Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42896 * 109.47216 * 264.16606 * 3 2 1 5 5 C 1.42908 * 113.99858 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46991 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47423 * 64.99710 * 6 5 4 8 8 C 1.42894 * 114.00523 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47684 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.47144 * 64.99756 * 9 8 7 11 11 C 1.39081 * 120.00235 * 180.02562 * 10 9 8 12 12 C 1.38745 * 119.65654 * 0.02562 * 11 10 9 13 13 C 1.40780 * 118.66766 * 180.25603 * 12 11 10 14 14 C 1.41556 * 120.99320 * 179.73075 * 13 12 11 15 15 H 1.08000 * 119.99885 * 23.25054 * 14 13 12 16 16 C 1.40023 * 120.00133 * 203.25381 * 14 13 12 17 17 N 1.30749 * 119.99608 * 17.06231 * 16 14 13 18 18 Si 1.86799 * 120.00303 * 197.05828 * 16 14 13 19 19 H 1.48501 * 109.47229 * 94.64674 * 18 16 14 20 20 H 1.48497 * 109.47198 * 214.65577 * 18 16 14 21 21 H 1.48502 * 109.46720 * 334.65245 * 18 16 14 22 22 C 1.41183 * 118.01505 * 359.50582 * 13 12 11 23 23 C 1.36553 * 119.14376 * 0.47561 * 22 13 12 24 24 N 1.32101 * 121.27055 * 359.76926 * 23 22 13 25 25 H 4.38440 * 5.44430 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47020 * 144.16579 * 3 2 1 27 27 H 1.08998 * 109.47527 * 24.17124 * 3 2 1 28 28 H 1.08996 * 109.47123 * 60.00140 * 5 4 3 29 29 H 1.08998 * 109.46834 * 299.99497 * 5 4 3 30 30 H 1.09003 * 109.47037 * 305.00274 * 6 5 4 31 31 H 1.08999 * 109.47117 * 184.99999 * 6 5 4 32 32 H 1.09004 * 109.47028 * 59.99805 * 8 7 6 33 33 H 1.09000 * 109.46913 * 300.00354 * 8 7 6 34 34 H 1.09009 * 109.46971 * 305.00372 * 9 8 7 35 35 H 1.08996 * 109.47646 * 185.00383 * 9 8 7 36 36 H 0.97000 * 119.99590 * 0.02562 * 10 9 8 37 37 H 1.08004 * 120.66698 * 359.97438 * 12 11 10 38 38 H 0.97001 * 119.99291 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.43179 * 180.26527 * 22 13 12 40 40 H 1.08008 * 119.36698 * 179.79149 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1378 1.3403 5 6 4.5469 0.1505 1.4524 6 6 4.9414 0.3002 2.9231 7 8 4.5151 -0.8535 3.6505 8 6 4.8369 -0.8150 5.0422 9 6 4.3367 -2.0937 5.7170 10 7 5.0667 -3.2458 5.1823 11 6 4.7831 -4.5256 5.6470 12 6 3.8069 -4.7031 6.6168 13 6 3.5404 -6.0069 7.0761 14 6 2.5589 -6.2439 8.0683 15 1 1.7603 -5.5325 8.2185 16 6 2.6235 -7.4004 8.8549 17 7 3.7353 -8.0855 8.9199 18 14 1.1216 -7.9645 9.8116 19 1 0.3739 -8.9684 9.0125 20 1 1.5525 -8.5746 11.0950 21 1 0.2441 -6.7987 10.0877 22 6 4.2779 -7.0716 6.5142 23 6 5.2194 -6.7995 5.5633 24 7 5.4477 -5.5629 5.1586 25 1 -1.0500 0.0002 0.0000 26 1 3.0090 0.8340 -0.6017 27 1 3.0098 -0.9367 -0.4208 28 1 4.9489 0.9871 0.8810 29 1 4.9504 -0.7837 1.0617 30 1 4.4647 1.1881 3.3385 31 1 6.0241 0.3991 3.0006 32 1 4.3585 0.0499 5.5019 33 1 5.9175 -0.7395 5.1633 34 1 3.2714 -2.2155 5.5204 35 1 4.5022 -2.0258 6.7922 36 1 5.7480 -3.1160 4.5041 37 1 3.2655 -3.8575 7.0147 38 1 3.7801 -8.8866 9.4651 39 1 4.1023 -8.0879 6.8348 40 1 5.7881 -7.6109 5.1335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160673314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -25.661185 kcal Electronic energy + Delta-G solvation = -21503.437424 eV Core-core repulsion = 18091.054278 eV Total energy + Delta-G solvation = -3412.383146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34051 -39.55563 -38.54308 -36.64561 -35.60332 -34.26856 -32.56244 -31.86969 -30.39192 -28.47120 -27.81784 -27.58424 -24.19778 -23.50255 -22.92928 -22.26661 -19.52095 -19.41615 -18.10604 -17.92305 -17.71482 -17.05822 -16.75087 -16.64661 -16.21783 -16.11131 -15.78171 -15.15898 -15.07900 -14.89632 -14.40392 -14.20680 -14.03857 -13.55781 -13.33361 -13.12548 -12.95364 -12.81603 -12.66336 -12.33744 -12.08678 -11.96197 -11.73190 -11.52454 -11.47135 -11.25156 -10.65415 -10.57178 -10.51800 -9.92464 -9.83433 -8.69640 -8.20955 -6.54691 0.98315 1.20101 1.39399 1.50659 1.53739 1.61549 1.79852 2.19988 2.54765 2.72509 2.81646 2.96313 3.59625 3.83604 3.95253 4.15433 4.23571 4.25328 4.27881 4.32062 4.43524 4.47865 4.51332 4.57211 4.75303 4.81560 4.87697 4.92848 5.00884 5.01562 5.06412 5.19288 5.32441 5.63475 5.91909 6.12423 6.13487 6.30376 6.41692 6.56562 6.58006 6.87555 6.92184 7.08209 7.89944 8.27959 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.002858 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.568785 B = 9793.277964 C =10520.110135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.407 6.407 5 C 0.059 3.941 6 C 0.056 3.944 7 O -0.406 6.406 8 C 0.063 3.937 9 C 0.139 3.861 10 N -0.727 5.727 11 C 0.398 3.602 12 C -0.358 4.358 13 C 0.128 3.872 14 C -0.490 4.490 15 H 0.078 0.922 16 C 0.039 3.961 17 N -0.812 5.812 18 Si 0.989 3.011 19 H -0.261 1.261 20 H -0.264 1.264 21 H -0.258 1.258 22 C -0.273 4.273 23 C 0.117 3.883 24 N -0.636 5.636 25 H 0.251 0.749 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.398 0.602 37 H 0.103 0.897 38 H 0.292 0.708 39 H 0.113 0.887 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 16.456 -11.514 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.239 4.239 3 C 0.091 3.909 4 O -0.327 6.327 5 C -0.016 4.016 6 C -0.020 4.020 7 O -0.326 6.326 8 C -0.014 4.014 9 C 0.014 3.986 10 N -0.363 5.363 11 C 0.165 3.835 12 C -0.385 4.385 13 C 0.120 3.880 14 C -0.520 4.520 15 H 0.096 0.904 16 C -0.179 4.179 17 N -0.437 5.437 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.188 1.188 21 H -0.181 1.181 22 C -0.298 4.298 23 C -0.033 4.033 24 N -0.361 5.361 25 H 0.267 0.733 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.341 16.398 -11.866 20.244 hybrid contribution -0.800 -0.503 0.800 1.238 sum -0.459 15.895 -11.066 19.373 Atomic orbital electron populations 1.25869 0.96959 0.99653 0.96263 1.23303 0.95280 1.01880 1.03405 1.19281 0.84293 1.02652 0.84630 1.87993 1.22819 1.94965 1.26954 1.22792 0.80152 1.02552 0.96144 1.22762 0.99892 0.88441 0.90872 1.88022 1.81644 1.42344 1.20603 1.22713 1.00511 0.96496 0.81655 1.21304 0.95825 0.83992 0.97485 1.44108 1.44155 1.01761 1.46319 1.18230 0.89806 0.86067 0.89379 1.21243 1.09392 0.97067 1.10825 1.18014 0.89756 0.90879 0.89380 1.19875 1.10128 1.06218 1.15791 0.90376 1.26881 0.99673 0.94688 0.96638 1.69857 1.27283 1.14572 1.31971 0.85095 0.77320 0.79190 0.77497 1.18564 1.18813 1.18113 1.21751 1.04705 0.99931 1.03413 1.21758 0.95135 0.92568 0.93847 1.66897 1.34415 0.99385 1.35397 0.73255 0.88281 0.90261 0.88149 0.92394 0.91880 0.89055 0.89624 0.90967 0.93710 0.90786 0.76724 0.87932 0.89712 0.86949 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 19.25 74.32 1.43 -1.88 16 2 C -0.24 -5.44 13.73 31.13 0.43 -5.01 16 3 C 0.17 3.17 6.41 70.18 0.45 3.62 16 4 O -0.41 -9.82 10.27 -144.34 -1.48 -11.30 16 5 C 0.06 1.01 6.32 71.98 0.45 1.46 16 6 C 0.06 1.00 6.32 71.98 0.45 1.45 16 7 O -0.41 -10.82 10.25 -144.34 -1.48 -12.30 16 8 C 0.06 1.45 6.07 71.98 0.44 1.89 16 9 C 0.14 4.45 5.28 86.38 0.46 4.91 16 10 N -0.73 -28.72 5.68 -345.24 -1.96 -30.68 16 11 C 0.40 19.78 7.65 132.91 1.02 20.80 16 12 C -0.36 -19.09 9.12 23.01 0.21 -18.88 16 13 C 0.13 7.33 5.61 -21.12 -0.12 7.21 16 14 C -0.49 -27.19 9.12 23.52 0.21 -26.98 16 15 H 0.08 4.19 7.90 -2.91 -0.02 4.16 16 16 C 0.04 1.96 5.20 85.29 0.44 2.40 16 17 N -0.81 -42.63 10.91 21.84 0.24 -42.39 16 18 Si 0.99 38.10 29.59 68.60 2.03 40.13 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 22 C -0.27 -15.24 8.74 22.60 0.20 -15.04 16 23 C 0.12 6.00 11.10 84.26 0.94 6.94 16 24 N -0.64 -32.76 10.37 -194.47 -2.02 -34.77 16 25 H 0.25 2.71 7.80 -4.42 -0.03 2.68 16 26 H 0.10 1.23 8.14 -2.38 -0.02 1.22 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.60 7.93 -2.38 -0.02 1.59 16 35 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 36 H 0.40 14.61 8.60 -92.71 -0.80 13.81 16 37 H 0.10 5.15 6.71 -2.91 -0.02 5.13 16 38 H 0.29 13.66 8.29 -92.71 -0.77 12.89 16 39 H 0.11 6.37 6.18 -2.91 -0.02 6.35 16 40 H 0.14 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -73.05 352.84 2.58 -70.47 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: 0.24 Total: 37.96 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 7.01 Total: -17.11 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -3.74 Total: -107.84 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -2.96 Total: -23.61 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -73.05 2.58 -70.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160673314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.806 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds