Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.86172 * 2 1 4 4 C 1.52142 * 110.99337 * 236.02269 * 2 1 3 5 5 C 1.37738 * 132.13640 * 77.79662 * 4 2 1 6 6 C 1.38346 * 119.97946 * 179.05102 * 5 4 2 7 7 C 1.38285 * 119.76937 * 359.97438 * 6 5 4 8 8 C 1.37939 * 120.34650 * 0.22707 * 7 6 5 9 9 C 1.38880 * 107.07602 * 257.31769 * 4 2 1 10 10 O 1.36137 * 111.23542 * 1.09477 * 9 4 2 11 11 C 1.43766 * 109.23302 * 340.94429 * 10 9 4 12 12 H 1.09002 * 110.74936 * 146.27043 * 11 10 9 13 13 C 1.50709 * 110.75079 * 269.43403 * 11 10 9 14 14 O 1.21277 * 119.99615 * 1.07853 * 13 11 10 15 15 N 1.34772 * 120.00137 * 181.08672 * 13 11 10 16 16 C 1.46499 * 120.00119 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.47313 * 179.97438 * 16 15 13 18 18 N 1.46499 * 109.46939 * 180.02562 * 17 16 15 19 19 C 1.36932 * 119.99549 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00354 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00011 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00154 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 H 1.08991 * 109.47195 * 296.27354 * 1 2 3 28 28 H 1.08999 * 109.46868 * 56.27228 * 1 2 3 29 29 H 1.08999 * 109.47098 * 176.27304 * 1 2 3 30 30 H 1.08008 * 120.01079 * 359.03132 * 5 4 2 31 31 H 1.08003 * 120.12209 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.83162 * 180.19522 * 7 6 5 33 33 H 1.08002 * 119.87737 * 179.97438 * 8 7 6 34 34 H 0.97001 * 120.00244 * 359.97438 * 15 13 11 35 35 H 1.09008 * 109.46898 * 60.00070 * 16 15 13 36 36 H 1.08994 * 109.47165 * 300.00024 * 16 15 13 37 37 H 1.09008 * 109.46680 * 60.00428 * 17 16 15 38 38 H 1.08994 * 109.47425 * 300.00356 * 17 16 15 39 39 H 0.96993 * 120.00302 * 0.02562 * 18 17 16 40 40 H 0.96998 * 119.99442 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0751 -0.7938 -1.1779 5 6 2.2046 -0.4913 -2.5154 6 6 2.7647 -1.4133 -3.3816 7 6 3.1931 -2.6364 -2.8993 8 6 3.0606 -2.9430 -1.5609 9 6 2.4933 -2.0223 -0.6832 10 8 2.2616 -2.1198 0.6547 11 6 2.0828 -0.8024 1.2017 12 1 1.3625 -0.8183 2.0197 13 6 3.3995 -0.2328 1.6636 14 8 4.4193 -0.8745 1.5262 15 7 3.4435 0.9896 2.2295 16 6 4.7233 1.5430 2.6790 17 6 4.4958 2.9321 3.2787 18 7 5.7757 3.4857 3.7276 19 6 5.8204 4.7278 4.3025 20 1 4.9121 5.2990 4.4253 21 6 7.0331 5.2522 4.7284 22 7 7.0760 6.4458 5.2813 23 14 8.6040 4.2638 4.5166 24 1 8.8271 3.4247 5.7214 25 1 9.7513 5.1897 4.3389 26 1 8.4825 3.3911 3.3213 27 1 -0.3633 0.4549 0.9214 28 1 -0.3633 0.5706 -0.8547 29 1 -0.3633 -1.0255 -0.0668 30 1 1.8687 0.4652 -2.8879 31 1 2.8669 -1.1787 -4.4309 32 1 3.6334 -3.3556 -3.5740 33 1 3.3975 -3.9007 -1.1925 34 1 2.6278 1.5030 2.3391 35 1 5.4035 1.6208 1.8307 36 1 5.1574 0.8876 3.4339 37 1 3.8155 2.8546 4.1269 38 1 4.0618 3.5873 2.5235 39 1 6.5914 2.9725 3.6177 40 1 7.9234 6.8120 5.5793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153641666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = -50.033532 kcal Electronic energy + Delta-G solvation = -22440.900138 eV Core-core repulsion = 19027.460128 eV Total energy + Delta-G solvation = -3413.440010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69547 -40.38410 -38.33673 -37.43923 -35.75310 -34.93932 -33.46930 -31.24179 -31.08468 -30.00163 -28.13697 -25.37679 -24.36155 -23.37182 -23.09202 -21.97512 -21.72517 -19.92184 -18.90531 -18.12281 -17.98148 -17.02088 -16.93791 -16.43329 -16.27752 -15.99370 -15.60132 -15.23600 -15.13664 -14.77544 -14.69828 -14.54612 -14.07944 -13.76420 -13.60513 -13.46745 -13.22351 -13.02449 -12.74694 -12.70741 -12.64342 -12.38686 -12.10766 -12.09830 -11.84228 -11.65184 -11.05042 -10.99683 -10.28481 -9.88105 -9.37611 -9.18211 -8.06356 -5.41533 0.29627 0.37105 1.32971 1.38253 1.39453 1.46514 1.74965 2.27061 2.45475 2.76393 3.21516 3.25743 3.34537 3.49233 3.78791 3.86821 3.94225 4.04694 4.15586 4.18532 4.21852 4.37898 4.47325 4.51502 4.53245 4.60179 4.86555 4.95292 4.98189 5.06999 5.07579 5.24359 5.30323 5.34931 5.42196 5.51865 5.59777 5.71702 6.13195 6.16774 6.37904 7.01457 7.05039 7.76815 7.93597 9.14431 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.003085 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.765821 B = 9075.449692 C = 9373.349000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 H 0.112 0.888 4 C -0.183 4.183 5 C -0.076 4.076 6 C -0.150 4.150 7 C -0.089 4.089 8 C -0.157 4.157 9 C 0.077 3.923 10 O -0.296 6.296 11 C 0.067 3.933 12 H 0.178 0.822 13 C 0.494 3.506 14 O -0.574 6.574 15 N -0.700 5.700 16 C 0.122 3.878 17 C 0.151 3.849 18 N -0.760 5.760 19 C -0.237 4.237 20 H 0.066 0.934 21 C -0.058 4.058 22 N -0.979 5.979 23 Si 0.950 3.050 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.256 1.256 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.422 0.578 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.366 0.634 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 -17.769 -17.361 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.081 4.081 3 H 0.130 0.870 4 C -0.184 4.184 5 C -0.094 4.094 6 C -0.168 4.168 7 C -0.107 4.107 8 C -0.175 4.175 9 C 0.032 3.968 10 O -0.209 6.209 11 C 0.008 3.992 12 H 0.195 0.805 13 C 0.280 3.720 14 O -0.453 6.453 15 N -0.355 5.355 16 C -0.003 4.003 17 C 0.025 3.975 18 N -0.407 5.407 19 C -0.367 4.367 20 H 0.084 0.916 21 C -0.251 4.251 22 N -0.630 5.630 23 Si 0.777 3.223 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.181 1.181 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.145 0.855 34 H 0.259 0.741 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.198 0.802 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.193 -18.232 -17.233 29.859 hybrid contribution 1.155 0.049 0.454 1.242 sum -15.038 -18.183 -16.779 28.953 Atomic orbital electron populations 1.21767 0.89617 1.02910 1.04703 1.21510 0.99145 0.99372 0.88052 0.87024 1.21136 1.04567 0.96147 0.96514 1.20678 0.97495 1.00567 0.90682 1.21461 1.00503 0.93636 1.01152 1.21244 0.97893 0.97884 0.93650 1.20598 1.02868 1.00505 0.93562 1.19927 0.96569 0.96480 0.83817 1.86884 1.86308 1.28250 1.19483 1.23669 0.93661 0.81831 1.00047 0.80512 1.21484 0.91730 0.81466 0.77366 1.90727 1.37325 1.60616 1.56609 1.45583 1.11296 1.17519 1.61064 1.21259 0.85867 0.94348 0.98791 1.20839 0.88103 0.91221 0.97364 1.42572 1.05497 1.18118 1.74467 1.19015 0.94653 0.92669 1.30391 0.91569 1.25456 1.00933 0.97661 1.01006 1.69860 1.26334 1.18697 1.48064 0.85489 0.79760 0.78244 0.78789 1.20418 1.21981 1.18070 0.88914 0.90291 0.92710 0.83488 0.82659 0.82626 0.85466 0.74054 0.92434 0.92113 0.93615 0.93736 0.80153 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.25 71.98 0.67 -0.59 16 2 C -0.06 -0.95 3.28 -10.49 -0.03 -0.98 16 3 H 0.11 1.51 7.85 -2.39 -0.02 1.49 16 4 C -0.18 -3.76 5.64 -19.37 -0.11 -3.87 16 5 C -0.08 -1.30 10.03 22.18 0.22 -1.08 16 6 C -0.15 -2.32 10.07 22.31 0.22 -2.09 16 7 C -0.09 -1.53 10.02 22.21 0.22 -1.31 16 8 C -0.16 -3.56 10.06 22.45 0.23 -3.33 16 9 C 0.08 1.94 6.86 22.68 0.16 2.09 16 10 O -0.30 -7.85 10.42 -76.88 -0.80 -8.65 16 11 C 0.07 1.32 3.64 30.43 0.11 1.43 16 12 H 0.18 2.06 7.92 -2.39 -0.02 2.04 16 13 C 0.49 13.24 7.04 87.66 0.62 13.85 16 14 O -0.57 -21.65 16.49 15.21 0.25 -21.40 16 15 N -0.70 -15.93 5.48 -463.05 -2.54 -18.47 16 16 C 0.12 3.67 5.79 86.38 0.50 4.17 16 17 C 0.15 5.17 6.37 86.38 0.55 5.72 16 18 N -0.76 -34.71 5.41 -343.44 -1.86 -36.57 16 19 C -0.24 -13.19 10.47 84.04 0.88 -12.31 16 20 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 21 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 22 N -0.98 -62.01 13.97 21.65 0.30 -61.70 16 23 Si 0.95 45.53 27.73 68.60 1.90 47.43 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 26 H -0.26 -11.27 6.52 99.48 0.65 -10.63 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.42 6.26 8.47 -92.71 -0.79 5.47 16 35 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.37 16.34 5.53 -92.71 -0.51 15.83 16 40 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -79.13 339.64 1.66 -77.47 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.30 Total: 23.14 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 4.70 Total: -1.25 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -4.09 Total: -116.74 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.55 Total: -30.05 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Total: -79.13 1.66 -77.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153641666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.435 kcal (2) G-P(sol) polarization free energy of solvation -79.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds