Wall clock time and date at job start Tue Mar 31 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34981 * 120.00019 * 2 1 4 4 C 1.41322 * 119.99930 * 179.58919 * 3 2 1 5 5 O 1.21699 * 120.00001 * 4.76311 * 4 3 2 6 6 O 1.34968 * 119.99775 * 184.76443 * 4 3 2 7 7 C 1.42904 * 116.99812 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47052 * 150.00195 * 7 6 4 9 9 C 1.53003 * 109.46936 * 270.00325 * 7 6 4 10 10 N 1.36822 * 119.99977 * 179.97438 * 2 1 3 11 11 C 1.38338 * 119.99786 * 302.44223 * 10 2 1 12 12 N 1.32250 * 119.90116 * 354.33132 * 11 10 2 13 13 C 1.31927 * 121.87499 * 179.97438 * 12 11 10 14 14 C 1.38730 * 121.44436 * 0.02562 * 13 12 11 15 15 C 1.37967 * 119.62059 * 359.97394 * 14 13 12 16 16 C 1.41057 * 118.27160 * 0.02562 * 15 14 13 17 17 C 1.40998 * 120.70035 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99774 * 149.93757 * 17 16 15 19 19 C 1.39966 * 120.00776 * 329.93411 * 17 16 15 20 20 N 1.30848 * 120.00227 * 162.32710 * 19 17 16 21 21 Si 1.86801 * 119.99639 * 342.32656 * 19 17 16 22 22 H 1.48501 * 109.47058 * 89.96354 * 21 19 17 23 23 H 1.48494 * 109.47047 * 209.96594 * 21 19 17 24 24 H 1.48508 * 109.47003 * 329.96668 * 21 19 17 25 25 H 1.09001 * 109.47162 * 274.98097 * 1 2 3 26 26 H 1.09002 * 109.46839 * 34.98471 * 1 2 3 27 27 H 1.09001 * 109.46935 * 154.97803 * 1 2 3 28 28 H 1.08002 * 120.00013 * 359.58241 * 3 2 1 29 29 H 1.08998 * 109.47090 * 30.00409 * 7 6 4 30 30 H 1.09006 * 109.47173 * 59.99855 * 8 7 6 31 31 H 1.08997 * 109.47026 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47274 * 300.00242 * 8 7 6 33 33 H 1.08996 * 109.47119 * 60.00246 * 9 7 6 34 34 H 1.09006 * 109.46721 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.47278 * 299.99399 * 9 7 6 36 36 H 0.96995 * 120.00242 * 122.44979 * 10 2 1 37 37 H 1.08002 * 119.27762 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.19138 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.86629 * 180.02562 * 15 14 13 40 40 H 0.97003 * 119.99634 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1690 0.0000 4 6 3.5951 1.1690 0.0088 5 8 4.2041 0.1183 -0.0712 6 8 4.2693 2.3341 0.1059 7 6 5.6964 2.2595 0.1094 8 6 6.2752 3.5337 -0.5090 9 6 6.1962 2.1185 1.5486 10 7 2.1911 -1.1849 0.0005 11 6 1.9803 -2.1048 1.0120 12 7 1.2036 -1.7925 2.0359 13 6 0.9755 -2.6396 3.0211 14 6 1.5421 -3.9059 3.0326 15 6 2.3627 -4.2952 1.9941 16 6 2.5971 -3.3784 0.9480 17 6 3.4267 -3.7229 -0.1388 18 1 3.2463 -3.2935 -1.1133 19 6 4.4841 -4.6213 0.0450 20 7 5.0317 -5.2077 -0.9886 21 14 5.1137 -4.9831 1.7662 22 1 4.3650 -6.1321 2.3357 23 1 6.5595 -5.3159 1.7045 24 1 4.9169 -3.7887 2.6265 25 1 -0.3633 0.0892 1.0238 26 1 -0.3633 0.8420 -0.5892 27 1 -0.3633 -0.9312 -0.4347 28 1 1.6419 2.1043 -0.0068 29 1 6.0165 1.3954 -0.4728 30 1 5.9551 4.3979 0.0731 31 1 7.3636 3.4766 -0.5067 32 1 5.9191 3.6342 -1.5342 33 1 5.7838 1.2108 1.9890 34 1 7.2848 2.0621 1.5512 35 1 5.8762 2.9827 2.1307 36 1 2.8239 -1.3799 -0.7082 37 1 0.3343 -2.3405 3.8371 38 1 1.3413 -4.5834 3.8493 39 1 2.8140 -5.2763 1.9823 40 1 5.7643 -5.8306 -0.8611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166728775.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:51 Heat of formation + Delta-G solvation = -37.808843 kcal Electronic energy + Delta-G solvation = -23399.468760 eV Core-core repulsion = 19986.558852 eV Total energy + Delta-G solvation = -3412.909908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25146 -39.08749 -37.20565 -35.55050 -34.01449 -32.90975 -31.81334 -31.31590 -28.65612 -28.13711 -27.22318 -25.42120 -23.20978 -22.20461 -21.14127 -20.43080 -18.97577 -17.60744 -17.52015 -17.01967 -16.24098 -15.57319 -15.26762 -14.68463 -14.35638 -14.10314 -13.95426 -13.50781 -13.29900 -12.99992 -12.84969 -12.67362 -12.52118 -12.29694 -12.25027 -12.09212 -11.94389 -11.77862 -11.59194 -11.47487 -10.83142 -10.71689 -10.41434 -10.22106 -10.05548 -9.96992 -9.54783 -9.46265 -8.63106 -8.30265 -8.27412 -7.05300 -6.93104 -4.48737 1.50908 2.46250 2.66275 3.03861 3.15097 3.26911 3.32580 3.63639 3.90396 4.12432 4.50608 4.91990 5.05467 5.16261 5.29129 5.35746 5.55754 5.60344 5.68161 5.74902 5.75427 5.86127 5.91827 5.99363 6.02609 6.08889 6.24619 6.25532 6.28225 6.32920 6.47330 6.72156 6.77836 6.95484 7.07471 7.23760 7.45602 7.67274 8.00068 8.19374 8.26614 8.49522 8.55595 8.63367 9.38756 9.96168 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.006170 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.784686 B = 4537.177482 C = 5643.837583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.284 3.716 3 C -0.313 4.313 4 C 0.497 3.503 5 O -0.511 6.511 6 O -0.358 6.358 7 C 0.079 3.921 8 C -0.146 4.146 9 C -0.169 4.169 10 N -0.644 5.644 11 C 0.292 3.708 12 N -0.507 5.507 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.204 4.204 16 C 0.031 3.969 17 C -0.429 4.429 18 H 0.091 0.909 19 C 0.087 3.913 20 N -0.800 5.800 21 Si 0.914 3.086 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.249 1.249 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.427 0.573 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 10.690 1.588 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.179 3.821 3 C -0.338 4.338 4 C 0.347 3.653 5 O -0.402 6.402 6 O -0.276 6.276 7 C 0.023 3.977 8 C -0.203 4.203 9 C -0.227 4.227 10 N -0.276 5.276 11 C 0.056 3.944 12 N -0.222 5.222 13 C -0.160 4.160 14 C -0.176 4.176 15 C -0.230 4.230 16 C 0.023 3.977 17 C -0.458 4.458 18 H 0.109 0.891 19 C -0.133 4.133 20 N -0.423 5.423 21 Si 0.741 3.259 22 H -0.194 1.194 23 H -0.216 1.216 24 H -0.172 1.172 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.271 0.729 37 H 0.145 0.855 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.502 11.017 1.528 11.224 hybrid contribution 1.196 -1.239 0.423 1.774 sum -0.305 9.778 1.951 9.975 Atomic orbital electron populations 1.21194 0.90684 1.02807 1.04008 1.20138 0.93281 0.85455 0.83240 1.20682 0.90814 0.98604 1.23715 1.19835 0.89599 0.81554 0.74273 1.90917 1.70555 1.31543 1.47143 1.86245 1.20827 1.35562 1.84992 1.22148 0.78403 0.99693 0.97414 1.21864 1.00508 0.96740 1.01202 1.22217 1.01378 1.02833 0.96243 1.41378 1.44775 1.14599 1.26801 1.18231 0.99692 0.87425 0.89083 1.66530 1.17320 1.36314 1.02018 1.21405 1.05551 0.91495 0.97541 1.21392 0.99908 0.97519 0.98736 1.21197 1.04675 0.99328 0.97799 1.18024 0.95440 0.89793 0.94419 1.19138 1.09657 1.20740 0.96314 0.89086 1.26101 0.95586 0.92322 0.99322 1.69676 1.19938 1.19817 1.32903 0.86296 0.76679 0.80587 0.82362 1.19382 1.21646 1.17220 0.88848 0.90668 0.90992 0.84618 0.90062 0.91774 0.90924 0.91966 0.91826 0.91365 0.92033 0.72894 0.85549 0.87866 0.86918 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.27 36.01 0.33 -1.53 16 2 C 0.28 5.10 5.78 -81.52 -0.47 4.63 16 3 C -0.31 -5.34 9.61 -39.57 -0.38 -5.72 16 4 C 0.50 9.52 7.64 31.90 0.24 9.77 16 5 O -0.51 -11.45 13.23 -19.42 -0.26 -11.70 16 6 O -0.36 -6.05 9.75 -41.23 -0.40 -6.46 16 7 C 0.08 1.17 3.14 -26.73 -0.08 1.08 16 8 C -0.15 -1.59 9.56 37.16 0.36 -1.24 16 9 C -0.17 -2.35 9.53 37.16 0.35 -2.00 16 10 N -0.64 -13.82 3.70 -7.94 -0.03 -13.84 16 11 C 0.29 6.93 7.31 -154.82 -1.13 5.80 16 12 N -0.51 -11.37 8.73 -11.82 -0.10 -11.48 16 13 C -0.01 -0.14 11.17 -17.33 -0.19 -0.33 16 14 C -0.15 -3.28 10.08 -39.50 -0.40 -3.68 16 15 C -0.20 -4.87 7.41 -38.61 -0.29 -5.15 16 16 C 0.03 0.77 5.12 -106.48 -0.55 0.22 16 17 C -0.43 -11.33 8.89 -37.89 -0.34 -11.66 16 18 H 0.09 2.48 7.12 -52.48 -0.37 2.10 16 19 C 0.09 2.25 5.42 -17.32 -0.09 2.15 16 20 N -0.80 -20.92 13.93 55.55 0.77 -20.14 16 21 Si 0.91 21.02 24.59 -169.99 -4.18 16.84 16 22 H -0.27 -5.85 6.44 56.52 0.36 -5.49 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.25 -6.06 7.06 56.52 0.40 -5.66 16 25 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 26 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.08 1.34 7.11 -51.93 -0.37 0.97 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.43 9.60 5.79 -40.82 -0.24 9.37 16 37 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 39 H 0.11 2.65 4.66 -52.49 -0.24 2.41 16 40 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 LS Contribution 334.65 15.07 5.04 5.04 Total: -1.00 -29.15 334.65 -7.25 -36.40 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.46 Total: 13.00 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.63 Total: -7.65 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.64 Total: -45.46 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.66 Total: -18.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.18 Total: 16.84 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.15 -7.25 -36.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166728775.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.412 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds