Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.47106 * 119.99875 * 2 1 4 4 O 1.21615 * 119.99963 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99867 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47030 * 180.02562 * 6 5 3 8 8 N 1.46506 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.39942 * 119.99708 * 179.97438 * 8 7 6 10 10 C 1.38861 * 120.02154 * 359.73393 * 9 8 7 11 11 C 1.38108 * 119.98073 * 179.74205 * 10 9 8 12 12 C 1.38696 * 120.01722 * 0.50378 * 11 10 9 13 13 O 1.36001 * 119.98124 * 179.75062 * 12 11 10 14 14 C 1.42905 * 116.99906 * 0.02562 * 13 12 11 15 15 C 1.50701 * 109.47100 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00097 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99788 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00242 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00060 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47114 * 60.00309 * 19 17 15 21 21 H 1.48495 * 109.47407 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47351 * 300.00463 * 19 17 15 23 23 C 1.38702 * 120.04020 * 359.76690 * 12 11 10 24 24 C 1.38111 * 120.01708 * 359.97438 * 23 12 11 25 25 H 1.07999 * 120.00358 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99400 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00358 * 179.97438 * 2 1 3 28 28 H 0.96999 * 120.00047 * 0.02562 * 5 3 2 29 29 H 1.09004 * 109.47074 * 60.00441 * 6 5 3 30 30 H 1.09004 * 109.47714 * 300.00350 * 6 5 3 31 31 H 1.09004 * 109.46930 * 60.00232 * 7 6 5 32 32 H 1.09000 * 109.47312 * 300.00176 * 7 6 5 33 33 H 0.96999 * 120.00080 * 0.02562 * 8 7 6 34 34 H 1.08006 * 120.00671 * 359.97438 * 10 9 8 35 35 H 1.07998 * 119.98584 * 180.22997 * 11 10 9 36 36 H 1.08996 * 109.46967 * 300.00382 * 14 13 12 37 37 H 1.08997 * 109.46869 * 60.00097 * 14 13 12 38 38 H 0.97004 * 119.99967 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99057 * 179.97438 * 23 12 11 40 40 H 1.07997 * 120.00629 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3272 -0.0005 5 7 3.4132 1.2741 0.0005 6 6 4.1456 2.5428 0.0000 7 6 5.6498 2.2633 0.0001 8 7 6.3823 3.5322 0.0001 9 6 7.7817 3.5322 0.0008 10 6 8.4765 2.3299 0.0070 11 6 9.8576 2.3309 0.0022 12 6 10.5505 3.5323 0.0019 13 8 11.9105 3.5324 0.0023 14 6 12.5594 2.2592 0.0026 15 6 14.0534 2.4568 0.0037 16 1 14.4661 3.4547 0.0046 17 6 14.8933 1.3634 0.0047 18 7 14.3907 0.1481 0.0042 19 14 16.7452 1.6082 0.0068 20 1 17.1428 2.3671 1.2198 21 1 17.4194 0.2851 0.0070 22 1 17.1456 2.3672 -1.2052 23 6 9.8574 4.7337 0.0013 24 6 8.4763 4.7345 0.0007 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8700 -0.9353 0.0004 28 1 3.8982 0.4341 0.0005 29 1 3.8819 3.1149 0.8895 30 1 3.8825 3.1139 -0.8905 31 1 5.9132 1.6914 -0.8897 32 1 5.9132 1.6921 0.8903 33 1 5.8972 4.3722 0.0005 34 1 7.9369 1.3943 0.0117 35 1 10.3980 1.3959 0.0033 36 1 12.2662 1.7022 0.8925 37 1 12.2669 1.7022 -0.8874 38 1 14.9817 -0.6211 0.0045 39 1 10.3978 5.6688 0.0015 40 1 7.9367 5.6701 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169806870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -30.404258 kcal Electronic energy + Delta-G solvation = -21019.183899 eV Core-core repulsion = 17606.595078 eV Total energy + Delta-G solvation = -3412.588821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08765 -39.41158 -37.51658 -35.93653 -34.11140 -33.34732 -32.81709 -30.60063 -29.95689 -27.88404 -26.51957 -24.30654 -23.47889 -22.59641 -21.36459 -20.88986 -20.12012 -17.87557 -17.61383 -16.81067 -16.50070 -16.10470 -15.94577 -15.39479 -14.75325 -14.69055 -14.66527 -14.42026 -14.18712 -13.81989 -13.77701 -13.04844 -12.86718 -12.59160 -12.34100 -12.09942 -11.95134 -11.88109 -11.53466 -11.03139 -10.97512 -10.47182 -10.38919 -10.38627 -10.30146 -10.11512 -9.51717 -9.23072 -9.08439 -8.59500 -8.45808 -6.68696 -6.21864 -4.24968 0.95586 1.77998 2.14154 2.61123 2.91219 3.27660 3.30342 3.33979 3.65660 4.22600 4.28211 4.32668 4.47819 4.62349 4.66535 4.73331 5.04550 5.13218 5.15215 5.28676 5.33975 5.49296 5.54677 5.75774 5.80602 5.81757 5.88335 5.91723 6.01324 6.38744 6.57346 6.63877 6.84577 7.03745 7.07524 7.13964 7.21535 7.51516 7.71648 7.78774 7.82676 8.01403 8.58633 8.90312 9.40188 10.89431 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031501 B = 0.002131 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.654786 B =13133.797425 C =13996.702008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.215 4.215 3 C 0.544 3.456 4 O -0.545 6.545 5 N -0.723 5.723 6 C 0.110 3.890 7 C 0.121 3.879 8 N -0.755 5.755 9 C 0.154 3.846 10 C -0.152 4.152 11 C -0.167 4.167 12 C 0.105 3.895 13 O -0.322 6.322 14 C 0.195 3.805 15 C -0.523 4.523 16 H 0.069 0.931 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.913 3.087 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.124 4.124 24 C -0.152 4.152 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.405 0.595 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.125 0.875 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.239 -0.616 -0.004 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.236 4.236 3 C 0.332 3.668 4 O -0.424 6.424 5 N -0.375 5.375 6 C -0.015 4.015 7 C -0.005 4.005 8 N -0.391 5.391 9 C 0.056 3.944 10 C -0.174 4.174 11 C -0.187 4.187 12 C 0.057 3.943 13 O -0.236 6.236 14 C 0.122 3.878 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.740 3.260 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.144 4.144 24 C -0.174 4.174 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.146 0.854 28 H 0.239 0.761 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.231 0.769 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.143 0.857 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.467 -0.090 -0.004 24.468 hybrid contribution 1.002 -0.538 0.002 1.138 sum -23.465 -0.629 -0.002 23.473 Atomic orbital electron populations 1.24776 0.95374 1.03442 0.89498 1.22757 0.96492 0.96865 1.07511 1.18722 0.81917 0.90065 0.76080 1.90806 1.68256 1.33386 1.49912 1.45707 1.06435 1.09648 1.75667 1.21413 0.90581 0.86290 1.03174 1.21244 0.89490 0.88037 1.01714 1.44079 1.02560 1.06450 1.85961 1.17505 0.82567 0.93870 1.00500 1.20366 0.93669 0.95881 1.07471 1.21253 0.94180 0.98323 1.04907 1.19083 0.84760 0.93279 0.97173 1.86112 1.13820 1.36492 1.87146 1.20556 0.92287 0.78399 0.96581 1.20961 0.89208 0.93915 1.51963 0.91251 1.24932 0.99906 0.94643 0.94777 1.69942 1.35869 0.97852 1.49770 0.86314 0.83400 0.77350 0.78970 1.19876 1.21045 1.19881 1.20178 0.92788 0.96545 1.04853 1.20246 0.93296 0.95856 1.07985 0.86772 0.86558 0.85363 0.76056 0.90775 0.90782 0.91977 0.91991 0.76929 0.86710 0.84987 0.96344 0.96338 0.92362 0.85673 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 14.31 28.91 0.41 -0.06 16 2 C -0.22 -1.28 10.03 -37.80 -0.38 -1.66 16 3 C 0.54 4.96 7.76 -12.66 -0.10 4.87 16 4 O -0.54 -7.17 16.22 5.26 0.09 -7.09 16 5 N -0.72 -5.12 5.55 -61.49 -0.34 -5.46 16 6 C 0.11 0.87 5.79 -4.04 -0.02 0.84 16 7 C 0.12 1.01 5.03 -4.04 -0.02 0.99 16 8 N -0.75 -7.94 5.74 -58.58 -0.34 -8.28 16 9 C 0.15 2.18 6.66 -83.70 -0.56 1.62 16 10 C -0.15 -2.37 9.31 -39.40 -0.37 -2.74 16 11 C -0.17 -3.20 9.03 -39.46 -0.36 -3.55 16 12 C 0.11 2.19 6.69 -39.24 -0.26 1.93 16 13 O -0.32 -7.98 10.12 -19.74 -0.20 -8.18 16 14 C 0.19 5.25 4.49 36.01 0.16 5.41 16 15 C -0.52 -15.08 9.43 -34.44 -0.32 -15.41 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 19 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.12 -2.16 9.98 -39.46 -0.39 -2.56 16 24 C -0.15 -2.21 9.89 -39.40 -0.39 -2.60 16 25 H 0.11 0.74 7.49 -52.49 -0.39 0.34 16 26 H 0.12 0.28 8.06 -52.49 -0.42 -0.14 16 27 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 28 H 0.40 1.78 8.46 -40.82 -0.35 1.43 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 32 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16 33 H 0.40 3.52 8.49 -40.82 -0.35 3.17 16 34 H 0.11 1.52 6.73 -52.48 -0.35 1.17 16 35 H 0.13 2.66 6.29 -52.49 -0.33 2.33 16 36 H 0.02 0.52 7.66 -51.93 -0.40 0.12 16 37 H 0.02 0.52 7.66 -51.93 -0.40 0.12 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -33.72 348.94 -7.98 -41.70 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.47 Total: 2.33 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.69 Total: -11.34 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.06 Total: -39.04 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.11 Total: -15.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.72 -7.98 -41.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169806870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.298 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds