Wall clock time and date at job start Tue Mar 31 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00290 * 2 1 4 4 O 1.42896 * 109.47488 * 134.99823 * 3 2 1 5 5 C 1.35703 * 117.00248 * 179.97438 * 4 3 2 6 6 C 1.39001 * 119.91238 * 0.30191 * 5 4 3 7 7 C 1.37701 * 120.09036 * 180.25651 * 6 5 4 8 8 C 1.39740 * 119.91009 * 359.43945 * 7 6 5 9 9 C 1.47594 * 120.08984 * 180.30153 * 8 7 6 10 10 O 1.21587 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00311 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00361 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47163 * 179.97438 * 12 11 9 14 14 N 1.46498 * 109.46973 * 179.97438 * 13 12 11 15 15 C 1.36944 * 119.99946 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99629 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00133 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47075 * 59.99729 * 19 17 15 21 21 H 1.48498 * 109.47167 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46592 * 299.99931 * 19 17 15 23 23 C 1.39733 * 119.82362 * 0.28485 * 8 7 6 24 24 C 1.37709 * 119.90833 * 359.97438 * 23 8 7 25 25 H 1.07997 * 120.00372 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99807 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99807 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46861 * 14.99372 * 3 2 1 29 29 H 1.09005 * 109.46841 * 255.00330 * 3 2 1 30 30 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.04909 * 179.72495 * 7 6 5 32 32 H 0.97004 * 119.99698 * 359.97438 * 11 9 8 33 33 H 1.08999 * 109.46594 * 299.99752 * 12 11 9 34 34 H 1.08991 * 109.46752 * 59.99612 * 12 11 9 35 35 H 1.08997 * 109.47263 * 300.00438 * 13 12 11 36 36 H 1.09005 * 109.47165 * 59.99794 * 13 12 11 37 37 H 0.96994 * 120.00146 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00288 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.04691 * 180.02562 * 23 8 7 40 40 H 1.07999 * 119.95155 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6518 3.4674 0.3017 7 6 4.4461 4.5857 0.4221 8 6 5.5044 4.5938 1.3346 9 6 6.3542 5.7927 1.4717 10 8 6.1336 6.7753 0.7904 11 7 7.3747 5.7984 2.3519 12 6 8.2179 6.9887 2.4884 13 6 9.2929 6.7336 3.5467 14 7 10.1364 7.9236 3.6827 15 6 11.1728 7.9297 4.5778 16 1 11.3684 7.0570 5.1832 17 6 11.9717 9.0574 4.7070 18 7 11.7328 10.1211 3.9696 19 14 13.3858 9.0654 5.9276 20 1 14.3438 7.9848 5.5822 21 1 14.0787 10.3778 5.8738 22 1 12.8585 8.8404 7.2974 23 6 5.7558 3.4638 2.1173 24 6 4.9600 2.3475 1.9870 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4755 1.4867 -0.9927 30 1 2.8309 3.4620 -0.4002 31 1 4.2487 5.4571 -0.1846 32 1 7.5505 5.0146 2.8957 33 1 8.6934 7.2085 1.5325 34 1 7.6035 7.8362 2.7920 35 1 8.8171 6.5139 4.5024 36 1 9.9074 5.8858 3.2435 37 1 9.9604 8.7075 3.1392 38 1 12.2909 10.9094 4.0601 39 1 6.5725 3.4663 2.8240 40 1 5.1534 1.4739 2.5919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130371178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:33 Heat of formation + Delta-G solvation = -37.525965 kcal Electronic energy + Delta-G solvation = -21087.099583 eV Core-core repulsion = 17674.201942 eV Total energy + Delta-G solvation = -3412.897641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52869 -40.56958 -38.30071 -37.29651 -35.56452 -35.00769 -33.26185 -32.12961 -31.44337 -29.22115 -27.66914 -25.80115 -24.21269 -23.71377 -23.00742 -21.51704 -20.85364 -19.55404 -19.22914 -18.64126 -17.42178 -17.11338 -16.77610 -16.66351 -16.42197 -16.01443 -15.42632 -15.35739 -15.23213 -15.04145 -14.71541 -14.52551 -14.31324 -13.82131 -13.55915 -13.41409 -13.08000 -13.03082 -12.63174 -12.53737 -12.20159 -12.16880 -12.10964 -11.86521 -11.78110 -11.13265 -10.97149 -10.45080 -10.23263 -10.13180 -9.30905 -9.05846 -7.95720 -5.27358 -0.16789 0.28879 1.12183 1.49276 1.53121 1.59202 1.78734 2.04635 2.29317 2.58886 2.80175 3.38327 3.67146 3.69063 3.77676 3.93083 4.01715 4.08202 4.12942 4.17781 4.21926 4.29007 4.37076 4.50598 4.55411 4.58015 4.95016 4.96321 4.99800 5.11045 5.13281 5.20976 5.29126 5.35395 5.49518 5.54368 5.62225 5.69695 6.24565 6.30227 6.49589 7.15756 7.30986 8.02751 8.25891 9.27632 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.050229 B = 0.002062 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.310408 B =13578.463894 C =14079.401254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.177 4.177 3 C 0.077 3.923 4 O -0.317 6.317 5 C 0.153 3.847 6 C -0.216 4.216 7 C -0.028 4.028 8 C -0.190 4.190 9 C 0.557 3.443 10 O -0.588 6.588 11 N -0.706 5.706 12 C 0.128 3.872 13 C 0.149 3.851 14 N -0.747 5.747 15 C -0.251 4.251 16 H 0.084 0.916 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.980 3.020 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.275 1.275 23 C -0.037 4.037 24 C -0.161 4.161 25 H 0.120 0.880 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.131 0.869 32 H 0.415 0.585 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.374 0.626 38 H 0.252 0.748 39 H 0.159 0.841 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.790 -23.798 -7.287 33.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.003 3.997 4 O -0.230 6.230 5 C 0.106 3.894 6 C -0.234 4.234 7 C -0.047 4.047 8 C -0.193 4.193 9 C 0.346 3.654 10 O -0.470 6.470 11 N -0.359 5.359 12 C 0.003 3.997 13 C 0.022 3.978 14 N -0.390 5.390 15 C -0.382 4.382 16 H 0.102 0.898 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.809 3.191 20 H -0.201 1.201 21 H -0.223 1.223 22 H -0.201 1.201 23 C -0.055 4.055 24 C -0.180 4.180 25 H 0.139 0.861 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.174 0.826 31 H 0.149 0.851 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.205 0.795 38 H 0.061 0.939 39 H 0.176 0.824 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.815 -23.376 -7.518 33.518 hybrid contribution 0.822 0.694 0.287 1.113 sum -21.993 -22.683 -7.231 32.411 Atomic orbital electron populations 1.24131 0.95119 1.03731 0.96707 1.22682 0.96115 0.97402 1.03254 1.22135 0.87432 0.97967 0.92184 1.86054 1.42452 1.35390 1.59132 1.19437 0.90470 0.85784 0.93693 1.21379 1.04182 0.93250 1.04601 1.21119 0.91410 0.97912 0.94293 1.19743 1.00623 0.94791 1.04185 1.18630 0.80193 0.87589 0.78964 1.90755 1.72122 1.37179 1.46954 1.45623 1.30898 1.17970 1.41397 1.21183 0.91794 0.87684 0.99053 1.20855 0.90797 0.90248 0.95925 1.42411 1.34873 1.14193 1.47554 1.19633 1.05533 0.99151 1.13879 0.89825 1.25677 1.02858 0.96039 1.02300 1.69835 1.42701 1.04773 1.44745 0.85116 0.78883 0.76408 0.78737 1.20108 1.22330 1.20120 1.21355 0.97922 0.90312 0.95958 1.20619 0.95635 1.00581 1.01144 0.86149 0.87350 0.86233 0.90148 0.89770 0.82617 0.85077 0.74625 0.92697 0.92708 0.94294 0.94296 0.79466 0.93930 0.82403 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 14.31 67.78 0.97 -0.01 16 2 C -0.18 -1.56 9.89 25.65 0.25 -1.31 16 3 C 0.08 0.78 5.15 71.24 0.37 1.14 16 4 O -0.32 -4.91 10.11 -90.23 -0.91 -5.82 16 5 C 0.15 2.55 6.70 22.63 0.15 2.70 16 6 C -0.22 -3.57 9.01 22.33 0.20 -3.37 16 7 C -0.03 -0.61 9.58 22.51 0.22 -0.40 16 8 C -0.19 -4.44 5.87 -20.08 -0.12 -4.56 16 9 C 0.56 17.00 7.76 86.71 0.67 17.67 16 10 O -0.59 -23.09 16.34 -3.99 -0.07 -23.16 16 11 N -0.71 -19.55 5.51 -466.22 -2.57 -22.12 16 12 C 0.13 4.49 5.79 86.38 0.50 4.99 16 13 C 0.15 5.70 6.37 86.38 0.55 6.25 16 14 N -0.75 -38.25 5.60 -343.46 -1.92 -40.18 16 15 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 16 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 17 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 18 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 19 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C -0.04 -0.63 9.53 22.51 0.21 -0.42 16 24 C -0.16 -2.53 9.97 22.33 0.22 -2.31 16 25 H 0.12 0.44 8.06 -2.91 -0.02 0.41 16 26 H 0.11 0.48 7.90 -2.91 -0.02 0.46 16 27 H 0.12 1.04 8.06 -2.91 -0.02 1.01 16 28 H 0.08 0.64 7.36 -2.38 -0.02 0.63 16 29 H 0.08 0.68 7.66 -2.38 -0.02 0.67 16 30 H 0.16 1.74 6.28 -2.91 -0.02 1.72 16 31 H 0.13 2.99 7.64 -2.91 -0.02 2.97 16 32 H 0.42 8.41 6.49 -92.71 -0.60 7.80 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.37 20.73 7.67 -92.71 -0.71 20.02 16 38 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.16 1.86 6.39 -2.91 -0.02 1.84 16 40 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -73.53 347.20 2.10 -71.43 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.25 Total: 28.45 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.51 Total: 3.39 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -4.21 Total: -122.12 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.98 Total: -28.98 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.53 2.10 -71.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130371178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.903 kcal (2) G-P(sol) polarization free energy of solvation -73.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds