Wall clock time and date at job start Tue Mar 31 2020 06:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.00183 * 2 1 4 4 C 1.54336 * 109.78052 * 121.16818 * 2 1 3 5 5 H 1.08997 * 110.66390 * 215.87677 * 4 2 1 6 6 N 1.46496 * 110.84968 * 339.02671 * 4 2 1 7 7 C 1.36938 * 119.99978 * 200.14657 * 6 4 2 8 8 H 1.07998 * 120.00011 * 359.97438 * 7 6 4 9 9 C 1.38809 * 119.99976 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00140 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00056 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46960 * 120.00146 * 11 9 7 14 14 H 1.48507 * 109.46795 * 240.00072 * 11 9 7 15 15 C 1.55155 * 103.01904 * 97.49703 * 4 2 1 16 16 C 1.54912 * 101.58579 * 35.30662 * 15 4 2 17 17 N 1.47025 * 109.88004 * 238.90868 * 2 1 3 18 18 C 1.34773 * 125.64903 * 59.55706 * 17 2 1 19 19 O 1.21772 * 120.00047 * 359.72287 * 18 17 2 20 20 C 1.41557 * 119.99695 * 179.71568 * 18 17 2 21 21 C 1.35629 * 119.99858 * 186.48000 * 20 18 17 22 22 C 1.41613 * 119.99581 * 10.02442 * 21 20 18 23 23 C 1.37946 * 126.09718 * 218.39255 * 22 21 20 24 24 C 1.40322 * 106.52595 * 179.91175 * 23 22 21 25 25 C 1.35156 * 107.20333 * 0.35820 * 24 23 22 26 26 O 1.34024 * 109.03592 * 359.77635 * 25 24 23 27 27 H 1.08999 * 109.47505 * 179.63846 * 1 2 3 28 28 H 1.09002 * 109.47286 * 299.63796 * 1 2 3 29 29 H 1.08997 * 109.47292 * 59.63848 * 1 2 3 30 30 H 0.96998 * 119.99548 * 20.14750 * 6 4 2 31 31 H 0.96997 * 120.00594 * 179.97438 * 10 9 7 32 32 H 1.09006 * 111.00406 * 277.22824 * 15 4 2 33 33 H 1.09007 * 111.00416 * 153.38630 * 15 4 2 34 34 H 1.08995 * 110.36309 * 204.15285 * 16 15 4 35 35 H 1.08999 * 110.45565 * 81.87732 * 16 15 4 36 36 H 1.07996 * 120.00281 * 6.48419 * 20 18 17 37 37 H 1.07999 * 119.99692 * 189.74923 * 21 20 18 38 38 H 1.08000 * 126.73858 * 0.02833 * 23 22 21 39 39 H 1.08001 * 126.39877 * 180.15282 * 24 23 22 40 40 H 1.07993 * 125.48184 * 179.77679 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9600 -0.2828 1.6224 6 7 1.0258 -0.8102 2.2862 7 6 1.3839 -1.0489 3.5862 8 1 2.4230 -1.1944 3.8421 9 6 0.4114 -1.1038 4.5752 10 7 -0.8551 -0.9270 4.2633 11 14 0.8999 -1.4287 6.3486 12 1 2.3735 -1.5920 6.4342 13 1 0.4782 -0.2843 7.1958 14 1 0.2364 -2.6687 6.8256 15 6 2.3561 -2.1697 0.6913 16 6 2.8612 -1.8465 -0.7371 17 7 2.0299 -0.7140 -1.1840 18 6 1.7752 -0.3843 -2.4657 19 8 1.0717 0.5768 -2.7190 20 6 2.3255 -1.1554 -3.5176 21 6 2.1796 -0.7501 -4.8037 22 6 1.6683 0.5401 -5.0857 23 6 0.8056 0.8660 -6.1115 24 6 0.5667 2.2449 -6.0092 25 6 1.2820 2.6975 -4.9555 26 8 1.9429 1.6710 -4.4026 27 1 -0.3634 -1.0276 -0.0065 28 1 -0.3634 0.5082 0.8932 29 1 -0.3634 0.5194 -0.8867 30 1 0.0925 -0.6799 2.0563 31 1 -1.5348 -0.9657 4.9542 32 1 1.4521 -2.7779 0.6578 33 1 3.1328 -2.6593 1.2790 34 1 2.7177 -2.7048 -1.3934 35 1 3.9125 -1.5595 -0.7135 36 1 2.8615 -2.0664 -3.2961 37 1 2.4576 -1.4096 -5.6125 38 1 0.3932 0.1918 -6.8476 39 1 -0.0674 2.8351 -6.6542 40 1 1.3156 3.7215 -4.6141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074502223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:59 Heat of formation + Delta-G solvation = 14.086604 kcal Electronic energy + Delta-G solvation = -23154.094586 eV Core-core repulsion = 19743.435034 eV Total energy + Delta-G solvation = -3410.659552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.27784 -41.30705 -39.01194 -35.92022 -35.02502 -33.73375 -33.42486 -32.08191 -30.91016 -29.37517 -26.79492 -25.89819 -24.82303 -23.42658 -22.52117 -21.73318 -20.53667 -19.68639 -19.44354 -18.70247 -17.59370 -17.05919 -16.85352 -16.51343 -16.22213 -15.84504 -15.38284 -15.03404 -14.85104 -14.47947 -14.28122 -13.84588 -13.67742 -13.62720 -13.36912 -13.24065 -13.10633 -12.97808 -12.90651 -12.85626 -12.52976 -12.06504 -12.01073 -11.60957 -11.52060 -11.03500 -10.92657 -10.83900 -10.63824 -9.59099 -9.01753 -8.85236 -7.94072 -5.23414 -0.34262 1.23712 1.49082 1.49739 1.59742 1.79957 2.09109 2.34770 2.55674 2.58009 3.37392 3.61259 3.79436 3.87887 3.94401 4.06666 4.18050 4.19610 4.23315 4.36732 4.41233 4.50958 4.58308 4.65771 4.77633 4.82609 4.88239 4.90228 5.05550 5.09719 5.13131 5.19790 5.25729 5.33936 5.43632 5.54460 5.55337 5.72152 6.27652 6.33551 6.66092 7.26648 7.34635 8.08221 8.32090 9.29967 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034756 B = 0.003398 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.433688 B = 8239.190766 C = 8717.891665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.138 3.862 3 H 0.058 0.942 4 C 0.164 3.836 5 H 0.064 0.936 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.262 1.262 13 H -0.297 1.297 14 H -0.295 1.295 15 C -0.144 4.144 16 C 0.105 3.895 17 N -0.608 5.608 18 C 0.540 3.460 19 O -0.568 6.568 20 C -0.212 4.212 21 C 0.012 3.988 22 C -0.019 4.019 23 C -0.189 4.189 24 C -0.234 4.234 25 C -0.038 4.038 26 O -0.162 6.162 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.380 0.620 31 H 0.250 0.750 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.173 0.827 37 H 0.202 0.798 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.539 -0.934 -21.953 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.033 3.967 3 H 0.076 0.924 4 C 0.055 3.945 5 H 0.082 0.918 6 N -0.376 5.376 7 C -0.369 4.369 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.186 1.186 13 H -0.225 1.225 14 H -0.223 1.223 15 C -0.185 4.185 16 C -0.017 4.017 17 N -0.341 5.341 18 C 0.335 3.665 19 O -0.450 6.450 20 C -0.232 4.232 21 C -0.008 4.008 22 C -0.068 4.068 23 C -0.208 4.208 24 C -0.253 4.253 25 C -0.108 4.108 26 O -0.056 6.056 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.216 0.784 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.190 0.810 37 H 0.218 0.782 38 H 0.190 0.810 39 H 0.185 0.815 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.477 -0.438 -21.724 23.705 hybrid contribution -0.907 0.239 1.285 1.591 sum 8.570 -0.200 -20.439 22.164 Atomic orbital electron populations 1.21766 0.95964 1.01101 1.00913 1.21468 0.94080 0.95462 0.85690 0.92379 1.21387 0.91916 0.94437 0.86810 0.91777 1.42866 1.05697 1.85546 1.03530 1.19699 0.93330 1.38778 0.85102 0.90023 1.25574 0.95359 1.03780 1.02189 1.69835 1.00330 1.58805 1.33316 0.85059 0.77973 0.76517 0.80106 1.18624 1.22491 1.22258 1.23349 1.01367 0.98420 0.95354 1.22534 0.95034 0.88811 0.95320 1.48588 1.50062 1.30987 1.04487 1.17505 0.81758 0.84765 0.82521 1.90829 1.40673 1.30201 1.83306 1.22433 1.04897 1.03744 0.92156 1.21234 0.91508 0.90178 0.97862 1.20273 1.04603 0.88106 0.93854 1.22555 1.01440 0.96558 1.00245 1.22000 1.05665 0.95812 1.01833 1.24740 0.96698 0.93436 0.95900 1.84259 1.56674 1.16329 1.48321 0.93548 0.92783 0.92806 0.78435 0.94110 0.92632 0.89295 0.87830 0.89099 0.80989 0.78171 0.81002 0.81492 0.76688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 7.93 71.98 0.57 -5.13 16 2 C 0.14 5.12 3.49 45.34 0.16 5.28 16 3 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.16 6.37 3.45 46.18 0.16 6.53 16 5 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 6 N -0.73 -36.56 5.02 -317.33 -1.59 -38.16 16 7 C -0.24 -12.86 9.98 84.03 0.84 -12.02 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 10 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 11 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 12 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 14 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 15 C -0.14 -4.48 6.77 31.99 0.22 -4.27 16 16 C 0.10 2.43 6.53 86.86 0.57 2.99 16 17 N -0.61 -18.55 3.08 -798.58 -2.46 -21.01 16 18 C 0.54 16.71 7.17 85.06 0.61 17.32 16 19 O -0.57 -21.73 11.33 19.15 0.22 -21.51 16 20 C -0.21 -4.38 9.36 22.48 0.21 -4.17 16 21 C 0.01 0.21 9.95 22.50 0.22 0.43 16 22 C -0.02 -0.46 5.34 23.03 0.12 -0.34 16 23 C -0.19 -4.12 10.90 22.71 0.25 -3.87 16 24 C -0.23 -5.12 10.87 22.07 0.24 -4.88 16 25 C -0.04 -0.94 12.06 67.11 0.81 -0.13 16 26 O -0.16 -4.87 7.80 17.55 0.14 -4.73 16 27 H 0.05 1.93 8.05 -2.39 -0.02 1.92 16 28 H 0.05 2.44 6.73 -2.39 -0.02 2.42 16 29 H 0.05 2.23 6.73 -2.39 -0.02 2.22 16 30 H 0.38 20.50 4.94 -92.71 -0.46 20.04 16 31 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.10 1.74 7.04 -2.39 -0.02 1.72 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.17 2.16 6.69 -2.91 -0.02 2.14 16 37 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.22 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -74.91 329.71 4.65 -70.27 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.59 Total: 32.98 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 5.44 Total: -6.16 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -3.77 Total: -118.54 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: 0.35 Total: -26.24 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -74.91 4.65 -70.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074502223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.355 kcal (2) G-P(sol) polarization free energy of solvation -74.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds