Wall clock time and date at job start Tue Mar 31 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99974 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00091 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47323 * 89.99961 * 9 7 5 11 11 H 1.48504 * 109.46935 * 209.99740 * 9 7 5 12 12 H 1.48493 * 109.47102 * 329.99583 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.48050 * 111.00110 * 285.00894 * 14 13 2 16 16 C 1.51181 * 105.67164 * 213.03526 * 15 14 13 17 17 C 1.38181 * 131.77802 * 197.52887 * 16 15 14 18 18 C 1.38221 * 120.03242 * 179.97438 * 17 16 15 19 19 C 1.38255 * 120.00145 * 0.02562 * 18 17 16 20 20 N 1.48018 * 119.99640 * 180.02562 * 19 18 17 21 21 O 1.21794 * 120.00513 * 0.02562 * 20 19 18 22 22 O 1.21804 * 119.99734 * 179.97438 * 20 19 18 23 23 C 1.38220 * 120.00272 * 0.04644 * 19 18 17 24 24 C 1.38185 * 120.02906 * 359.89431 * 23 19 18 25 25 C 1.48048 * 110.99998 * 169.99862 * 14 13 2 26 26 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 28 28 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 29 29 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 30 30 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 31 31 H 0.97003 * 120.00629 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 34 34 H 1.09000 * 110.20704 * 332.08000 * 15 14 13 35 35 H 1.08998 * 110.21332 * 93.98576 * 15 14 13 36 36 H 1.08010 * 119.98204 * 359.96889 * 17 16 15 37 37 H 1.07997 * 119.99664 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.98759 * 180.02562 * 23 19 18 39 39 H 1.09004 * 110.21207 * 266.01914 * 25 14 13 40 40 H 1.09003 * 110.20808 * 27.91344 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6457 0.2777 -4.7993 9 14 2.9638 -1.9882 -3.9027 10 1 2.0248 -3.1326 -4.0200 11 1 3.8128 -1.9178 -5.1191 12 1 3.8254 -2.1753 -2.7079 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.4917 1.2462 2.6036 16 6 2.6301 1.4553 4.0945 17 6 3.0136 2.5549 4.8382 18 6 3.0552 2.4768 6.2176 19 6 2.7136 1.2979 6.8538 20 7 2.7577 1.2145 8.3310 21 8 3.0944 2.1845 8.9860 22 8 2.4562 0.1760 8.8916 23 6 2.3313 0.1970 6.1106 24 6 2.2882 0.2747 4.7316 25 6 1.9145 -0.7417 3.6767 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.1264 -0.7993 -1.2056 30 1 1.6055 -1.7198 -1.2951 31 1 1.8930 -0.0451 -5.6800 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 3.4713 1.0851 2.1535 35 1 2.0033 2.1067 2.1465 36 1 3.2810 3.4759 4.3414 37 1 3.3546 3.3367 6.7983 38 1 2.0640 -0.7237 6.6079 39 1 1.0186 -1.2849 3.9772 40 1 2.7394 -1.4354 3.5141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119296364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:19 Heat of formation + Delta-G solvation = 26.135270 kcal Electronic energy + Delta-G solvation = -22171.690595 eV Core-core repulsion = 18761.553512 eV Total energy + Delta-G solvation = -3410.137083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.46006 -40.92168 -37.88461 -36.82196 -35.24052 -32.56927 -32.38140 -31.26127 -28.59603 -27.81416 -26.82048 -25.54006 -23.76492 -22.31397 -21.93009 -21.44432 -19.33481 -19.03064 -18.84260 -17.78955 -16.95560 -16.60173 -16.29778 -15.57635 -14.81449 -14.53742 -14.49135 -14.18899 -13.91069 -13.45515 -13.14263 -12.93598 -12.80259 -12.39166 -12.16973 -11.86142 -11.73585 -11.65360 -11.53973 -11.42450 -11.39938 -11.05988 -10.85223 -10.62375 -9.91623 -9.85726 -9.78070 -9.65870 -9.55356 -9.15820 -8.59076 -8.54480 -6.08997 -4.06653 -0.47982 0.52462 1.02922 1.10111 2.83843 3.25106 3.33218 3.34676 3.65873 3.68850 3.91181 4.10871 4.39628 4.47423 4.55434 4.67671 5.01226 5.04547 5.16221 5.21684 5.25066 5.31155 5.34932 5.37355 5.47716 5.59805 5.78123 5.83447 5.86722 6.08585 6.15607 6.17233 6.40030 6.59522 6.67963 6.83393 6.98193 7.06856 7.19898 7.35752 7.37161 7.74199 8.49246 8.96329 9.53433 11.04314 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040715 B = 0.002711 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.538645 B =10325.152524 C =10518.208619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 H 0.062 0.938 4 C -0.010 4.010 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.045 3.955 14 N -0.495 5.495 15 C 0.065 3.935 16 C -0.040 4.040 17 C -0.101 4.101 18 C -0.051 4.051 19 C -0.049 4.049 20 N 0.032 4.968 21 O -0.163 6.163 22 O -0.163 6.163 23 C -0.038 4.038 24 C -0.099 4.099 25 C 0.074 3.926 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.099 0.901 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 1.395 21.057 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.047 4.047 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.082 4.082 14 N -0.218 5.218 15 C -0.062 4.062 16 C -0.041 4.041 17 C -0.120 4.120 18 C -0.071 4.071 19 C -0.132 4.132 20 N 0.551 4.449 21 O -0.378 6.378 22 O -0.378 6.378 23 C -0.058 4.058 24 C -0.100 4.100 25 C -0.054 4.054 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.118 0.882 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.513 1.540 20.060 20.275 hybrid contribution 1.413 -1.087 0.225 1.797 sum 3.926 0.453 20.285 20.666 Atomic orbital electron populations 1.21615 0.95096 1.00747 1.00908 1.20984 0.96495 0.99131 0.92206 0.91943 1.19627 0.95697 0.95966 0.93454 1.21094 1.35473 1.09653 0.89015 0.90789 1.25030 0.95633 0.96912 0.95965 1.69905 1.47024 1.39274 0.98048 0.86812 0.80627 0.84379 0.77618 1.20324 1.21459 1.19197 1.22719 0.98177 0.97689 0.89643 1.65403 1.49933 1.04877 1.01602 1.21934 0.97938 0.96778 0.89566 1.21278 0.92094 0.93243 0.97453 1.20552 1.00609 0.99133 0.91707 1.20974 0.94987 0.96212 0.94879 1.20889 1.14507 0.98524 0.79273 1.43565 0.97625 1.00159 1.03552 1.94534 1.49811 1.28412 1.65070 1.94545 1.51265 1.19205 1.72817 1.20205 0.95161 0.97864 0.92545 1.20604 0.99798 0.97088 0.92545 1.21739 1.01656 0.94218 0.87767 0.94138 0.93658 0.92019 0.96957 0.96984 0.92750 0.94299 0.90429 0.90426 0.87556 0.83226 0.82657 0.82959 0.88247 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.89 37.16 0.33 -1.88 16 2 C -0.07 -1.22 2.39 -90.62 -0.22 -1.44 16 3 H 0.06 1.13 7.59 -51.92 -0.39 0.73 16 4 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 5 C -0.51 -13.87 8.96 -34.44 -0.31 -14.18 16 6 H 0.07 2.15 7.30 -52.49 -0.38 1.77 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 9 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 13 C 0.04 0.62 4.06 -3.83 -0.02 0.60 16 14 N -0.49 -5.86 4.89 -234.92 -1.15 -7.00 16 15 C 0.07 0.68 5.89 -4.11 -0.02 0.65 16 16 C -0.04 -0.37 6.26 -104.33 -0.65 -1.02 16 17 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 18 C -0.05 -0.43 9.56 -39.58 -0.38 -0.80 16 19 C -0.05 -0.49 6.85 -79.95 -0.55 -1.04 16 20 N 0.03 0.39 4.45 33.96 0.15 0.54 16 21 O -0.16 -2.03 18.45 -29.46 -0.54 -2.57 16 22 O -0.16 -2.07 18.45 -29.46 -0.54 -2.62 16 23 C -0.04 -0.36 9.55 -39.61 -0.38 -0.73 16 24 C -0.10 -0.94 6.26 -104.33 -0.65 -1.59 16 25 C 0.07 0.71 6.57 -4.11 -0.03 0.68 16 26 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 28 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 29 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 30 H 0.01 0.26 7.57 -51.92 -0.39 -0.13 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.04 0.52 7.68 -51.93 -0.40 0.12 16 33 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.08 0.79 7.52 -51.93 -0.39 0.40 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.16 1.02 7.61 -52.49 -0.40 0.62 16 38 H 0.15 1.23 7.61 -52.48 -0.40 0.83 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.61 7.81 -51.93 -0.41 0.21 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -30.46 334.18 -9.99 -40.45 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.58 Total: -3.31 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -3.47 Total: -20.48 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: -0.22 Total: -32.85 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -1.09 Total: -5.19 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.46 -9.99 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119296364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.581 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds