Wall clock time and date at job start Tue Mar 31 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.86499 * 2 1 4 4 C 1.51642 * 110.94682 * 123.74665 * 2 1 3 5 5 C 1.37743 * 132.18265 * 282.45744 * 4 2 1 6 6 C 1.38344 * 119.97842 * 180.34149 * 5 4 2 7 7 C 1.38289 * 119.77022 * 359.97438 * 6 5 4 8 8 C 1.37932 * 120.34860 * 359.85231 * 7 6 5 9 9 C 1.38890 * 107.03111 * 102.47802 * 4 2 1 10 10 O 1.36385 * 111.33653 * 359.50321 * 9 4 2 11 11 C 1.43761 * 109.14020 * 18.36403 * 10 9 4 12 12 H 1.08998 * 110.75341 * 91.09389 * 11 10 9 13 13 C 1.50700 * 110.74371 * 214.25536 * 11 10 9 14 14 O 1.21283 * 120.00275 * 1.08396 * 13 11 10 15 15 N 1.34777 * 120.00075 * 181.08297 * 13 11 10 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47198 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.47198 * 179.97438 * 17 16 15 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 16 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47080 * 120.00466 * 23 21 19 26 26 H 1.48506 * 109.47018 * 240.00565 * 23 21 19 27 27 H 1.09004 * 109.47139 * 183.73546 * 1 2 3 28 28 H 1.08999 * 109.46854 * 303.73345 * 1 2 3 29 29 H 1.08997 * 109.47507 * 63.73038 * 1 2 3 30 30 H 1.07999 * 120.00569 * 0.34746 * 5 4 2 31 31 H 1.07996 * 120.11676 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.82850 * 179.83352 * 7 6 5 33 33 H 1.07997 * 119.88015 * 180.02562 * 8 7 6 34 34 H 0.97000 * 119.99549 * 0.02562 * 15 13 11 35 35 H 1.08995 * 109.47424 * 60.00473 * 16 15 13 36 36 H 1.09006 * 109.46868 * 300.00024 * 16 15 13 37 37 H 1.09009 * 109.46730 * 59.99787 * 17 16 15 38 38 H 1.08998 * 109.46846 * 300.00332 * 17 16 15 39 39 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 40 40 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0721 -0.7867 1.1776 5 6 2.1971 -0.4816 2.5150 6 6 2.7460 -1.4054 3.3864 7 6 3.1668 -2.6334 2.9096 8 6 3.0392 -2.9424 1.5714 9 6 2.4855 -2.0189 0.6879 10 8 2.2640 -2.1192 -0.6541 11 6 2.0829 -0.8024 -1.2017 12 1 3.0342 -0.3893 -1.5370 13 6 1.0860 -0.8266 -2.3316 14 8 0.5484 -1.8680 -2.6439 15 7 0.7917 0.3090 -2.9951 16 6 -0.1778 0.2855 -4.0931 17 6 -0.3274 1.6941 -4.6716 18 7 -1.2965 1.6705 -5.7701 19 6 -1.5907 2.8232 -6.4483 20 1 -1.1117 3.7504 -6.1706 21 6 -2.5046 2.7998 -7.4929 22 7 -3.0887 1.6697 -7.8311 23 14 -2.9066 4.3722 -8.4176 24 1 -2.1222 5.4965 -7.8467 25 1 -2.5598 4.2054 -9.8519 26 1 -4.3569 4.6647 -8.2898 27 1 -0.3633 -1.0255 0.0670 28 1 -0.3633 0.5707 0.8546 29 1 -0.3634 0.4548 -0.9215 30 1 1.8667 0.4784 2.8831 31 1 2.8454 -1.1683 4.4353 32 1 3.5978 -3.3542 3.5886 33 1 3.3700 -3.9038 1.2074 34 1 1.2219 1.1418 -2.7456 35 1 -1.1421 -0.0582 -3.7191 36 1 0.1721 -0.3917 -4.8724 37 1 0.6372 2.0375 -5.0458 38 1 -0.6769 2.3715 -3.8926 39 1 -1.7264 0.8376 -6.0197 40 1 -3.7275 1.6535 -8.5608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153641664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:13 Heat of formation + Delta-G solvation = -25.583067 kcal Electronic energy + Delta-G solvation = -22270.499537 eV Core-core repulsion = 18858.119779 eV Total energy + Delta-G solvation = -3412.379758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.81713 -39.41295 -37.54404 -35.72991 -34.50004 -33.72104 -31.35180 -30.55709 -30.16193 -28.20232 -26.99207 -24.27743 -23.33732 -22.50845 -21.53578 -21.37653 -20.31531 -17.66560 -17.53793 -17.27902 -17.02117 -16.49544 -15.61834 -15.35009 -14.73665 -14.58668 -14.40002 -14.12556 -13.96528 -13.47430 -13.33357 -13.22355 -13.13437 -12.91974 -12.90041 -12.40700 -11.87673 -11.64730 -11.49861 -11.25004 -11.15958 -10.94826 -10.85894 -10.84842 -10.11901 -9.92263 -9.73535 -9.22771 -9.06233 -8.90480 -8.45132 -7.03066 -5.82697 -3.13778 0.96163 1.07205 2.41316 2.56727 3.30149 3.40097 3.44611 3.47820 3.49165 3.93805 4.14320 4.48651 4.52196 4.56746 4.69712 4.75500 4.84753 5.05409 5.11027 5.18887 5.25648 5.44532 5.46029 5.48815 5.59990 5.71677 5.72379 5.89848 5.97896 5.99940 6.08308 6.10449 6.16005 6.26766 6.38106 6.64303 6.65652 6.86844 7.44448 7.63267 8.14635 8.34731 9.46145 10.00380 10.34844 11.39862 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045492 B = 0.002567 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.346051 B =10902.995629 C =11252.772995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 H 0.107 0.893 4 C -0.168 4.168 5 C -0.065 4.065 6 C -0.151 4.151 7 C -0.084 4.084 8 C -0.137 4.137 9 C 0.108 3.892 10 O -0.272 6.272 11 C 0.064 3.936 12 H 0.113 0.887 13 C 0.521 3.479 14 O -0.515 6.515 15 N -0.718 5.718 16 C 0.112 3.888 17 C 0.145 3.855 18 N -0.730 5.730 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.386 0.614 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.315 -4.188 23.364 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 H 0.125 0.875 4 C -0.169 4.169 5 C -0.084 4.084 6 C -0.169 4.169 7 C -0.102 4.102 8 C -0.156 4.156 9 C 0.063 3.937 10 O -0.185 6.185 11 C 0.004 3.996 12 H 0.130 0.870 13 C 0.304 3.696 14 O -0.390 6.390 15 N -0.371 5.371 16 C -0.011 4.011 17 C 0.017 3.983 18 N -0.375 5.375 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.220 0.780 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.885 -4.988 22.900 27.241 hybrid contribution -0.176 1.079 -0.545 1.222 sum 13.709 -3.909 22.355 26.513 Atomic orbital electron populations 1.21923 0.92104 1.03420 1.03415 1.21314 0.97830 0.99640 0.89762 0.87533 1.20687 1.04328 0.96494 0.95390 1.20304 0.97560 0.99606 0.90885 1.21038 1.02041 0.94146 0.99722 1.20889 0.98382 0.96878 0.94092 1.20284 1.03146 0.99881 0.92305 1.19707 0.95115 0.94921 0.83962 1.87022 1.86292 1.27327 1.17855 1.23307 0.99461 0.82815 0.94032 0.86951 1.19791 0.82737 0.84381 0.82675 1.90772 1.51480 1.30685 1.66034 1.45819 1.45339 1.10214 1.35761 1.21634 0.91826 0.99688 0.87992 1.20752 0.94007 0.92112 0.91422 1.42196 1.48747 1.09908 1.36632 1.19224 1.19760 0.88051 1.10482 0.90959 1.24794 0.99597 0.97179 0.99292 1.69681 1.31871 1.24621 1.31606 0.86075 0.77824 0.82365 0.79626 1.20504 1.21757 1.21750 0.91768 0.91272 0.90703 0.85657 0.85441 0.85110 0.85286 0.76515 0.91040 0.91030 0.95730 0.95715 0.77974 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.42 37.16 0.31 -1.26 16 2 C -0.07 -0.62 3.63 -90.41 -0.33 -0.95 16 3 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.17 -1.69 5.63 -104.10 -0.59 -2.28 16 5 C -0.07 -0.54 10.03 -39.72 -0.40 -0.94 16 6 C -0.15 -1.11 10.07 -39.52 -0.40 -1.51 16 7 C -0.08 -0.65 10.02 -39.67 -0.40 -1.05 16 8 C -0.14 -1.35 10.06 -39.30 -0.40 -1.74 16 9 C 0.11 1.28 7.04 -38.95 -0.27 1.00 16 10 O -0.27 -3.81 10.41 -40.04 -0.42 -4.23 16 11 C 0.06 0.73 3.95 -26.98 -0.11 0.62 16 12 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.52 7.46 5.48 -10.98 -0.06 7.40 16 14 O -0.52 -9.87 16.57 -13.51 -0.22 -10.10 16 15 N -0.72 -9.15 4.66 -60.29 -0.28 -9.43 16 16 C 0.11 1.84 5.79 -4.04 -0.02 1.82 16 17 C 0.15 2.72 6.37 -4.04 -0.03 2.70 16 18 N -0.73 -18.19 5.60 -59.90 -0.34 -18.53 16 19 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.83 6.39 -51.93 -0.33 0.49 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.40 3.77 8.47 -40.82 -0.35 3.43 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.39 10.25 7.67 -40.82 -0.31 9.94 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -34.39 339.19 -8.98 -43.37 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.61 Total: 7.58 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.93 Total: -3.51 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.11 Total: -55.30 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.64 Total: -14.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.39 -8.98 -43.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153641664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.787 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds