Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.86016 * 2 1 4 4 C 1.54696 * 110.94526 * 236.25984 * 2 1 3 5 5 O 1.43743 * 102.82069 * 267.22336 * 4 2 1 6 6 C 1.36001 * 109.31491 * 332.22625 * 5 4 2 7 7 C 1.39580 * 129.72372 * 198.51349 * 6 5 4 8 8 C 1.37470 * 120.43206 * 180.59408 * 7 6 5 9 9 C 1.39749 * 120.20450 * 0.09770 * 8 7 6 10 10 C 1.47604 * 120.26896 * 179.84794 * 9 8 7 11 11 O 1.21582 * 119.99739 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99933 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.46840 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00002 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00164 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00095 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47433 * 89.99724 * 20 18 16 22 22 H 1.48495 * 109.47040 * 209.99943 * 20 18 16 23 23 H 1.48501 * 109.47069 * 329.99442 * 20 18 16 24 24 C 1.39807 * 119.46461 * 0.11407 * 9 8 7 25 25 C 1.37309 * 119.85629 * 359.41126 * 24 9 8 26 26 H 1.09001 * 109.46831 * 182.28653 * 1 2 3 27 27 H 1.08997 * 109.47548 * 302.28813 * 1 2 3 28 28 H 1.09004 * 109.47162 * 62.29425 * 1 2 3 29 29 H 1.09003 * 110.74280 * 148.88801 * 4 2 1 30 30 H 1.08999 * 110.74677 * 25.55258 * 4 2 1 31 31 H 1.08004 * 119.78341 * 0.62178 * 7 6 5 32 32 H 1.08004 * 119.89644 * 180.02562 * 8 7 6 33 33 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 35 35 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 36 36 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 37 37 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 38 38 H 0.97005 * 120.00448 * 359.97438 * 15 14 13 39 39 H 0.96993 * 120.00311 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.07179 * 179.65681 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0830 -0.8024 -1.2014 5 8 2.2605 -2.1186 -0.6514 6 6 2.4894 -2.0202 0.6856 7 6 3.0478 -2.9487 1.5657 8 6 3.1807 -2.6499 2.9009 9 6 2.7550 -1.4120 3.3902 10 6 2.8939 -1.0911 4.8242 11 8 2.5214 -0.0127 5.2446 12 7 3.4327 -1.9937 5.6676 13 6 3.5700 -1.6754 7.0910 14 6 4.2061 -2.8608 7.8196 15 7 4.3440 -2.5422 9.2429 16 6 4.8915 -3.4593 10.0999 17 1 5.2213 -4.4176 9.7266 18 6 5.0217 -3.1576 11.4486 19 7 4.6194 -1.9900 11.9036 20 14 5.7692 -4.4084 12.6175 21 1 7.2388 -4.2062 12.6851 22 1 5.1828 -4.2336 13.9705 23 1 5.4802 -5.7796 12.1261 24 6 2.1913 -0.4822 2.5113 25 6 2.0722 -0.7870 1.1778 26 1 -0.3633 -1.0269 0.0410 27 1 -0.3634 0.5489 0.8687 28 1 -0.3634 0.4778 -0.9099 29 1 3.0361 -0.3914 -1.5343 30 1 1.3622 -0.8197 -2.0188 31 1 3.3781 -3.9079 1.1951 32 1 3.6144 -3.3746 3.5741 33 1 3.7288 -2.8544 5.3323 34 1 2.5863 -1.4733 7.5148 35 1 4.2032 -0.7958 7.2071 36 1 3.5733 -3.7407 7.7036 37 1 5.1898 -3.0624 7.3958 38 1 4.0475 -1.6816 9.5783 39 1 4.7107 -1.7790 12.8459 40 1 1.8539 0.4753 2.8799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132690555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = -56.383846 kcal Electronic energy + Delta-G solvation = -21727.376815 eV Core-core repulsion = 18313.661435 eV Total energy + Delta-G solvation = -3413.715380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.34822 -40.87579 -38.16859 -37.30029 -35.59404 -34.96562 -33.22647 -31.59486 -31.07495 -29.22519 -27.65622 -25.91890 -24.47157 -23.91892 -23.04520 -22.07371 -21.34675 -19.38204 -18.75344 -18.25703 -17.64534 -17.11165 -16.87741 -16.67592 -16.46502 -15.70677 -15.27425 -15.22343 -15.09219 -14.87663 -14.60976 -14.49245 -14.15901 -13.93151 -13.55485 -13.39665 -13.08265 -13.03960 -12.76027 -12.66703 -12.51711 -12.08156 -12.02660 -11.87189 -11.84495 -11.63072 -11.16403 -10.98944 -10.24011 -10.04651 -9.26482 -9.06470 -7.96461 -5.27974 -0.25540 0.23470 1.48966 1.51475 1.59844 1.71012 1.99836 2.22805 2.58101 2.72348 3.29835 3.37797 3.52892 3.65635 3.80272 3.96488 4.01339 4.09735 4.16493 4.17053 4.21540 4.40749 4.48980 4.57579 4.60290 4.66427 4.76827 4.96417 4.98956 5.01529 5.07386 5.13001 5.22631 5.24836 5.27144 5.31761 5.42127 5.49404 6.05268 6.24229 6.47556 7.13504 7.30452 8.02199 8.25135 9.27273 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044659 B = 0.002365 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.821173 B =11836.554210 C =12336.737899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.112 0.888 4 C 0.050 3.950 5 O -0.312 6.312 6 C 0.126 3.874 7 C -0.147 4.147 8 C -0.040 4.040 9 C -0.179 4.179 10 C 0.559 3.441 11 O -0.586 6.586 12 N -0.705 5.705 13 C 0.127 3.873 14 C 0.149 3.851 15 N -0.748 5.748 16 C -0.247 4.247 17 H 0.084 0.916 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.980 3.020 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.265 1.265 24 C -0.020 4.020 25 C -0.187 4.187 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.416 0.584 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.374 0.626 39 H 0.252 0.748 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -0.157 -31.327 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 H 0.130 0.870 4 C -0.024 4.024 5 O -0.225 6.225 6 C 0.080 3.920 7 C -0.166 4.166 8 C -0.058 4.058 9 C -0.182 4.182 10 C 0.348 3.652 11 O -0.468 6.468 12 N -0.357 5.357 13 C 0.003 3.997 14 C 0.022 3.978 15 N -0.391 5.391 16 C -0.379 4.379 17 H 0.102 0.898 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.808 3.192 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.190 1.190 24 C -0.039 4.039 25 C -0.188 4.188 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.815 0.216 -31.138 31.677 hybrid contribution 0.305 -0.101 1.221 1.263 sum -5.509 0.115 -29.917 30.420 Atomic orbital electron populations 1.21769 0.92239 1.02153 1.03458 1.21519 0.97701 1.00601 0.90160 0.86989 1.24270 1.03213 0.78510 0.96371 1.86785 1.85861 1.32008 1.17862 1.20121 0.92772 0.94553 0.84583 1.20463 1.03409 1.01086 0.91617 1.21285 0.94804 0.94541 0.95175 1.19627 1.09176 0.97589 0.91823 1.18511 0.76630 0.83428 0.86598 1.90759 1.51575 1.25315 1.79172 1.45598 1.62745 1.19599 1.07806 1.21193 1.00367 0.98157 0.79999 1.20856 0.98081 0.94912 0.83962 1.42432 1.74938 1.18236 1.03491 1.19659 1.31737 0.96913 0.89549 0.89786 1.25692 1.03129 0.99261 0.99003 1.69837 1.54528 1.23600 1.14201 0.85046 0.77657 0.78691 0.77768 1.21280 1.22369 1.18969 1.20336 0.93850 0.98720 0.90972 1.20898 1.05222 0.97648 0.95066 0.93220 0.92444 0.89339 0.88756 0.84851 0.82311 0.81952 0.74576 0.92671 0.92646 0.94258 0.94229 0.79458 0.93915 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.24 71.98 0.67 -0.84 16 2 C -0.08 -0.98 3.73 -10.65 -0.04 -1.02 16 3 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.05 0.48 7.54 72.56 0.55 1.02 16 5 O -0.31 -5.11 11.09 -93.57 -1.04 -6.15 16 6 C 0.13 2.30 7.04 22.82 0.16 2.46 16 7 C -0.15 -2.37 10.05 22.41 0.23 -2.14 16 8 C -0.04 -0.68 9.52 22.45 0.21 -0.47 16 9 C -0.18 -4.25 5.88 -20.06 -0.12 -4.37 16 10 C 0.56 17.03 7.77 86.72 0.67 17.71 16 11 O -0.59 -23.01 16.36 -3.97 -0.07 -23.07 16 12 N -0.70 -19.31 5.51 -466.20 -2.57 -21.87 16 13 C 0.13 4.45 5.79 86.38 0.50 4.95 16 14 C 0.15 5.66 6.37 86.38 0.55 6.21 16 15 N -0.75 -38.15 5.60 -343.46 -1.92 -40.07 16 16 C -0.25 -13.66 9.99 84.03 0.84 -12.83 16 17 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 19 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 20 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 C -0.02 -0.45 9.58 22.43 0.21 -0.24 16 25 C -0.19 -3.49 5.61 -19.54 -0.11 -3.60 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.13 0.58 7.92 -2.39 -0.02 0.56 16 31 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 32 H 0.16 1.84 6.40 -2.91 -0.02 1.82 16 33 H 0.42 8.25 6.51 -92.71 -0.60 7.65 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.37 20.67 7.67 -92.70 -0.71 19.96 16 39 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.13 3.11 7.66 -2.91 -0.02 3.09 16 Total: -1.00 -74.34 339.75 1.26 -73.08 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.25 Total: 27.41 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 4.79 Total: 2.78 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -4.21 Total: -121.87 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -1.10 Total: -29.22 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -74.34 1.26 -73.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132690555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.699 kcal (2) G-P(sol) polarization free energy of solvation -74.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds