Wall clock time and date at job start Tue Mar 31 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00290 * 2 1 4 4 O 1.42896 * 109.47488 * 134.99823 * 3 2 1 5 5 C 1.35703 * 117.00248 * 179.97438 * 4 3 2 6 6 C 1.39001 * 119.91238 * 0.30191 * 5 4 3 7 7 C 1.37701 * 120.09036 * 180.25651 * 6 5 4 8 8 C 1.39740 * 119.91009 * 359.43945 * 7 6 5 9 9 C 1.47594 * 120.08984 * 180.30153 * 8 7 6 10 10 O 1.21587 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00311 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00361 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47163 * 179.97438 * 12 11 9 14 14 N 1.46498 * 109.46973 * 179.97438 * 13 12 11 15 15 C 1.36944 * 119.99946 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99629 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00133 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47075 * 59.99729 * 19 17 15 21 21 H 1.48498 * 109.47167 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46592 * 299.99931 * 19 17 15 23 23 C 1.39733 * 119.82362 * 0.28485 * 8 7 6 24 24 C 1.37709 * 119.90833 * 359.97438 * 23 8 7 25 25 H 1.07997 * 120.00372 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99807 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99807 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46861 * 14.99372 * 3 2 1 29 29 H 1.09005 * 109.46841 * 255.00330 * 3 2 1 30 30 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.04909 * 179.72495 * 7 6 5 32 32 H 0.97004 * 119.99698 * 359.97438 * 11 9 8 33 33 H 1.08999 * 109.46594 * 299.99752 * 12 11 9 34 34 H 1.08991 * 109.46752 * 59.99612 * 12 11 9 35 35 H 1.08997 * 109.47263 * 300.00438 * 13 12 11 36 36 H 1.09005 * 109.47165 * 59.99794 * 13 12 11 37 37 H 0.96994 * 120.00146 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00288 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.04691 * 180.02562 * 23 8 7 40 40 H 1.07999 * 119.95155 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6518 3.4674 0.3017 7 6 4.4461 4.5857 0.4221 8 6 5.5044 4.5938 1.3346 9 6 6.3542 5.7927 1.4717 10 8 6.1336 6.7753 0.7904 11 7 7.3747 5.7984 2.3519 12 6 8.2179 6.9887 2.4884 13 6 9.2929 6.7336 3.5467 14 7 10.1364 7.9236 3.6827 15 6 11.1728 7.9297 4.5778 16 1 11.3684 7.0570 5.1832 17 6 11.9717 9.0574 4.7070 18 7 11.7328 10.1211 3.9696 19 14 13.3858 9.0654 5.9276 20 1 14.3438 7.9848 5.5822 21 1 14.0787 10.3778 5.8738 22 1 12.8585 8.8404 7.2974 23 6 5.7558 3.4638 2.1173 24 6 4.9600 2.3475 1.9870 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4755 1.4867 -0.9927 30 1 2.8309 3.4620 -0.4002 31 1 4.2487 5.4571 -0.1846 32 1 7.5505 5.0146 2.8957 33 1 8.6934 7.2085 1.5325 34 1 7.6035 7.8362 2.7920 35 1 8.8171 6.5139 4.5024 36 1 9.9074 5.8858 3.2435 37 1 9.9604 8.7075 3.1392 38 1 12.2909 10.9094 4.0601 39 1 6.5725 3.4663 2.8240 40 1 5.1534 1.4739 2.5919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130371178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:33 Heat of formation + Delta-G solvation = -14.315422 kcal Electronic energy + Delta-G solvation = -21086.093098 eV Core-core repulsion = 17674.201942 eV Total energy + Delta-G solvation = -3411.891156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71282 -39.54857 -37.48395 -35.67710 -34.59643 -33.88431 -31.59577 -31.24253 -30.38096 -27.68007 -27.10327 -24.13743 -23.04575 -22.88232 -21.46234 -20.55964 -20.31358 -18.74189 -17.78161 -17.20262 -16.69617 -16.31024 -15.69509 -15.31596 -15.19032 -14.77836 -14.52247 -14.10316 -13.95396 -13.83607 -13.69062 -13.24364 -13.12068 -12.89362 -12.82592 -12.62397 -11.73352 -11.62910 -11.36182 -11.18097 -11.08135 -10.81424 -10.78939 -10.15433 -10.08961 -9.92675 -9.71087 -9.40719 -8.99675 -8.85632 -8.51676 -6.98695 -5.78575 -3.09435 0.68110 1.02329 1.48789 2.80428 2.84646 3.25789 3.43601 3.47964 3.49330 3.69522 4.20966 4.41907 4.44685 4.51996 4.58308 4.69622 4.73628 4.84795 4.95070 5.04781 5.21805 5.27978 5.51045 5.52291 5.67284 5.79169 5.84403 5.92770 5.95479 5.96888 6.01771 6.09181 6.17211 6.30302 6.49150 6.71265 6.75369 6.95082 7.62195 7.66239 8.31653 8.39059 9.50152 10.04946 10.39769 11.43856 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.050229 B = 0.002062 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.310408 B =13578.463894 C =14079.401254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.158 4.158 3 C 0.084 3.916 4 O -0.309 6.309 5 C 0.151 3.849 6 C -0.219 4.219 7 C -0.018 4.018 8 C -0.168 4.168 9 C 0.557 3.443 10 O -0.542 6.542 11 N -0.719 5.719 12 C 0.111 3.889 13 C 0.144 3.856 14 N -0.729 5.729 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C -0.045 4.045 24 C -0.158 4.158 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.398 0.602 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.136 0.864 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.997 -21.177 -8.114 31.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.010 3.990 4 O -0.222 6.222 5 C 0.105 3.895 6 C -0.238 4.238 7 C -0.037 4.037 8 C -0.172 4.172 9 C 0.345 3.655 10 O -0.420 6.420 11 N -0.370 5.370 12 C -0.013 4.013 13 C 0.016 3.984 14 N -0.374 5.374 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.064 4.064 24 C -0.177 4.177 25 H 0.127 0.873 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.067 0.933 39 H 0.154 0.846 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.999 -20.667 -8.370 31.322 hybrid contribution 0.740 0.031 0.592 0.949 sum -21.258 -20.635 -7.777 30.630 Atomic orbital electron populations 1.23917 0.95420 1.02718 0.98575 1.22657 0.95670 0.97723 1.01531 1.21898 0.87812 0.97074 0.92253 1.86050 1.41985 1.35710 1.58438 1.19243 0.90520 0.85651 0.94078 1.21214 1.04067 0.94128 1.04396 1.21073 0.91037 0.97352 0.94247 1.19927 1.00028 0.95193 1.02025 1.18111 0.80332 0.87154 0.79948 1.90783 1.70882 1.35218 1.45148 1.45848 1.31565 1.18407 1.41190 1.21603 0.92275 0.86785 1.00594 1.20761 0.90872 0.92011 0.94762 1.42175 1.34355 1.12868 1.48025 1.19152 1.05431 0.98970 1.14084 0.91069 1.24778 0.99825 0.96177 1.00003 1.69659 1.41384 1.04161 1.42646 0.86219 0.82113 0.76710 0.80815 1.21195 1.21611 1.21203 1.21174 0.97494 0.91243 0.96459 1.20349 0.96030 1.00198 1.01130 0.87329 0.88145 0.86147 0.91150 0.90688 0.84906 0.84231 0.76687 0.91116 0.91129 0.95769 0.95768 0.77984 0.93318 0.84610 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 14.31 29.02 0.42 -0.29 16 2 C -0.16 -0.84 9.89 -36.03 -0.36 -1.20 16 3 C 0.08 0.51 5.15 36.00 0.19 0.70 16 4 O -0.31 -2.72 10.11 -18.81 -0.19 -2.91 16 5 C 0.15 1.42 6.70 -39.02 -0.26 1.16 16 6 C -0.22 -1.99 9.01 -39.49 -0.36 -2.35 16 7 C -0.02 -0.20 9.58 -39.22 -0.38 -0.58 16 8 C -0.17 -2.03 5.87 -104.96 -0.62 -2.65 16 9 C 0.56 8.48 7.76 -12.44 -0.10 8.38 16 10 O -0.54 -10.27 16.34 5.29 0.09 -10.19 16 11 N -0.72 -10.21 5.51 -61.33 -0.34 -10.55 16 12 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16 13 C 0.14 2.84 6.37 -4.05 -0.03 2.81 16 14 N -0.73 -18.63 5.60 -59.91 -0.34 -18.97 16 15 C -0.25 -6.88 9.99 -15.06 -0.15 -7.03 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 19 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.04 -0.43 9.53 -39.22 -0.37 -0.81 16 24 C -0.16 -1.44 9.97 -39.50 -0.39 -1.83 16 25 H 0.11 0.32 8.06 -52.49 -0.42 -0.10 16 26 H 0.10 0.34 7.90 -52.49 -0.41 -0.07 16 27 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.07 0.36 7.36 -51.93 -0.38 -0.02 16 29 H 0.08 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.13 0.88 6.28 -52.48 -0.33 0.55 16 31 H 0.14 1.54 7.64 -52.49 -0.40 1.14 16 32 H 0.40 4.42 6.49 -40.82 -0.27 4.16 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.39 10.45 7.67 -40.82 -0.31 10.14 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.14 1.00 6.39 -52.48 -0.34 0.66 16 40 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -34.02 347.20 -7.71 -41.73 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.34 Total: 8.11 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.53 Total: -2.17 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.05 Total: -57.13 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.10 Total: -13.10 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.02 -7.71 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130371178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.417 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds