Wall clock time and date at job start Tue Mar 31 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.47106 * 119.99875 * 2 1 4 4 O 1.21615 * 119.99963 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99867 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47030 * 180.02562 * 6 5 3 8 8 N 1.46506 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.39942 * 119.99708 * 179.97438 * 8 7 6 10 10 C 1.38861 * 120.02154 * 359.73393 * 9 8 7 11 11 C 1.38108 * 119.98073 * 179.74205 * 10 9 8 12 12 C 1.38696 * 120.01722 * 0.50378 * 11 10 9 13 13 O 1.36001 * 119.98124 * 179.75062 * 12 11 10 14 14 C 1.42905 * 116.99906 * 0.02562 * 13 12 11 15 15 C 1.50701 * 109.47100 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00097 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99788 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00242 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00060 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47114 * 60.00309 * 19 17 15 21 21 H 1.48495 * 109.47407 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47351 * 300.00463 * 19 17 15 23 23 C 1.38702 * 120.04020 * 359.76690 * 12 11 10 24 24 C 1.38111 * 120.01708 * 359.97438 * 23 12 11 25 25 H 1.07999 * 120.00358 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99400 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00358 * 179.97438 * 2 1 3 28 28 H 0.96999 * 120.00047 * 0.02562 * 5 3 2 29 29 H 1.09004 * 109.47074 * 60.00441 * 6 5 3 30 30 H 1.09004 * 109.47714 * 300.00350 * 6 5 3 31 31 H 1.09004 * 109.46930 * 60.00232 * 7 6 5 32 32 H 1.09000 * 109.47312 * 300.00176 * 7 6 5 33 33 H 0.96999 * 120.00080 * 0.02562 * 8 7 6 34 34 H 1.08006 * 120.00671 * 359.97438 * 10 9 8 35 35 H 1.07998 * 119.98584 * 180.22997 * 11 10 9 36 36 H 1.08996 * 109.46967 * 300.00382 * 14 13 12 37 37 H 1.08997 * 109.46869 * 60.00097 * 14 13 12 38 38 H 0.97004 * 119.99967 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99057 * 179.97438 * 23 12 11 40 40 H 1.07997 * 120.00629 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3272 -0.0005 5 7 3.4132 1.2741 0.0005 6 6 4.1456 2.5428 0.0000 7 6 5.6498 2.2633 0.0001 8 7 6.3823 3.5322 0.0001 9 6 7.7817 3.5322 0.0008 10 6 8.4765 2.3299 0.0070 11 6 9.8576 2.3309 0.0022 12 6 10.5505 3.5323 0.0019 13 8 11.9105 3.5324 0.0023 14 6 12.5594 2.2592 0.0026 15 6 14.0534 2.4568 0.0037 16 1 14.4661 3.4547 0.0046 17 6 14.8933 1.3634 0.0047 18 7 14.3907 0.1481 0.0042 19 14 16.7452 1.6082 0.0068 20 1 17.1428 2.3671 1.2198 21 1 17.4194 0.2851 0.0070 22 1 17.1456 2.3672 -1.2052 23 6 9.8574 4.7337 0.0013 24 6 8.4763 4.7345 0.0007 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8700 -0.9353 0.0004 28 1 3.8982 0.4341 0.0005 29 1 3.8819 3.1149 0.8895 30 1 3.8825 3.1139 -0.8905 31 1 5.9132 1.6914 -0.8897 32 1 5.9132 1.6921 0.8903 33 1 5.8972 4.3722 0.0005 34 1 7.9369 1.3943 0.0117 35 1 10.3980 1.3959 0.0033 36 1 12.2662 1.7022 0.8925 37 1 12.2669 1.7022 -0.8874 38 1 14.9817 -0.6211 0.0045 39 1 10.3978 5.6688 0.0015 40 1 7.9367 5.6701 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169806870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:04 Heat of formation + Delta-G solvation = -54.634620 kcal Electronic energy + Delta-G solvation = -21020.234606 eV Core-core repulsion = 17606.595078 eV Total energy + Delta-G solvation = -3413.639528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92678 -40.69193 -38.91308 -36.94941 -35.25800 -34.80092 -33.83219 -31.93897 -31.05049 -29.68929 -27.81311 -25.40568 -25.01586 -23.51686 -22.53681 -22.23715 -20.74539 -19.18111 -18.50068 -18.37636 -18.08065 -16.95472 -16.80750 -16.59434 -16.44864 -16.34021 -15.57110 -15.42467 -15.38782 -15.05669 -14.46208 -14.33047 -14.13528 -13.96516 -13.61297 -13.20111 -13.14996 -12.90662 -12.79609 -12.74280 -12.72259 -12.25288 -12.02641 -11.75384 -11.27338 -11.11580 -10.78383 -10.75706 -10.31196 -10.14379 -9.87692 -8.37413 -7.97510 -6.51457 0.45422 0.46480 0.76532 1.39804 1.44802 1.53176 1.92785 2.30397 2.31504 2.79217 2.93715 2.95525 2.98599 3.65951 3.92202 3.98237 4.04590 4.07467 4.28700 4.38798 4.43984 4.53727 4.67583 4.75975 4.78459 4.85937 4.86860 5.02262 5.08318 5.25236 5.31050 5.34603 5.36465 5.48935 5.49082 5.64449 5.77890 5.89756 6.36348 6.50800 6.55929 6.86980 6.94513 7.17990 7.21585 8.74736 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031501 B = 0.002131 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.654786 B =13133.797425 C =13996.702008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.226 4.226 3 C 0.535 3.465 4 O -0.595 6.595 5 N -0.712 5.712 6 C 0.118 3.882 7 C 0.122 3.878 8 N -0.742 5.742 9 C 0.175 3.825 10 C -0.156 4.156 11 C -0.179 4.179 12 C 0.049 3.951 13 O -0.345 6.345 14 C 0.215 3.785 15 C -0.558 4.558 16 H 0.065 0.935 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.988 3.012 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.265 1.265 23 C -0.122 4.122 24 C -0.146 4.146 25 H 0.095 0.905 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.420 0.580 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.140 0.860 35 H 0.107 0.893 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.274 0.726 39 H 0.134 0.866 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.510 -0.815 -0.002 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.247 4.247 3 C 0.325 3.675 4 O -0.478 6.478 5 N -0.364 5.364 6 C -0.007 4.007 7 C -0.003 4.003 8 N -0.377 5.377 9 C 0.074 3.926 10 C -0.178 4.178 11 C -0.199 4.199 12 C 0.003 3.997 13 O -0.259 6.259 14 C 0.141 3.859 15 C -0.595 4.595 16 H 0.084 0.916 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.810 3.190 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.189 1.189 23 C -0.141 4.141 24 C -0.168 4.168 25 H 0.113 0.887 26 H 0.167 0.833 27 H 0.178 0.822 28 H 0.257 0.743 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.245 0.755 34 H 0.158 0.842 35 H 0.125 0.875 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -25.785 -0.304 -0.002 25.787 hybrid contribution 1.106 -0.462 0.001 1.199 sum -24.679 -0.766 -0.001 24.691 Atomic orbital electron populations 1.25011 0.95334 1.04107 0.87871 1.22907 0.96752 0.96418 1.08590 1.19345 0.82367 0.90627 0.75134 1.90781 1.69234 1.35287 1.52459 1.45632 1.06068 1.10103 1.74611 1.21244 0.90160 0.86645 1.02629 1.21331 0.89397 0.87093 1.02458 1.44141 1.01155 1.08125 1.84286 1.17586 0.84177 0.93171 0.97677 1.20530 0.92208 0.97825 1.07239 1.21163 0.95783 0.96845 1.06110 1.19512 0.83254 0.95377 1.01577 1.86016 1.16491 1.34744 1.88697 1.20065 0.92057 0.79290 0.94468 1.21318 0.90458 0.94250 1.53506 0.91645 1.25974 1.05415 0.94017 0.93500 1.70053 1.38005 0.98762 1.49621 0.85162 0.76449 0.77913 0.79462 1.18923 1.19741 1.18931 1.20407 0.94077 0.95597 1.04032 1.20607 0.92135 0.97668 1.06347 0.88700 0.83320 0.82237 0.74300 0.91384 0.91392 0.91171 0.91179 0.75501 0.84207 0.87469 0.98499 0.98492 0.91757 0.84767 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 14.31 66.65 0.95 0.23 16 2 C -0.23 -2.21 10.03 23.43 0.23 -1.98 16 3 C 0.53 9.12 7.76 86.57 0.67 9.80 16 4 O -0.60 -15.62 16.22 -4.08 -0.07 -15.68 16 5 N -0.71 -8.63 5.55 -466.70 -2.59 -11.22 16 6 C 0.12 1.61 5.79 86.38 0.50 2.11 16 7 C 0.12 1.68 5.03 86.38 0.43 2.11 16 8 N -0.74 -13.13 5.74 -339.25 -1.95 -15.08 16 9 C 0.18 4.51 6.66 38.14 0.25 4.77 16 10 C -0.16 -4.71 9.31 22.39 0.21 -4.50 16 11 C -0.18 -7.17 9.03 22.35 0.20 -6.97 16 12 C 0.05 2.14 6.69 22.49 0.15 2.29 16 13 O -0.34 -18.15 10.12 -93.56 -0.95 -19.10 16 14 C 0.21 12.39 4.49 71.24 0.32 12.71 16 15 C -0.56 -33.54 9.43 25.60 0.24 -33.30 16 16 H 0.07 3.87 7.81 -2.91 -0.02 3.84 16 17 C 0.01 0.59 5.46 84.65 0.46 1.05 16 18 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 19 Si 0.99 44.03 29.54 68.60 2.03 46.06 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 C -0.12 -4.21 9.98 22.35 0.22 -3.99 16 24 C -0.15 -3.87 9.89 22.39 0.22 -3.65 16 25 H 0.09 1.19 7.49 -2.91 -0.02 1.17 16 26 H 0.15 0.25 8.06 -2.91 -0.02 0.23 16 27 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 28 H 0.42 2.54 8.46 -92.71 -0.78 1.75 16 29 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.94 7.96 -2.38 -0.02 0.92 16 32 H 0.07 0.94 7.94 -2.39 -0.02 0.92 16 33 H 0.41 5.72 8.49 -92.71 -0.79 4.93 16 34 H 0.14 3.43 6.73 -2.91 -0.02 3.41 16 35 H 0.11 4.71 6.29 -2.91 -0.02 4.69 16 36 H 0.00 -0.16 7.66 -2.39 -0.02 -0.18 16 37 H 0.00 -0.16 7.66 -2.39 -0.02 -0.18 16 38 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -77.14 348.94 1.33 -75.82 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -0.51 Total: 13.38 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 5.08 Total: -19.31 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -4.25 Total: -81.17 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.01 Total: -34.78 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.14 1.33 -75.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169806870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.181 kcal (2) G-P(sol) polarization free energy of solvation -77.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds