Wall clock time and date at job start Tue Mar 31 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21291 * 119.99988 * 2 1 4 4 N 1.34782 * 120.00109 * 180.02562 * 2 1 3 5 5 C 1.39928 * 119.99833 * 185.27106 * 4 2 1 6 6 C 1.38873 * 120.07162 * 33.29412 * 5 4 2 7 7 C 1.38110 * 119.92796 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.07154 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.92714 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47545 * 19.99837 * 9 8 7 11 11 C 1.53002 * 109.47092 * 259.99660 * 9 8 7 12 12 N 1.46503 * 109.46872 * 139.99668 * 9 8 7 13 13 C 1.34776 * 119.99750 * 204.99710 * 12 9 8 14 14 O 1.21272 * 120.00261 * 359.72766 * 13 12 9 15 15 C 1.50704 * 119.99643 * 180.02562 * 13 12 9 16 16 C 1.50696 * 109.46941 * 179.72462 * 15 13 12 17 17 H 1.07998 * 120.00155 * 0.02562 * 16 15 13 18 18 C 1.37886 * 119.99913 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99749 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00014 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46962 * 60.00211 * 20 18 16 22 22 H 1.48493 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47113 * 300.00559 * 20 18 16 24 24 C 1.38278 * 120.13949 * 0.24950 * 8 7 6 25 25 C 1.38114 * 120.07384 * 359.49508 * 24 8 7 26 26 H 1.08995 * 109.47428 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46994 * 299.99845 * 1 2 3 28 28 H 1.09001 * 109.47655 * 59.99517 * 1 2 3 29 29 H 0.96994 * 119.99765 * 5.27075 * 4 2 1 30 30 H 1.07999 * 120.03560 * 359.97438 * 6 5 4 31 31 H 1.08000 * 119.96441 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.47069 * 300.00468 * 11 9 8 33 33 H 1.09000 * 109.46744 * 60.00155 * 11 9 8 34 34 H 1.08995 * 109.46898 * 180.02562 * 11 9 8 35 35 H 0.97002 * 119.99741 * 25.00011 * 12 9 8 36 36 H 1.09004 * 109.46949 * 299.72439 * 15 13 12 37 37 H 1.08994 * 109.47597 * 59.72045 * 15 13 12 38 38 H 0.96997 * 119.99417 * 179.97438 * 19 18 16 39 39 H 1.07996 * 119.96310 * 179.74600 * 24 8 7 40 40 H 1.07997 * 120.03901 * 180.25641 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5757 -1.1698 0.1108 6 6 4.2150 -0.1982 0.8697 7 6 5.5919 -0.2032 0.9771 8 6 6.3339 -1.1740 0.3296 9 6 7.8361 -1.1760 0.4485 10 1 8.1320 -0.6015 1.3263 11 6 8.4478 -0.5449 -0.8039 12 7 8.3134 -2.5545 0.5836 13 6 9.4908 -2.8036 1.1903 14 8 10.1576 -1.8862 1.6200 15 6 9.9820 -4.2216 1.3287 16 6 11.3148 -4.2251 2.0320 17 1 11.7613 -3.2938 2.3476 18 6 11.9637 -5.4175 2.2735 19 7 11.4197 -6.5516 1.8896 20 14 13.6154 -5.4219 3.1459 21 1 13.4651 -4.8160 4.4933 22 1 14.0995 -6.8191 3.2822 23 1 14.5949 -4.6340 2.3553 24 6 5.7007 -2.1394 -0.4314 25 6 4.3237 -2.1431 -0.5386 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6989 -2.0054 -0.0781 30 1 3.6361 0.5610 1.3746 31 1 6.0896 0.5519 1.5674 32 1 8.1520 -1.1194 -1.6817 33 1 8.0926 0.4807 -0.9043 34 1 9.5343 -0.5468 -0.7180 35 1 7.7820 -3.2879 0.2363 36 1 9.2633 -4.8000 1.9092 37 1 10.0919 -4.6663 0.3397 38 1 11.8764 -7.3904 2.0592 39 1 6.2833 -2.8937 -0.9392 40 1 3.8295 -2.8998 -1.1297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:32 Heat of formation + Delta-G solvation = -57.330192 kcal Electronic energy + Delta-G solvation = -21961.794775 eV Core-core repulsion = 18548.038359 eV Total energy + Delta-G solvation = -3413.756417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80328 -39.39543 -38.24122 -35.74436 -34.16872 -32.89398 -31.39677 -31.04490 -30.29817 -28.54100 -27.98648 -24.17619 -23.54892 -22.81654 -21.29171 -20.48117 -19.44038 -18.13301 -17.23203 -16.62796 -16.35261 -15.91663 -15.35224 -15.06618 -14.64168 -14.42744 -14.25798 -14.22218 -13.62102 -13.52016 -13.35279 -13.03668 -12.94772 -12.72501 -12.50968 -12.23027 -12.03612 -11.73735 -11.34190 -11.14927 -10.82720 -10.75842 -10.57127 -10.51998 -10.18979 -9.92962 -9.26002 -9.02777 -8.65459 -8.49213 -8.38743 -8.17117 -6.03492 -4.02644 1.07154 1.31013 2.23467 2.72446 3.39225 3.41036 3.46616 3.62684 3.76541 3.99289 4.29946 4.51389 4.64260 4.73008 4.76656 4.86528 4.90906 5.23041 5.29757 5.34599 5.37016 5.40658 5.55022 5.58193 5.83871 5.89752 6.05243 6.08934 6.14435 6.31023 6.37638 6.42574 6.60916 6.87341 7.02421 7.10591 7.22896 7.35879 7.72876 7.98411 8.08937 8.47425 9.08011 9.27283 9.62248 11.08948 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035923 B = 0.002681 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.265000 B =10440.389153 C =10786.109623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.527 6.527 4 N -0.673 5.673 5 C 0.135 3.865 6 C -0.117 4.117 7 C -0.090 4.090 8 C -0.093 4.093 9 C 0.181 3.819 10 H 0.091 0.909 11 C -0.156 4.156 12 N -0.743 5.743 13 C 0.516 3.484 14 O -0.545 6.545 15 C 0.005 3.995 16 C -0.507 4.507 17 H 0.075 0.925 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.093 4.093 25 C -0.140 4.140 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.411 0.589 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.394 0.606 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.262 0.738 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.684 8.531 -6.584 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.402 6.402 4 N -0.319 5.319 5 C 0.041 3.959 6 C -0.137 4.137 7 C -0.109 4.109 8 C -0.095 4.095 9 C 0.076 3.924 10 H 0.109 0.891 11 C -0.214 4.214 12 N -0.398 5.398 13 C 0.306 3.694 14 O -0.421 6.421 15 C -0.034 4.034 16 C -0.545 4.545 17 H 0.093 0.907 18 C -0.147 4.147 19 N -0.542 5.542 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.112 4.112 25 C -0.161 4.161 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.247 0.753 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.778 9.786 -6.241 25.565 hybrid contribution 0.208 -0.993 0.149 1.026 sum -22.570 8.792 -6.092 24.976 Atomic orbital electron populations 1.21855 0.90776 1.04563 1.05713 1.21019 0.90880 0.83225 0.75242 1.90766 1.70473 1.31220 1.47729 1.43686 1.05472 1.09836 1.72912 1.17728 0.82462 0.97892 0.97800 1.21057 0.94626 0.99298 0.98737 1.20927 0.93089 0.98180 0.98730 1.20077 0.95482 0.95921 0.97983 1.19646 0.87937 0.85490 0.99336 0.89065 1.22154 1.01999 1.00190 0.97075 1.46487 1.23630 1.06976 1.62714 1.22001 0.78736 0.94090 0.74562 1.90527 1.55756 1.47535 1.48305 1.19233 0.98074 0.86679 0.99416 1.21133 1.02929 0.93656 1.36828 0.90736 1.25012 0.98277 0.95400 0.95981 1.69952 1.39086 0.97588 1.47543 0.86482 0.83632 0.76640 0.80244 1.20137 1.21405 1.20136 1.20771 0.93603 0.98438 0.98367 1.20823 0.93988 1.00222 1.01025 0.90308 0.88293 0.88403 0.75345 0.84956 0.85413 0.92590 0.92164 0.91430 0.77154 0.93524 0.93502 0.92897 0.85373 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.39 36.00 0.37 -0.27 16 2 C 0.51 4.33 7.68 -10.99 -0.08 4.25 16 3 O -0.53 -6.92 14.79 5.55 0.08 -6.84 16 4 N -0.67 -5.11 5.34 -9.86 -0.05 -5.17 16 5 C 0.13 1.44 6.28 -83.69 -0.53 0.91 16 6 C -0.12 -1.44 8.66 -39.39 -0.34 -1.78 16 7 C -0.09 -1.13 9.66 -39.61 -0.38 -1.52 16 8 C -0.09 -1.21 4.96 -104.59 -0.52 -1.73 16 9 C 0.18 2.76 2.77 -69.08 -0.19 2.57 16 10 H 0.09 1.54 7.44 -51.93 -0.39 1.16 16 11 C -0.16 -2.21 9.46 37.16 0.35 -1.86 16 12 N -0.74 -12.84 5.03 -54.93 -0.28 -13.11 16 13 C 0.52 11.75 7.79 -10.98 -0.09 11.67 16 14 O -0.55 -14.19 15.12 5.56 0.08 -14.11 16 15 C 0.01 0.13 5.46 -29.03 -0.16 -0.03 16 16 C -0.51 -14.81 8.92 -34.44 -0.31 -15.12 16 17 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.09 -1.06 9.04 -39.61 -0.36 -1.41 16 25 C -0.14 -1.40 9.96 -39.39 -0.39 -1.79 16 26 H 0.08 0.10 7.92 -51.93 -0.41 -0.31 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.41 1.64 8.66 -40.82 -0.35 1.28 16 30 H 0.13 1.68 6.41 -52.49 -0.34 1.34 16 31 H 0.13 1.46 8.03 -52.49 -0.42 1.04 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.39 5.83 6.88 -40.82 -0.28 5.55 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.13 1.30 6.93 -52.49 -0.36 0.94 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -36.04 343.29 -7.42 -43.46 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.43 Total: 3.77 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.72 Total: -4.65 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.41 Total: -44.09 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.17 Total: -20.95 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.04 -7.42 -43.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.872 kcal (2) G-P(sol) polarization free energy of solvation -36.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds