Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.86172 * 2 1 4 4 C 1.52142 * 110.99337 * 236.02269 * 2 1 3 5 5 C 1.37738 * 132.13640 * 77.79662 * 4 2 1 6 6 C 1.38346 * 119.97946 * 179.05102 * 5 4 2 7 7 C 1.38285 * 119.76937 * 359.97438 * 6 5 4 8 8 C 1.37939 * 120.34650 * 0.22707 * 7 6 5 9 9 C 1.38880 * 107.07602 * 257.31769 * 4 2 1 10 10 O 1.36137 * 111.23542 * 1.09477 * 9 4 2 11 11 C 1.43766 * 109.23302 * 340.94429 * 10 9 4 12 12 H 1.09002 * 110.74936 * 146.27043 * 11 10 9 13 13 C 1.50709 * 110.75079 * 269.43403 * 11 10 9 14 14 O 1.21277 * 119.99615 * 1.07853 * 13 11 10 15 15 N 1.34772 * 120.00137 * 181.08672 * 13 11 10 16 16 C 1.46499 * 120.00119 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.47313 * 179.97438 * 16 15 13 18 18 N 1.46499 * 109.46939 * 180.02562 * 17 16 15 19 19 C 1.36932 * 119.99549 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00354 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00011 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00154 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 H 1.08991 * 109.47195 * 296.27354 * 1 2 3 28 28 H 1.08999 * 109.46868 * 56.27228 * 1 2 3 29 29 H 1.08999 * 109.47098 * 176.27304 * 1 2 3 30 30 H 1.08008 * 120.01079 * 359.03132 * 5 4 2 31 31 H 1.08003 * 120.12209 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.83162 * 180.19522 * 7 6 5 33 33 H 1.08002 * 119.87737 * 179.97438 * 8 7 6 34 34 H 0.97001 * 120.00244 * 359.97438 * 15 13 11 35 35 H 1.09008 * 109.46898 * 60.00070 * 16 15 13 36 36 H 1.08994 * 109.47165 * 300.00024 * 16 15 13 37 37 H 1.09008 * 109.46680 * 60.00428 * 17 16 15 38 38 H 1.08994 * 109.47425 * 300.00356 * 17 16 15 39 39 H 0.96993 * 120.00302 * 0.02562 * 18 17 16 40 40 H 0.96998 * 119.99442 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0751 -0.7938 -1.1779 5 6 2.2046 -0.4913 -2.5154 6 6 2.7647 -1.4133 -3.3816 7 6 3.1931 -2.6364 -2.8993 8 6 3.0606 -2.9430 -1.5609 9 6 2.4933 -2.0223 -0.6832 10 8 2.2616 -2.1198 0.6547 11 6 2.0828 -0.8024 1.2017 12 1 1.3625 -0.8183 2.0197 13 6 3.3995 -0.2328 1.6636 14 8 4.4193 -0.8745 1.5262 15 7 3.4435 0.9896 2.2295 16 6 4.7233 1.5430 2.6790 17 6 4.4958 2.9321 3.2787 18 7 5.7757 3.4857 3.7276 19 6 5.8204 4.7278 4.3025 20 1 4.9121 5.2990 4.4253 21 6 7.0331 5.2522 4.7284 22 7 7.0760 6.4458 5.2813 23 14 8.6040 4.2638 4.5166 24 1 8.8271 3.4247 5.7214 25 1 9.7513 5.1897 4.3389 26 1 8.4825 3.3911 3.3213 27 1 -0.3633 0.4549 0.9214 28 1 -0.3633 0.5706 -0.8547 29 1 -0.3633 -1.0255 -0.0668 30 1 1.8687 0.4652 -2.8879 31 1 2.8669 -1.1787 -4.4309 32 1 3.6334 -3.3556 -3.5740 33 1 3.3975 -3.9007 -1.1925 34 1 2.6278 1.5030 2.3391 35 1 5.4035 1.6208 1.8307 36 1 5.1574 0.8876 3.4339 37 1 3.8155 2.8546 4.1269 38 1 4.0618 3.5873 2.5235 39 1 6.5914 2.9725 3.6177 40 1 7.9234 6.8120 5.5793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153641666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -25.202400 kcal Electronic energy + Delta-G solvation = -22439.823379 eV Core-core repulsion = 19027.460128 eV Total energy + Delta-G solvation = -3412.363251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86865 -39.30415 -37.53033 -35.89058 -34.54413 -33.82673 -31.52082 -30.52091 -30.15874 -28.77595 -27.11176 -24.02058 -23.24228 -22.46097 -21.56889 -21.25020 -20.65090 -18.23216 -17.55483 -17.32762 -17.09175 -16.14883 -15.67261 -15.27316 -15.03226 -14.51334 -14.26336 -14.07236 -14.00451 -13.78298 -13.64930 -13.39961 -13.09287 -12.83452 -12.67305 -12.42593 -11.87459 -11.78236 -11.68404 -11.55809 -11.43335 -11.02418 -10.94315 -10.88086 -10.19543 -9.91651 -9.65759 -9.17063 -9.12737 -8.95025 -8.38757 -7.34683 -5.83595 -3.21328 1.02873 1.13629 2.37354 2.71498 3.16419 3.36025 3.39796 3.43810 3.50471 3.92847 4.08666 4.41972 4.54550 4.56677 4.71372 4.81647 4.85486 5.00393 5.11232 5.16795 5.26629 5.28265 5.32895 5.39881 5.51721 5.54955 5.59781 5.73344 5.76655 5.89411 6.06411 6.15283 6.22617 6.26602 6.31303 6.52166 6.53308 6.90115 7.36954 7.89245 8.07355 8.34410 9.11803 9.84195 10.02183 11.34194 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.003085 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.765821 B = 9075.449692 C = 9373.349000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 H 0.104 0.896 4 C -0.171 4.171 5 C -0.067 4.067 6 C -0.150 4.150 7 C -0.085 4.085 8 C -0.134 4.134 9 C 0.114 3.886 10 O -0.273 6.273 11 C 0.066 3.934 12 H 0.143 0.857 13 C 0.495 3.505 14 O -0.520 6.520 15 N -0.717 5.717 16 C 0.107 3.893 17 C 0.149 3.851 18 N -0.752 5.752 19 C -0.250 4.250 20 H 0.092 0.908 21 C 0.008 3.992 22 N -0.931 5.931 23 Si 0.884 3.116 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.276 1.276 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.402 0.598 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.363 0.637 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.645 -17.113 -15.851 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 H 0.122 0.878 4 C -0.171 4.171 5 C -0.085 4.085 6 C -0.168 4.168 7 C -0.103 4.103 8 C -0.152 4.152 9 C 0.069 3.931 10 O -0.185 6.185 11 C 0.006 3.994 12 H 0.160 0.840 13 C 0.279 3.721 14 O -0.395 6.395 15 N -0.370 5.370 16 C -0.016 4.016 17 C 0.021 3.979 18 N -0.399 5.399 19 C -0.380 4.380 20 H 0.109 0.891 21 C -0.188 4.188 22 N -0.578 5.578 23 Si 0.714 3.286 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.202 1.202 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.236 0.764 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.196 0.804 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.968 -17.555 -15.698 27.905 hybrid contribution 0.896 -0.146 0.044 0.909 sum -14.072 -17.701 -15.654 27.503 Atomic orbital electron populations 1.21768 0.91836 1.02989 1.03003 1.21442 0.97553 0.99852 0.90008 0.87811 1.20774 1.04610 0.96407 0.95348 1.20294 0.97711 0.99428 0.91027 1.21036 1.01835 0.94166 0.99792 1.20890 0.98295 0.96970 0.94152 1.20291 1.02208 1.00270 0.92464 1.19552 0.94787 0.95024 0.83770 1.86926 1.85999 1.26817 1.18786 1.23417 0.95285 0.82386 0.98311 0.84007 1.20776 0.91001 0.81874 0.78495 1.90753 1.35142 1.59172 1.54428 1.45810 1.11635 1.17693 1.61895 1.21643 0.84526 0.95790 0.99655 1.20726 0.90233 0.90156 0.96743 1.42529 1.03336 1.19403 1.74623 1.18999 0.95677 0.91549 1.31743 0.89061 1.24672 0.97353 0.96481 1.00333 1.69699 1.25603 1.16598 1.45947 0.86552 0.84308 0.79643 0.78077 1.20871 1.21528 1.20197 0.91229 0.91283 0.91845 0.85712 0.85433 0.85134 0.85373 0.76381 0.91262 0.91152 0.94802 0.94910 0.80364 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.25 37.16 0.34 -0.52 16 2 C -0.07 -0.61 3.28 -90.16 -0.30 -0.91 16 3 H 0.10 0.85 7.85 -51.93 -0.41 0.44 16 4 C -0.17 -1.86 5.64 -103.85 -0.59 -2.45 16 5 C -0.07 -0.63 10.03 -39.72 -0.40 -1.03 16 6 C -0.15 -1.32 10.07 -39.52 -0.40 -1.72 16 7 C -0.09 -0.78 10.02 -39.67 -0.40 -1.18 16 8 C -0.13 -1.50 10.06 -39.30 -0.40 -1.90 16 9 C 0.11 1.44 6.86 -38.96 -0.27 1.17 16 10 O -0.27 -3.62 10.42 -39.24 -0.41 -4.03 16 11 C 0.07 0.70 3.64 -26.98 -0.10 0.60 16 12 H 0.14 1.02 7.92 -51.93 -0.41 0.61 16 13 C 0.49 6.90 7.04 -10.98 -0.08 6.83 16 14 O -0.52 -9.74 16.49 -13.50 -0.22 -9.96 16 15 N -0.72 -8.88 5.48 -60.29 -0.33 -9.21 16 16 C 0.11 1.70 5.79 -4.04 -0.02 1.68 16 17 C 0.15 2.70 6.37 -4.04 -0.03 2.67 16 18 N -0.75 -17.71 5.41 -59.91 -0.32 -18.03 16 19 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 20 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 21 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 23 Si 0.88 22.14 27.73 -169.99 -4.71 17.42 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.40 3.60 8.47 -40.82 -0.35 3.26 16 35 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -35.73 339.64 -8.61 -44.34 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.63 Total: 6.40 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.87 Total: -3.79 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.12 Total: -55.50 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.63 Total: -13.99 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.73 -8.61 -44.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153641666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.142 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds