Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.86016 * 2 1 4 4 C 1.54696 * 110.94526 * 236.25984 * 2 1 3 5 5 O 1.43743 * 102.82069 * 267.22336 * 4 2 1 6 6 C 1.36001 * 109.31491 * 332.22625 * 5 4 2 7 7 C 1.39580 * 129.72372 * 198.51349 * 6 5 4 8 8 C 1.37470 * 120.43206 * 180.59408 * 7 6 5 9 9 C 1.39749 * 120.20450 * 0.09770 * 8 7 6 10 10 C 1.47604 * 120.26896 * 179.84794 * 9 8 7 11 11 O 1.21582 * 119.99739 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99933 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.46840 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00002 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00164 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00095 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47433 * 89.99724 * 20 18 16 22 22 H 1.48495 * 109.47040 * 209.99943 * 20 18 16 23 23 H 1.48501 * 109.47069 * 329.99442 * 20 18 16 24 24 C 1.39807 * 119.46461 * 0.11407 * 9 8 7 25 25 C 1.37309 * 119.85629 * 359.41126 * 24 9 8 26 26 H 1.09001 * 109.46831 * 182.28653 * 1 2 3 27 27 H 1.08997 * 109.47548 * 302.28813 * 1 2 3 28 28 H 1.09004 * 109.47162 * 62.29425 * 1 2 3 29 29 H 1.09003 * 110.74280 * 148.88801 * 4 2 1 30 30 H 1.08999 * 110.74677 * 25.55258 * 4 2 1 31 31 H 1.08004 * 119.78341 * 0.62178 * 7 6 5 32 32 H 1.08004 * 119.89644 * 180.02562 * 8 7 6 33 33 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 35 35 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 36 36 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 37 37 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 38 38 H 0.97005 * 120.00448 * 359.97438 * 15 14 13 39 39 H 0.96993 * 120.00311 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.07179 * 179.65681 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0830 -0.8024 -1.2014 5 8 2.2605 -2.1186 -0.6514 6 6 2.4894 -2.0202 0.6856 7 6 3.0478 -2.9487 1.5657 8 6 3.1807 -2.6499 2.9009 9 6 2.7550 -1.4120 3.3902 10 6 2.8939 -1.0911 4.8242 11 8 2.5214 -0.0127 5.2446 12 7 3.4327 -1.9937 5.6676 13 6 3.5700 -1.6754 7.0910 14 6 4.2061 -2.8608 7.8196 15 7 4.3440 -2.5422 9.2429 16 6 4.8915 -3.4593 10.0999 17 1 5.2213 -4.4176 9.7266 18 6 5.0217 -3.1576 11.4486 19 7 4.6194 -1.9900 11.9036 20 14 5.7692 -4.4084 12.6175 21 1 7.2388 -4.2062 12.6851 22 1 5.1828 -4.2336 13.9705 23 1 5.4802 -5.7796 12.1261 24 6 2.1913 -0.4822 2.5113 25 6 2.0722 -0.7870 1.1778 26 1 -0.3633 -1.0269 0.0410 27 1 -0.3634 0.5489 0.8687 28 1 -0.3634 0.4778 -0.9099 29 1 3.0361 -0.3914 -1.5343 30 1 1.3622 -0.8197 -2.0188 31 1 3.3781 -3.9079 1.1951 32 1 3.6144 -3.3746 3.5741 33 1 3.7288 -2.8544 5.3323 34 1 2.5863 -1.4733 7.5148 35 1 4.2032 -0.7958 7.2071 36 1 3.5733 -3.7407 7.7036 37 1 5.1898 -3.0624 7.3958 38 1 4.0475 -1.6816 9.5783 39 1 4.7107 -1.7790 12.8459 40 1 1.8539 0.4753 2.8799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132690555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = -32.632729 kcal Electronic energy + Delta-G solvation = -21726.346889 eV Core-core repulsion = 18313.661435 eV Total energy + Delta-G solvation = -3412.685454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65452 -39.73027 -37.29631 -35.69048 -34.43203 -33.84336 -31.42225 -30.69080 -30.17656 -27.66428 -27.12916 -24.36729 -23.24759 -23.03736 -21.47620 -21.39289 -20.28159 -17.89253 -17.56963 -17.30829 -16.76532 -16.33265 -15.70631 -15.33132 -14.77337 -14.52835 -14.29775 -13.98361 -13.84300 -13.78265 -13.47154 -13.32803 -13.13002 -12.91624 -12.85391 -12.67015 -12.12194 -11.53452 -11.46508 -11.19562 -11.10794 -10.97173 -10.82460 -10.80259 -10.13375 -9.95200 -9.72837 -9.29698 -9.01022 -8.86531 -8.47672 -6.99608 -5.79572 -3.10376 0.60420 0.99121 2.67374 2.88838 3.20881 3.42526 3.47478 3.49415 3.63011 3.88993 4.12212 4.45925 4.46908 4.56935 4.67604 4.77647 4.85635 4.93509 5.03090 5.11855 5.24110 5.26843 5.49381 5.50158 5.50554 5.68156 5.73995 5.77981 5.83904 5.95281 5.99196 6.04088 6.14241 6.15840 6.47423 6.70140 6.72278 6.76574 7.59972 7.65845 8.29269 8.38084 9.49259 10.03980 10.38714 11.43010 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044659 B = 0.002365 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.821173 B =11836.554210 C =12336.737899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.100 0.900 4 C 0.053 3.947 5 O -0.301 6.301 6 C 0.130 3.870 7 C -0.146 4.146 8 C -0.048 4.048 9 C -0.159 4.159 10 C 0.559 3.441 11 O -0.540 6.540 12 N -0.718 5.718 13 C 0.111 3.889 14 C 0.144 3.856 15 N -0.729 5.729 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.007 4.007 25 C -0.181 4.181 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.398 0.602 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 1.641 -28.957 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.118 0.882 4 C -0.022 4.022 5 O -0.214 6.214 6 C 0.084 3.916 7 C -0.164 4.164 8 C -0.067 4.067 9 C -0.162 4.162 10 C 0.346 3.654 11 O -0.419 6.419 12 N -0.369 5.369 13 C -0.013 4.013 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.026 4.026 25 C -0.182 4.182 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.279 2.071 -28.696 29.448 hybrid contribution 0.481 -0.667 0.669 1.060 sum -5.797 1.404 -28.027 28.655 Atomic orbital electron populations 1.21776 0.92704 1.02764 1.02610 1.21391 0.97328 1.00098 0.91079 0.88230 1.23977 1.01703 0.80105 0.96377 1.86796 1.86131 1.30122 1.18372 1.19842 0.93311 0.94493 0.83993 1.20163 1.04028 1.00264 0.91978 1.21072 0.95781 0.95363 0.94502 1.19825 1.06742 0.95910 0.93769 1.18030 0.77781 0.84216 0.85370 1.90787 1.49534 1.23366 1.78182 1.45835 1.62945 1.18807 1.09360 1.21611 1.01822 0.99516 0.78305 1.20760 0.97030 0.93915 0.86691 1.42189 1.75028 1.19008 1.01237 1.19191 1.32996 0.96320 0.88985 0.91017 1.24788 1.01788 0.97242 0.97067 1.69665 1.52493 1.21452 1.14254 0.86143 0.78762 0.80434 0.80533 1.21625 1.21693 1.20704 1.20340 0.93188 0.99020 0.90074 1.20649 1.05567 0.96889 0.95132 0.92092 0.91555 0.91718 0.90201 0.87341 0.84679 0.84420 0.76671 0.91091 0.91096 0.95750 0.95757 0.77977 0.93352 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.24 37.16 0.34 -0.53 16 2 C -0.08 -0.55 3.73 -90.40 -0.34 -0.89 16 3 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.05 0.32 7.54 38.05 0.29 0.61 16 5 O -0.30 -2.82 11.09 -19.75 -0.22 -3.04 16 6 C 0.13 1.30 7.04 -38.73 -0.27 1.03 16 7 C -0.15 -1.35 10.05 -39.36 -0.40 -1.74 16 8 C -0.05 -0.46 9.52 -39.30 -0.37 -0.84 16 9 C -0.16 -1.92 5.88 -104.92 -0.62 -2.54 16 10 C 0.56 8.43 7.77 -12.44 -0.10 8.33 16 11 O -0.54 -10.16 16.36 5.29 0.09 -10.08 16 12 N -0.72 -10.08 5.51 -61.33 -0.34 -10.42 16 13 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16 14 C 0.14 2.82 6.37 -4.04 -0.03 2.79 16 15 N -0.73 -18.58 5.60 -59.91 -0.34 -18.92 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.01 -0.08 9.58 -39.33 -0.38 -0.46 16 25 C -0.18 -1.78 5.61 -104.13 -0.58 -2.36 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 0.42 7.92 -51.93 -0.41 0.01 16 31 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.14 0.99 6.40 -52.48 -0.34 0.65 16 33 H 0.40 4.35 6.51 -40.82 -0.27 4.09 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.39 10.42 7.67 -40.82 -0.31 10.11 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.14 1.59 7.66 -52.48 -0.40 1.19 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -34.09 339.75 -8.21 -42.30 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.50 Total: 7.46 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.72 Total: -2.12 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.05 Total: -56.95 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.13 Total: -13.12 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.09 -8.21 -42.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132690555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.667 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds