Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42896 * 109.47216 * 264.16606 * 3 2 1 5 5 C 1.42908 * 113.99858 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46991 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47423 * 64.99710 * 6 5 4 8 8 C 1.42894 * 114.00523 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47684 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.47144 * 64.99756 * 9 8 7 11 11 C 1.39081 * 120.00235 * 180.02562 * 10 9 8 12 12 C 1.38745 * 119.65654 * 0.02562 * 11 10 9 13 13 C 1.40780 * 118.66766 * 180.25603 * 12 11 10 14 14 C 1.41556 * 120.99320 * 179.73075 * 13 12 11 15 15 H 1.08000 * 119.99885 * 23.25054 * 14 13 12 16 16 C 1.40023 * 120.00133 * 203.25381 * 14 13 12 17 17 N 1.30749 * 119.99608 * 17.06231 * 16 14 13 18 18 Si 1.86799 * 120.00303 * 197.05828 * 16 14 13 19 19 H 1.48501 * 109.47229 * 94.64674 * 18 16 14 20 20 H 1.48497 * 109.47198 * 214.65577 * 18 16 14 21 21 H 1.48502 * 109.46720 * 334.65245 * 18 16 14 22 22 C 1.41183 * 118.01505 * 359.50582 * 13 12 11 23 23 C 1.36553 * 119.14376 * 0.47561 * 22 13 12 24 24 N 1.32101 * 121.27055 * 359.76926 * 23 22 13 25 25 H 4.38440 * 5.44430 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47020 * 144.16579 * 3 2 1 27 27 H 1.08998 * 109.47527 * 24.17124 * 3 2 1 28 28 H 1.08996 * 109.47123 * 60.00140 * 5 4 3 29 29 H 1.08998 * 109.46834 * 299.99497 * 5 4 3 30 30 H 1.09003 * 109.47037 * 305.00274 * 6 5 4 31 31 H 1.08999 * 109.47117 * 184.99999 * 6 5 4 32 32 H 1.09004 * 109.47028 * 59.99805 * 8 7 6 33 33 H 1.09000 * 109.46913 * 300.00354 * 8 7 6 34 34 H 1.09009 * 109.46971 * 305.00372 * 9 8 7 35 35 H 1.08996 * 109.47646 * 185.00383 * 9 8 7 36 36 H 0.97000 * 119.99590 * 0.02562 * 10 9 8 37 37 H 1.08004 * 120.66698 * 359.97438 * 12 11 10 38 38 H 0.97001 * 119.99291 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.43179 * 180.26527 * 22 13 12 40 40 H 1.08008 * 119.36698 * 179.79149 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1378 1.3403 5 6 4.5469 0.1505 1.4524 6 6 4.9414 0.3002 2.9231 7 8 4.5151 -0.8535 3.6505 8 6 4.8369 -0.8150 5.0422 9 6 4.3367 -2.0937 5.7170 10 7 5.0667 -3.2458 5.1823 11 6 4.7831 -4.5256 5.6470 12 6 3.8069 -4.7031 6.6168 13 6 3.5404 -6.0069 7.0761 14 6 2.5589 -6.2439 8.0683 15 1 1.7603 -5.5325 8.2185 16 6 2.6235 -7.4004 8.8549 17 7 3.7353 -8.0855 8.9199 18 14 1.1216 -7.9645 9.8116 19 1 0.3739 -8.9684 9.0125 20 1 1.5525 -8.5746 11.0950 21 1 0.2441 -6.7987 10.0877 22 6 4.2779 -7.0716 6.5142 23 6 5.2194 -6.7995 5.5633 24 7 5.4477 -5.5629 5.1586 25 1 -1.0500 0.0002 0.0000 26 1 3.0090 0.8340 -0.6017 27 1 3.0098 -0.9367 -0.4208 28 1 4.9489 0.9871 0.8810 29 1 4.9504 -0.7837 1.0617 30 1 4.4647 1.1881 3.3385 31 1 6.0241 0.3991 3.0006 32 1 4.3585 0.0499 5.5019 33 1 5.9175 -0.7395 5.1633 34 1 3.2714 -2.2155 5.5204 35 1 4.5022 -2.0258 6.7922 36 1 5.7480 -3.1160 4.5041 37 1 3.2655 -3.8575 7.0147 38 1 3.7801 -8.8866 9.4651 39 1 4.1023 -8.0879 6.8348 40 1 5.7881 -7.6109 5.1335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160673314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -3.982928 kcal Electronic energy + Delta-G solvation = -21502.497384 eV Core-core repulsion = 18091.054278 eV Total energy + Delta-G solvation = -3411.443106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.82158 -38.35334 -37.55362 -35.00802 -33.79232 -33.45151 -30.81057 -30.49985 -29.11358 -27.03967 -26.67279 -25.80809 -22.77803 -22.69986 -21.02499 -20.52298 -18.68888 -17.65064 -17.24880 -17.04810 -15.97776 -15.85091 -15.72857 -15.39024 -14.94141 -14.62404 -14.04316 -13.88348 -13.67032 -13.29088 -13.03714 -12.85748 -12.54586 -12.28599 -11.99493 -11.90997 -11.44192 -11.32567 -11.17854 -11.04186 -10.78844 -10.73037 -10.68170 -10.21831 -9.81108 -9.75849 -9.65280 -9.36230 -8.84449 -7.88563 -7.82075 -6.77406 -6.35484 -4.48991 2.28059 2.58870 2.84937 3.07568 3.11857 3.14935 3.42522 3.55845 3.66684 3.92634 4.17284 4.28162 4.76020 4.77872 4.92032 4.96683 5.04267 5.12927 5.22733 5.27938 5.29399 5.41926 5.52835 5.68413 5.84688 6.00485 6.11602 6.25288 6.85001 6.86314 6.98053 7.02965 7.07387 7.17076 7.35007 7.35157 7.64067 7.91586 8.13186 8.20587 8.52918 8.80581 8.90907 8.99099 9.87177 10.17367 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.002858 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.568785 B = 9793.277964 C =10520.110135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.193 4.193 3 C 0.172 3.828 4 O -0.373 6.373 5 C 0.064 3.936 6 C 0.063 3.937 7 O -0.372 6.372 8 C 0.053 3.947 9 C 0.144 3.856 10 N -0.739 5.739 11 C 0.399 3.601 12 C -0.336 4.336 13 C 0.156 3.844 14 C -0.457 4.457 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.785 5.785 18 Si 0.910 3.090 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.247 4.247 23 C 0.116 3.884 24 N -0.625 5.625 25 H 0.222 0.778 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.391 0.609 37 H 0.096 0.904 38 H 0.281 0.719 39 H 0.123 0.877 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 15.369 -11.463 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C 0.096 3.904 4 O -0.292 6.292 5 C -0.012 4.012 6 C -0.014 4.014 7 O -0.291 6.291 8 C -0.024 4.024 9 C 0.018 3.982 10 N -0.376 5.376 11 C 0.168 3.832 12 C -0.363 4.363 13 C 0.148 3.852 14 C -0.488 4.488 15 H 0.097 0.903 16 C -0.140 4.140 17 N -0.410 5.410 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.272 4.272 23 C -0.033 4.033 24 N -0.348 5.348 25 H 0.238 0.762 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.225 0.775 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.467 15.259 -11.792 19.290 hybrid contribution -0.881 -0.227 0.839 1.237 sum -0.413 15.032 -10.953 18.604 Atomic orbital electron populations 1.24983 0.95923 1.00733 0.97522 1.22533 0.93943 1.00710 1.02163 1.19061 0.84889 1.01254 0.85152 1.88052 1.21082 1.94705 1.25404 1.22574 0.81337 1.01325 0.95964 1.22477 0.98256 0.89631 0.91033 1.88072 1.80849 1.40163 1.20002 1.22795 0.99350 0.98253 0.81966 1.21102 0.96998 0.83398 0.96656 1.43984 1.44278 1.02523 1.46842 1.17940 0.90605 0.84589 0.90018 1.21126 1.08255 0.97315 1.09635 1.17598 0.89076 0.89889 0.88633 1.19597 1.09764 1.04662 1.14826 0.90282 1.25961 0.96561 0.95442 0.96082 1.69820 1.25387 1.14199 1.31631 0.86272 0.81789 0.79704 0.78784 1.19255 1.20250 1.18505 1.21768 1.03090 1.00449 1.01869 1.21349 0.95709 0.91660 0.94631 1.66743 1.33976 0.99125 1.34998 0.76151 0.91057 0.90684 0.91672 0.91841 0.92561 0.91692 0.92131 0.92883 0.91908 0.91285 0.77521 0.88545 0.90817 0.85971 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 19.25 29.55 0.57 -1.19 16 2 C -0.19 -2.23 13.73 -37.12 -0.51 -2.74 16 3 C 0.17 1.69 6.41 34.37 0.22 1.91 16 4 O -0.37 -4.63 10.27 -40.08 -0.41 -5.04 16 5 C 0.06 0.60 6.32 37.16 0.23 0.84 16 6 C 0.06 0.63 6.32 37.16 0.23 0.86 16 7 O -0.37 -5.21 10.25 -40.08 -0.41 -5.62 16 8 C 0.05 0.67 6.07 37.15 0.23 0.89 16 9 C 0.14 2.35 5.28 -4.04 -0.02 2.33 16 10 N -0.74 -14.73 5.68 -60.47 -0.34 -15.07 16 11 C 0.40 9.84 7.65 -154.98 -1.19 8.66 16 12 C -0.34 -8.74 9.12 -38.43 -0.35 -9.09 16 13 C 0.16 4.35 5.61 -106.55 -0.60 3.75 16 14 C -0.46 -12.41 9.12 -37.65 -0.34 -12.76 16 15 H 0.08 2.06 7.90 -52.49 -0.41 1.65 16 16 C 0.08 2.00 5.20 -17.34 -0.09 1.91 16 17 N -0.79 -20.46 10.91 55.55 0.61 -19.85 16 18 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.25 -6.72 8.74 -39.07 -0.34 -7.06 16 23 C 0.12 2.96 11.10 -18.04 -0.20 2.76 16 24 N -0.62 -16.03 10.37 -12.82 -0.13 -16.16 16 25 H 0.22 1.38 7.80 -54.09 -0.42 0.96 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.11 7.93 -51.92 -0.41 0.70 16 35 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 36 H 0.39 7.35 8.60 -40.82 -0.35 7.00 16 37 H 0.10 2.35 6.71 -52.48 -0.35 2.00 16 38 H 0.28 6.60 8.29 -40.82 -0.34 6.27 16 39 H 0.12 3.35 6.18 -52.49 -0.32 3.03 16 40 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -33.09 352.84 -8.19 -41.28 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.63 Total: 10.36 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.16 Total: -8.92 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.13 Total: -51.09 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.82 Total: -10.66 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.09 -8.19 -41.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160673314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.294 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds