Wall clock time and date at job start Tue Mar 31 2020 06:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99974 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00091 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47323 * 89.99961 * 9 7 5 11 11 H 1.48504 * 109.46935 * 209.99740 * 9 7 5 12 12 H 1.48493 * 109.47102 * 329.99583 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.48050 * 111.00110 * 285.00894 * 14 13 2 16 16 C 1.51181 * 105.67164 * 213.03526 * 15 14 13 17 17 C 1.38181 * 131.77802 * 197.52887 * 16 15 14 18 18 C 1.38221 * 120.03242 * 179.97438 * 17 16 15 19 19 C 1.38255 * 120.00145 * 0.02562 * 18 17 16 20 20 N 1.48018 * 119.99640 * 180.02562 * 19 18 17 21 21 O 1.21794 * 120.00513 * 0.02562 * 20 19 18 22 22 O 1.21804 * 119.99734 * 179.97438 * 20 19 18 23 23 C 1.38220 * 120.00272 * 0.04644 * 19 18 17 24 24 C 1.38185 * 120.02906 * 359.89431 * 23 19 18 25 25 C 1.48048 * 110.99998 * 169.99862 * 14 13 2 26 26 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 28 28 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 29 29 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 30 30 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 31 31 H 0.97003 * 120.00629 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 34 34 H 1.09000 * 110.20704 * 332.08000 * 15 14 13 35 35 H 1.08998 * 110.21332 * 93.98576 * 15 14 13 36 36 H 1.08010 * 119.98204 * 359.96889 * 17 16 15 37 37 H 1.07997 * 119.99664 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.98759 * 180.02562 * 23 19 18 39 39 H 1.09004 * 110.21207 * 266.01914 * 25 14 13 40 40 H 1.09003 * 110.20808 * 27.91344 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6457 0.2777 -4.7993 9 14 2.9638 -1.9882 -3.9027 10 1 2.0248 -3.1326 -4.0200 11 1 3.8128 -1.9178 -5.1191 12 1 3.8254 -2.1753 -2.7079 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.4917 1.2462 2.6036 16 6 2.6301 1.4553 4.0945 17 6 3.0136 2.5549 4.8382 18 6 3.0552 2.4768 6.2176 19 6 2.7136 1.2979 6.8538 20 7 2.7577 1.2145 8.3310 21 8 3.0944 2.1845 8.9860 22 8 2.4562 0.1760 8.8916 23 6 2.3313 0.1970 6.1106 24 6 2.2882 0.2747 4.7316 25 6 1.9145 -0.7417 3.6767 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.1264 -0.7993 -1.2056 30 1 1.6055 -1.7198 -1.2951 31 1 1.8930 -0.0451 -5.6800 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 3.4713 1.0851 2.1535 35 1 2.0033 2.1067 2.1465 36 1 3.2810 3.4759 4.3414 37 1 3.3546 3.3367 6.7983 38 1 2.0640 -0.7237 6.6079 39 1 1.0186 -1.2849 3.9772 40 1 2.7394 -1.4354 3.5141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119296364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:18 Heat of formation + Delta-G solvation = 9.117295 kcal Electronic energy + Delta-G solvation = -22172.428550 eV Core-core repulsion = 18761.553512 eV Total energy + Delta-G solvation = -3410.875037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.31665 -41.68697 -38.82869 -37.72717 -36.61088 -34.38891 -33.11790 -32.35728 -29.59277 -29.26469 -27.89693 -26.55665 -25.04837 -23.41605 -22.72102 -22.46159 -20.60937 -19.95381 -19.75137 -18.91813 -18.65724 -17.46593 -17.08184 -16.51411 -16.22642 -15.57777 -15.39947 -15.35696 -15.08498 -14.58337 -14.30867 -14.05413 -13.90761 -13.64755 -13.40313 -12.95987 -12.82013 -12.77873 -12.73879 -12.43276 -12.36112 -12.34546 -12.24505 -12.20702 -11.71023 -11.41708 -11.18895 -11.05155 -10.72388 -10.54459 -10.35491 -9.39430 -8.24500 -6.26727 -1.30622 -0.12296 0.21423 0.30013 1.37602 1.38736 1.49762 2.15515 2.38644 2.79467 2.97429 3.11253 3.17563 3.46524 3.78267 3.86510 3.98162 4.09512 4.20147 4.36933 4.40834 4.48812 4.50636 4.59220 4.66498 4.71665 4.78063 4.82547 4.84976 4.96729 5.05399 5.11193 5.14425 5.39911 5.42148 5.43071 5.56289 5.60835 5.74440 5.81512 5.90432 6.36407 6.43637 6.81825 7.36930 8.92232 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040715 B = 0.002711 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.538645 B =10325.152524 C =10518.208619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.065 4.065 3 H 0.053 0.947 4 C -0.008 4.008 5 C -0.516 4.516 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.243 1.243 13 C 0.058 3.942 14 N -0.507 5.507 15 C 0.064 3.936 16 C -0.043 4.043 17 C -0.092 4.092 18 C -0.047 4.047 19 C -0.062 4.062 20 N 0.033 4.967 21 O -0.173 6.173 22 O -0.186 6.186 23 C -0.039 4.039 24 C -0.103 4.103 25 C 0.076 3.924 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.109 0.891 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 0.384 22.522 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.046 4.046 5 C -0.554 4.554 6 H 0.053 0.947 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.166 1.166 13 C -0.070 4.070 14 N -0.230 5.230 15 C -0.064 4.064 16 C -0.044 4.044 17 C -0.111 4.111 18 C -0.066 4.066 19 C -0.146 4.146 20 N 0.548 4.452 21 O -0.388 6.388 22 O -0.397 6.397 23 C -0.058 4.058 24 C -0.104 4.104 25 C -0.051 4.051 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.195 0.805 37 H 0.190 0.810 38 H 0.179 0.821 39 H 0.127 0.873 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.612 0.512 21.578 21.884 hybrid contribution 1.010 -0.638 -0.255 1.222 sum 4.622 -0.126 21.323 21.819 Atomic orbital electron populations 1.21515 0.95230 1.00769 1.00018 1.20828 0.96297 0.98678 0.92548 0.92833 1.19589 0.96028 0.95794 0.93196 1.21460 1.34085 1.08663 0.91224 0.94727 1.26008 0.97110 1.00899 0.95612 1.70074 1.49210 1.41677 0.98723 0.85709 0.79339 0.79583 0.78288 1.19504 1.21590 1.16635 1.22427 0.98452 0.97518 0.88577 1.65293 1.50522 1.05440 1.01753 1.21926 0.97866 0.96184 0.90386 1.21312 0.92413 0.93821 0.96858 1.20827 0.99331 0.99681 0.91276 1.21243 0.94003 0.96085 0.95231 1.21067 1.15887 0.99680 0.77941 1.43836 0.97119 0.99806 1.04407 1.94515 1.50027 1.28423 1.65816 1.94535 1.52180 1.19471 1.73535 1.20275 0.94912 0.98101 0.92512 1.20574 1.00170 0.97249 0.92448 1.21755 1.02617 0.94147 0.86618 0.93609 0.91744 0.95596 0.96334 0.96396 0.92783 0.93514 0.89543 0.90113 0.87830 0.80496 0.80981 0.82131 0.87329 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.89 71.98 0.64 -3.42 16 2 C -0.06 -2.19 2.39 -10.80 -0.03 -2.22 16 3 H 0.05 1.90 7.59 -2.38 -0.02 1.88 16 4 C -0.01 -0.35 3.52 29.85 0.10 -0.25 16 5 C -0.52 -28.31 8.96 25.60 0.23 -28.08 16 6 H 0.03 2.11 7.30 -2.91 -0.02 2.09 16 7 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 8 N -0.96 -59.07 13.96 21.45 0.30 -58.77 16 9 Si 0.95 42.81 27.47 68.60 1.88 44.70 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 13 C 0.06 1.44 4.06 86.30 0.35 1.79 16 14 N -0.51 -10.63 4.89 -897.15 -4.39 -15.02 16 15 C 0.06 1.17 5.89 85.49 0.50 1.67 16 16 C -0.04 -0.68 6.26 -19.68 -0.12 -0.80 16 17 C -0.09 -1.13 10.04 22.25 0.22 -0.91 16 18 C -0.05 -0.65 9.56 22.27 0.21 -0.44 16 19 C -0.06 -1.15 6.85 36.38 0.25 -0.90 16 20 N 0.03 0.77 4.45 -46.46 -0.21 0.56 16 21 O -0.17 -4.15 18.45 18.89 0.35 -3.80 16 22 O -0.19 -4.64 18.45 18.88 0.35 -4.29 16 23 C -0.04 -0.64 9.55 22.25 0.21 -0.43 16 24 C -0.10 -1.68 6.26 -19.68 -0.12 -1.81 16 25 C 0.08 1.23 6.57 85.49 0.56 1.79 16 26 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.06 1.94 7.75 -2.39 -0.02 1.92 16 28 H 0.02 1.04 6.95 -2.39 -0.02 1.02 16 29 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 30 H 0.02 0.75 7.57 -2.38 -0.02 0.73 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.05 1.10 7.68 -2.39 -0.02 1.08 16 33 H 0.09 2.01 8.08 -2.39 -0.02 1.99 16 34 H 0.08 1.45 7.52 -2.39 -0.02 1.43 16 35 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.17 1.79 7.61 -2.91 -0.02 1.77 16 38 H 0.16 2.32 7.61 -2.91 -0.02 2.30 16 39 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.08 1.15 7.81 -2.39 -0.02 1.14 16 Total: -1.00 -66.98 334.18 2.75 -64.24 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 0.98 Total: 5.95 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 3.48 Total: -33.57 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -4.30 Total: -73.23 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.70 Total: -8.09 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Total: -66.98 2.75 -64.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119296364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.352 kcal (2) G-P(sol) polarization free energy of solvation -66.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds