Wall clock time and date at job start Tue Mar 31 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.86499 * 2 1 4 4 C 1.51642 * 110.94682 * 123.74665 * 2 1 3 5 5 C 1.37743 * 132.18265 * 282.45744 * 4 2 1 6 6 C 1.38344 * 119.97842 * 180.34149 * 5 4 2 7 7 C 1.38289 * 119.77022 * 359.97438 * 6 5 4 8 8 C 1.37932 * 120.34860 * 359.85231 * 7 6 5 9 9 C 1.38890 * 107.03111 * 102.47802 * 4 2 1 10 10 O 1.36385 * 111.33653 * 359.50321 * 9 4 2 11 11 C 1.43761 * 109.14020 * 18.36403 * 10 9 4 12 12 H 1.08998 * 110.75341 * 91.09389 * 11 10 9 13 13 C 1.50700 * 110.74371 * 214.25536 * 11 10 9 14 14 O 1.21283 * 120.00275 * 1.08396 * 13 11 10 15 15 N 1.34777 * 120.00075 * 181.08297 * 13 11 10 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47198 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.47198 * 179.97438 * 17 16 15 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 16 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47080 * 120.00466 * 23 21 19 26 26 H 1.48506 * 109.47018 * 240.00565 * 23 21 19 27 27 H 1.09004 * 109.47139 * 183.73546 * 1 2 3 28 28 H 1.08999 * 109.46854 * 303.73345 * 1 2 3 29 29 H 1.08997 * 109.47507 * 63.73038 * 1 2 3 30 30 H 1.07999 * 120.00569 * 0.34746 * 5 4 2 31 31 H 1.07996 * 120.11676 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.82850 * 179.83352 * 7 6 5 33 33 H 1.07997 * 119.88015 * 180.02562 * 8 7 6 34 34 H 0.97000 * 119.99549 * 0.02562 * 15 13 11 35 35 H 1.08995 * 109.47424 * 60.00473 * 16 15 13 36 36 H 1.09006 * 109.46868 * 300.00024 * 16 15 13 37 37 H 1.09009 * 109.46730 * 59.99787 * 17 16 15 38 38 H 1.08998 * 109.46846 * 300.00332 * 17 16 15 39 39 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 40 40 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0721 -0.7867 1.1776 5 6 2.1971 -0.4816 2.5150 6 6 2.7460 -1.4054 3.3864 7 6 3.1668 -2.6334 2.9096 8 6 3.0392 -2.9424 1.5714 9 6 2.4855 -2.0189 0.6879 10 8 2.2640 -2.1192 -0.6541 11 6 2.0829 -0.8024 -1.2017 12 1 3.0342 -0.3893 -1.5370 13 6 1.0860 -0.8266 -2.3316 14 8 0.5484 -1.8680 -2.6439 15 7 0.7917 0.3090 -2.9951 16 6 -0.1778 0.2855 -4.0931 17 6 -0.3274 1.6941 -4.6716 18 7 -1.2965 1.6705 -5.7701 19 6 -1.5907 2.8232 -6.4483 20 1 -1.1117 3.7504 -6.1706 21 6 -2.5046 2.7998 -7.4929 22 7 -3.0887 1.6697 -7.8311 23 14 -2.9066 4.3722 -8.4176 24 1 -2.1222 5.4965 -7.8467 25 1 -2.5598 4.2054 -9.8519 26 1 -4.3569 4.6647 -8.2898 27 1 -0.3633 -1.0255 0.0670 28 1 -0.3633 0.5707 0.8546 29 1 -0.3634 0.4548 -0.9215 30 1 1.8667 0.4784 2.8831 31 1 2.8454 -1.1683 4.4353 32 1 3.5978 -3.3542 3.5886 33 1 3.3700 -3.9038 1.2074 34 1 1.2219 1.1418 -2.7456 35 1 -1.1421 -0.0582 -3.7191 36 1 0.1721 -0.3917 -4.8724 37 1 0.6372 2.0375 -5.0458 38 1 -0.6769 2.3715 -3.8926 39 1 -1.7264 0.8376 -6.0197 40 1 -3.7275 1.6535 -8.5608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153641664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:12 Heat of formation + Delta-G solvation = -48.916399 kcal Electronic energy + Delta-G solvation = -22271.511346 eV Core-core repulsion = 18858.119779 eV Total energy + Delta-G solvation = -3413.391567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.65007 -40.52494 -38.30696 -37.30715 -35.74596 -34.96322 -33.15531 -31.23859 -31.05471 -29.53801 -28.12455 -25.74241 -24.55865 -23.33120 -23.00916 -22.13822 -21.40789 -19.37035 -18.48286 -18.28906 -18.01505 -17.38364 -16.86599 -16.48640 -16.40519 -15.83300 -15.37030 -15.16193 -15.04362 -14.91029 -14.63211 -14.32547 -14.19740 -13.99842 -13.75700 -13.16031 -13.07343 -13.04004 -12.71004 -12.60286 -12.50911 -12.35210 -12.04279 -12.00403 -11.85584 -11.63081 -11.03463 -11.00558 -10.25330 -9.86274 -9.17397 -9.06482 -7.96938 -5.28287 0.31635 0.40764 1.34335 1.47993 1.50282 1.53541 1.60609 2.42853 2.58156 2.77019 3.15007 3.32063 3.37881 3.64896 3.83460 3.92886 3.99077 4.15345 4.19643 4.20020 4.23805 4.33853 4.45305 4.53672 4.57645 4.61657 4.69317 4.87067 4.97948 5.08134 5.12979 5.15761 5.27279 5.38000 5.45675 5.49478 5.55544 5.64004 6.15806 6.24006 6.39190 7.05534 7.30173 8.02209 8.24325 9.27028 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045492 B = 0.002567 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.346051 B =10902.995629 C =11252.772995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 H 0.146 0.854 4 C -0.175 4.175 5 C -0.068 4.068 6 C -0.146 4.146 7 C -0.084 4.084 8 C -0.154 4.154 9 C 0.070 3.930 10 O -0.309 6.309 11 C 0.064 3.936 12 H 0.145 0.855 13 C 0.522 3.478 14 O -0.572 6.572 15 N -0.698 5.698 16 C 0.128 3.872 17 C 0.150 3.850 18 N -0.748 5.748 19 C -0.244 4.244 20 H 0.086 0.914 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.979 3.021 24 H -0.260 1.260 25 H -0.295 1.295 26 H -0.294 1.294 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.129 0.871 34 H 0.421 0.579 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.373 0.627 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.970 -1.771 25.897 30.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 H 0.163 0.837 4 C -0.176 4.176 5 C -0.086 4.086 6 C -0.164 4.164 7 C -0.102 4.102 8 C -0.173 4.173 9 C 0.026 3.974 10 O -0.223 6.223 11 C 0.005 3.995 12 H 0.162 0.838 13 C 0.308 3.692 14 O -0.451 6.451 15 N -0.353 5.353 16 C 0.004 3.996 17 C 0.023 3.977 18 N -0.392 5.392 19 C -0.375 4.375 20 H 0.103 0.897 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.808 3.192 24 H -0.184 1.184 25 H -0.222 1.222 26 H -0.222 1.222 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.169 0.831 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.147 0.853 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.205 0.795 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.602 -2.510 25.492 29.993 hybrid contribution -0.624 0.270 -1.185 1.366 sum 14.978 -2.240 24.307 28.639 Atomic orbital electron populations 1.21884 0.93280 1.01494 1.03885 1.21368 0.96697 1.01112 0.88468 0.83673 1.20838 1.04570 0.95849 0.96348 1.20679 0.96976 1.00907 0.90060 1.21480 1.00347 0.93468 1.01120 1.21259 0.97699 0.97819 0.93399 1.20570 1.03561 0.99893 0.93276 1.20071 0.97366 0.96637 0.83352 1.86959 1.87039 1.28871 1.19462 1.23456 0.99715 0.82835 0.93506 0.83788 1.20427 0.82411 0.83521 0.82888 1.90745 1.53714 1.32813 1.67794 1.45524 1.44330 1.11037 1.34387 1.21194 0.91939 0.98028 0.88441 1.20857 0.93171 0.93461 0.90198 1.42453 1.49884 1.08790 1.38055 1.19691 1.18759 0.89131 1.09960 0.89664 1.25686 1.00292 1.00307 1.00878 1.69850 1.33034 1.26932 1.32437 0.84995 0.77288 0.79148 0.77817 1.18414 1.22221 1.22156 0.95123 0.89136 0.91552 0.83086 0.82419 0.82428 0.85319 0.74048 0.92691 0.92863 0.94168 0.93900 0.79540 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.42 71.98 0.61 -2.33 16 2 C -0.06 -0.96 3.63 -10.66 -0.04 -1.00 16 3 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.18 -3.21 5.63 -19.52 -0.11 -3.32 16 5 C -0.07 -0.90 10.03 22.18 0.22 -0.68 16 6 C -0.15 -1.65 10.07 22.31 0.22 -1.43 16 7 C -0.08 -1.10 10.02 22.21 0.22 -0.88 16 8 C -0.15 -2.97 10.06 22.45 0.23 -2.75 16 9 C 0.07 1.65 7.04 22.68 0.16 1.81 16 10 O -0.31 -8.93 10.41 -79.75 -0.83 -9.76 16 11 C 0.06 1.41 3.95 30.43 0.12 1.53 16 12 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 13 C 0.52 15.07 5.48 87.66 0.48 15.55 16 14 O -0.57 -23.09 16.57 15.19 0.25 -22.84 16 15 N -0.70 -17.17 4.66 -463.05 -2.16 -19.32 16 16 C 0.13 4.26 5.79 86.38 0.50 4.76 16 17 C 0.15 5.43 6.37 86.38 0.55 5.98 16 18 N -0.75 -37.34 5.60 -343.44 -1.92 -39.27 16 19 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 20 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -59.89 13.06 21.65 0.28 -59.60 16 23 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.40 6.39 -2.39 -0.02 1.39 16 30 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 31 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.42 6.85 8.47 -92.71 -0.79 6.06 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.37 20.34 7.67 -92.71 -0.71 19.63 16 40 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -77.57 339.19 1.69 -75.88 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.43 Total: 26.76 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.47 Total: 0.77 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -3.80 Total: -118.20 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.58 Total: -32.61 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -77.57 1.69 -75.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153641664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.966 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds