Wall clock time and date at job start Tue Mar 31 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21291 * 119.99988 * 2 1 4 4 N 1.34782 * 120.00109 * 180.02562 * 2 1 3 5 5 C 1.39928 * 119.99833 * 185.27106 * 4 2 1 6 6 C 1.38873 * 120.07162 * 33.29412 * 5 4 2 7 7 C 1.38110 * 119.92796 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.07154 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.92714 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47545 * 19.99837 * 9 8 7 11 11 C 1.53002 * 109.47092 * 259.99660 * 9 8 7 12 12 N 1.46503 * 109.46872 * 139.99668 * 9 8 7 13 13 C 1.34776 * 119.99750 * 204.99710 * 12 9 8 14 14 O 1.21272 * 120.00261 * 359.72766 * 13 12 9 15 15 C 1.50704 * 119.99643 * 180.02562 * 13 12 9 16 16 C 1.50696 * 109.46941 * 179.72462 * 15 13 12 17 17 H 1.07998 * 120.00155 * 0.02562 * 16 15 13 18 18 C 1.37886 * 119.99913 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99749 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00014 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46962 * 60.00211 * 20 18 16 22 22 H 1.48493 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47113 * 300.00559 * 20 18 16 24 24 C 1.38278 * 120.13949 * 0.24950 * 8 7 6 25 25 C 1.38114 * 120.07384 * 359.49508 * 24 8 7 26 26 H 1.08995 * 109.47428 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46994 * 299.99845 * 1 2 3 28 28 H 1.09001 * 109.47655 * 59.99517 * 1 2 3 29 29 H 0.96994 * 119.99765 * 5.27075 * 4 2 1 30 30 H 1.07999 * 120.03560 * 359.97438 * 6 5 4 31 31 H 1.08000 * 119.96441 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.47069 * 300.00468 * 11 9 8 33 33 H 1.09000 * 109.46744 * 60.00155 * 11 9 8 34 34 H 1.08995 * 109.46898 * 180.02562 * 11 9 8 35 35 H 0.97002 * 119.99741 * 25.00011 * 12 9 8 36 36 H 1.09004 * 109.46949 * 299.72439 * 15 13 12 37 37 H 1.08994 * 109.47597 * 59.72045 * 15 13 12 38 38 H 0.96997 * 119.99417 * 179.97438 * 19 18 16 39 39 H 1.07996 * 119.96310 * 179.74600 * 24 8 7 40 40 H 1.07997 * 120.03901 * 180.25641 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5757 -1.1698 0.1108 6 6 4.2150 -0.1982 0.8697 7 6 5.5919 -0.2032 0.9771 8 6 6.3339 -1.1740 0.3296 9 6 7.8361 -1.1760 0.4485 10 1 8.1320 -0.6015 1.3263 11 6 8.4478 -0.5449 -0.8039 12 7 8.3134 -2.5545 0.5836 13 6 9.4908 -2.8036 1.1903 14 8 10.1576 -1.8862 1.6200 15 6 9.9820 -4.2216 1.3287 16 6 11.3148 -4.2251 2.0320 17 1 11.7613 -3.2938 2.3476 18 6 11.9637 -5.4175 2.2735 19 7 11.4197 -6.5516 1.8896 20 14 13.6154 -5.4219 3.1459 21 1 13.4651 -4.8160 4.4933 22 1 14.0995 -6.8191 3.2822 23 1 14.5949 -4.6340 2.3553 24 6 5.7007 -2.1394 -0.4314 25 6 4.3237 -2.1431 -0.5386 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6989 -2.0054 -0.0781 30 1 3.6361 0.5610 1.3746 31 1 6.0896 0.5519 1.5674 32 1 8.1520 -1.1194 -1.6817 33 1 8.0926 0.4807 -0.9043 34 1 9.5343 -0.5468 -0.7180 35 1 7.7820 -3.2879 0.2363 36 1 9.2633 -4.8000 1.9092 37 1 10.0919 -4.6663 0.3397 38 1 11.8764 -7.3904 2.0592 39 1 6.2833 -2.8937 -0.9392 40 1 3.8295 -2.8998 -1.1297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:32 Heat of formation + Delta-G solvation = -82.607173 kcal Electronic energy + Delta-G solvation = -21962.890868 eV Core-core repulsion = 18548.038359 eV Total energy + Delta-G solvation = -3414.852509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61063 -40.72221 -39.51354 -36.89091 -35.28004 -35.06394 -32.62554 -31.94412 -31.25488 -30.31080 -28.88493 -25.94737 -24.68319 -23.93076 -22.25382 -21.57640 -20.92148 -18.92251 -18.51051 -18.07050 -17.89203 -17.08875 -16.55625 -16.41112 -16.10095 -15.95433 -15.38342 -15.24623 -14.70389 -14.60748 -14.43306 -14.30156 -14.08290 -13.69769 -13.66217 -13.31121 -13.12721 -13.05986 -12.84832 -12.72714 -12.54387 -12.30789 -12.02005 -11.90433 -11.45550 -11.37805 -10.96753 -10.61528 -10.50692 -10.02904 -9.91562 -9.06646 -8.24145 -6.30917 0.17313 0.41405 1.40713 1.43519 1.52086 1.56175 1.91738 2.12170 2.33155 2.50962 2.82075 3.11168 3.61938 3.76688 3.92379 4.02286 4.23802 4.28849 4.40235 4.45216 4.48884 4.58120 4.61510 4.65876 4.74246 4.94130 5.03619 5.09878 5.10114 5.16531 5.26281 5.29043 5.30746 5.46755 5.49843 5.69597 5.78088 6.00134 6.07685 6.44533 6.72270 6.85646 7.13011 7.35018 7.53797 8.87806 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035923 B = 0.002681 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.265000 B =10440.389153 C =10786.109623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.502 3.498 3 O -0.579 6.579 4 N -0.661 5.661 5 C 0.135 3.865 6 C -0.133 4.133 7 C -0.099 4.099 8 C -0.107 4.107 9 C 0.183 3.817 10 H 0.069 0.931 11 C -0.150 4.150 12 N -0.720 5.720 13 C 0.520 3.480 14 O -0.584 6.584 15 C 0.009 3.991 16 C -0.537 4.537 17 H 0.054 0.946 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.273 1.273 24 C -0.095 4.095 25 C -0.132 4.132 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.430 0.570 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.409 0.591 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.267 0.733 39 H 0.143 0.857 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.635 7.505 -7.463 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.293 3.707 3 O -0.458 6.458 4 N -0.308 5.308 5 C 0.040 3.960 6 C -0.153 4.153 7 C -0.118 4.118 8 C -0.108 4.108 9 C 0.079 3.921 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.374 5.374 13 C 0.310 3.690 14 O -0.463 6.463 15 C -0.031 4.031 16 C -0.575 4.575 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.199 1.199 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.114 4.114 25 C -0.152 4.152 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.270 0.730 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.246 0.754 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -24.810 8.713 -7.150 27.250 hybrid contribution 0.681 -0.671 0.390 1.032 sum -24.129 8.042 -6.761 26.317 Atomic orbital electron populations 1.21897 0.86775 1.06977 1.06301 1.21945 0.92721 0.82432 0.73620 1.90749 1.71863 1.33110 1.50118 1.43693 1.04310 1.10844 1.71998 1.17916 0.84112 0.97196 0.96757 1.21069 0.94455 1.00018 0.99762 1.20968 0.93460 0.98415 0.98979 1.19823 0.93673 0.97405 0.99891 1.19676 0.89851 0.83510 0.99069 0.91247 1.22089 1.00134 1.01543 0.97027 1.46175 1.21774 1.08800 1.60651 1.21458 0.80021 0.92543 0.75008 1.90507 1.57394 1.48078 1.50359 1.19074 0.96818 0.88515 0.98667 1.21346 1.04820 0.93239 1.38097 0.92755 1.25781 1.01732 0.94932 0.96436 1.70019 1.40409 0.98041 1.47897 0.85525 0.79314 0.77313 0.79019 1.19860 1.19833 1.19806 1.20983 0.94567 0.98017 0.97813 1.21125 0.93356 1.00353 1.00407 0.87025 0.87709 0.87604 0.72979 0.85960 0.85459 0.90967 0.90396 0.94054 0.75409 0.94038 0.93792 0.92388 0.83980 0.82208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 10.39 71.23 0.74 -0.01 16 2 C 0.50 7.70 7.68 87.65 0.67 8.38 16 3 O -0.58 -15.13 14.79 -3.06 -0.05 -15.17 16 4 N -0.66 -8.36 5.34 -303.50 -1.62 -9.98 16 5 C 0.13 2.62 6.28 38.15 0.24 2.86 16 6 C -0.13 -3.23 8.66 22.39 0.19 -3.04 16 7 C -0.10 -2.51 9.66 22.25 0.21 -2.29 16 8 C -0.11 -2.69 4.96 -19.84 -0.10 -2.79 16 9 C 0.18 5.60 2.77 44.24 0.12 5.73 16 10 H 0.07 2.44 7.44 -2.39 -0.02 2.43 16 11 C -0.15 -4.20 9.46 71.98 0.68 -3.52 16 12 N -0.72 -24.79 5.03 -446.10 -2.24 -27.03 16 13 C 0.52 24.22 7.79 87.66 0.68 24.90 16 14 O -0.58 -31.46 15.12 -3.01 -0.05 -31.50 16 15 C 0.01 0.45 5.46 29.10 0.16 0.61 16 16 C -0.54 -32.01 8.92 25.60 0.23 -31.78 16 17 H 0.05 3.41 6.75 -2.91 -0.02 3.39 16 18 C 0.01 0.57 5.46 84.66 0.46 1.03 16 19 N -0.92 -54.22 13.29 21.45 0.28 -53.94 16 20 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 C -0.10 -1.95 9.04 22.25 0.20 -1.75 16 25 C -0.13 -2.24 9.96 22.39 0.22 -2.02 16 26 H 0.11 -0.21 7.92 -2.39 -0.02 -0.23 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.43 1.84 8.66 -92.71 -0.80 1.03 16 30 H 0.12 3.20 6.41 -2.91 -0.02 3.18 16 31 H 0.13 3.07 8.03 -2.91 -0.02 3.05 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.41 11.64 6.88 -92.71 -0.64 11.00 16 36 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.14 2.47 6.93 -2.91 -0.02 2.45 16 40 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -79.90 343.29 2.71 -77.19 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.37 Total: 16.35 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 4.72 Total: -3.69 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -3.58 Total: -90.95 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.09 Total: -46.67 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.90 2.71 -77.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.420 kcal (2) G-P(sol) polarization free energy of solvation -79.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds