.97438 * 10 9 7 32 32 H 1.09006 * 111.00406 * 277.22824 * 15 4 2 33 33 H 1.09007 * 111.00416 * 153.38630 * 15 4 2 34 34 H 1.08995 * 110.36309 * 204.15285 * 16 15 4 35 35 H 1.08999 * 110.45565 * 81.87732 * 16 15 4 36 36 H 1.07996 * 120.00281 * 6.48419 * 20 18 17 37 37 H 1.07999 * 119.99692 * 189.74923 * 21 20 18 38 38 H 1.08000 * 126.73858 * 0.02833 * 23 22 21 39 39 H 1.08001 * 126.39877 * 180.15282 * 24 23 22 40 40 H 1.07993 * 125.48184 * 179.77679 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9600 -0.2828 1.6224 6 7 1.0258 -0.8102 2.2862 7 6 1.3839 -1.0489 3.5862 8 1 2.4230 -1.1944 3.8421 9 6 0.4114 -1.1038 4.5752 10 7 -0.8551 -0.9270 4.2633 11 14 0.8999 -1.4287 6.3486 12 1 2.3735 -1.5920 6.4342 13 1 0.4782 -0.2843 7.1958 14 1 0.2364 -2.6687 6.8256 15 6 2.3561 -2.1697 0.6913 16 6 2.8612 -1.8465 -0.7371 17 7 2.0299 -0.7140 -1.1840 18 6 1.7752 -0.3843 -2.4657 19 8 1.0717 0.5768 -2.7190 20 6 2.3255 -1.1554 -3.5176 21 6 2.1796 -0.7501 -4.8037 22 6 1.6683 0.5401 -5.0857 23 6 0.8056 0.8660 -6.1115 24 6 0.5667 2.2449 -6.0092 25 6 1.2820 2.6975 -4.9555 26 8 1.9429 1.6710 -4.4026 27 1 -0.3634 -1.0276 -0.0065 28 1 -0.3634 0.5082 0.8932 29 1 -0.3634 0.5194 -0.8867 30 1 0.0925 -0.6799 2.0563 31 1 -1.5348 -0.9657 4.9542 32 1 1.4521 -2.7779 0.6578 33 1 3.1328 -2.6593 1.2790 34 1 2.7177 -2.7048 -1.3934 35 1 3.9125 -1.5595 -0.7135 36 1 2.8615 -2.0664 -3.2961 37 1 2.4576 -1.4096 -5.6125 38 1 0.3932 0.1918 -6.8476 39 1 -0.0674 2.8351 -6.6542 40 1 1.3156 3.7215 -4.6141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074502223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:59 Heat of formation + Delta-G solvation = 34.218127 kcal Electronic energy + Delta-G solvation = -23153.221618 eV Core-core repulsion = 19743.435034 eV Total energy + Delta-G solvation = -3409.786584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35004 -40.04057 -37.65380 -34.16297 -34.07542 -32.79252 -31.68377 -30.65174 -29.38168 -28.24085 -25.19590 -24.54102 -23.19657 -22.27093 -21.60786 -20.65749 -19.14097 -18.57522 -17.74480 -17.31197 -16.57037 -15.88106 -15.56461 -15.23220 -14.64488 -14.33250 -14.06235 -13.71778 -13.56052 -13.16466 -12.97880 -12.80602 -12.55108 -12.39133 -12.21524 -11.99022 -11.75557 -11.47392 -11.19013 -10.97602 -10.82911 -10.44940 -10.19219 -10.11908 -9.95511 -9.80728 -9.70361 -9.48982 -8.95032 -8.32598 -7.92534 -7.01770 -5.81529 -3.11272 0.55061 2.16588 2.70301 3.20770 3.34681 3.40805 3.46727 3.48810 3.56956 4.55342 4.66769 4.76817 5.00568 5.04106 5.08045 5.21408 5.27117 5.42180 5.55058 5.61576 5.64794 5.69227 5.72614 5.85599 5.95206 5.96222 6.10558 6.14263 6.24635 6.25830 6.36070 6.54005 6.58071 6.60897 6.77035 6.88300 7.02414 7.24353 7.66834 7.84889 8.36893 8.45664 9.48670 10.04302 10.39324 11.41067 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034756 B = 0.003398 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.433688 B = 8239.190766 C = 8717.891665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 H 0.070 0.930 4 C 0.173 3.827 5 H 0.062 0.938 6 N -0.718 5.718 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.153 4.153 16 C 0.097 3.903 17 N -0.604 5.604 18 C 0.550 3.450 19 O -0.529 6.529 20 C -0.193 4.193 21 C -0.007 4.007 22 C 0.013 3.987 23 C -0.186 4.186 24 C -0.228 4.228 25 C -0.017 4.017 26 O -0.132 6.132 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.391 0.609 31 H 0.256 0.744 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 0.540 -20.144 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 H 0.088 0.912 4 C 0.061 3.939 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.195 4.195 16 C -0.026 4.026 17 N -0.338 5.338 18 C 0.341 3.659 19 O -0.408 6.408 20 C -0.214 4.214 21 C -0.027 4.027 22 C -0.037 4.037 23 C -0.205 4.205 24 C -0.247 4.247 25 C -0.088 4.088 26 O -0.025 6.025 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 7.367 1.060 -19.877 21.225 hybrid contribution -0.266 -0.323 0.869 0.964 sum 7.101 0.737 -19.008 20.304 Atomic orbital electron populations 1.21980 0.94619 1.02315 1.02557 1.21777 0.95340 0.95668 0.84546 0.91197 1.21180 0.93160 0.92070 0.87493 0.92031 1.42684 1.05165 1.85277 1.03020 1.19287 0.93026 1.41065 0.84038 0.91017 1.24759 0.95297 1.02560 0.98151 1.69669 0.99291 1.56450 1.32479 0.86107 0.77510 0.77424 0.85049 1.20513 1.21834 1.21868 1.23546 1.01636 1.01299 0.92985 1.22390 0.94470 0.88550 0.97192 1.48545 1.49640 1.30476 1.05133 1.16724 0.82253 0.84919 0.81986 1.90844 1.38842 1.28326 1.82794 1.22375 1.03104 1.02616 0.93301 1.20590 0.94235 0.91037 0.96870 1.19563 1.03424 0.87359 0.93370 1.22113 1.02141 0.96024 1.00272 1.21598 1.05809 0.95391 1.01895 1.24132 0.96511 0.92708 0.95404 1.84289 1.55735 1.15243 1.47191 0.92643 0.90406 0.92154 0.77100 0.93434 0.90690 0.90630 0.91379 0.91696 0.84623 0.82905 0.83586 0.83767 0.78665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 7.93 37.15 0.29 -2.77 16 2 C 0.13 2.39 3.49 -66.95 -0.23 2.16 16 3 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.17 3.37 3.45 -66.09 -0.23 3.14 16 5 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 6 N -0.72 -17.55 5.02 -51.65 -0.26 -17.81 16 7 C -0.24 -6.56 9.98 -15.06 -0.15 -6.71 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 11 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C -0.15 -2.52 6.77 -24.58 -0.17 -2.69 16 16 C 0.10 1.29 6.53 -2.53 -0.02 1.27 16 17 N -0.60 -9.64 3.08 -166.41 -0.51 -10.15 16 18 C 0.55 8.85 7.17 -15.00 -0.11 8.74 16 19 O -0.53 -10.04 11.33 -19.69 -0.22 -10.27 16 20 C -0.19 -2.31 9.36 -39.25 -0.37 -2.67 16 21 C -0.01 -0.08 9.95 -39.23 -0.39 -0.47 16 22 C 0.01 0.18 5.34 -38.40 -0.21 -0.03 16 23 C -0.19 -2.21 10.90 -38.90 -0.42 -2.64 16 24 C -0.23 -2.63 10.87 -39.89 -0.43 -3.06 16 25 C -0.02 -0.21 12.06 29.64 0.36 0.15 16 26 O -0.13 -1.99 7.80 -20.14 -0.16 -2.15 16 27 H 0.05 1.11 8.05 -51.93 -0.42 0.69 16 28 H 0.08 1.65 6.73 -51.93 -0.35 1.30 16 29 H 0.06 1.19 6.73 -51.93 -0.35 0.84 16 30 H 0.39 10.14 4.94 -40.82 -0.20 9.94 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.74 7.04 -51.93 -0.37 0.37 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.14 1.20 6.69 -52.49 -0.35 0.85 16 37 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -33.13 329.71 -8.03 -41.17 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.39 Total: 10.28 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.17 Total: -6.00 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.05 Total: -54.98 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.38 Total: -12.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.13 -8.03 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074502223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.384 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds