Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 C 1.50708 * 109.46907 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99767 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99999 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99816 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99984 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46855 * 89.99996 * 10 8 6 12 12 H 1.48499 * 109.47056 * 209.99299 * 10 8 6 13 13 H 1.48491 * 109.47107 * 329.99849 * 10 8 6 14 14 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 15 15 C 1.46901 * 110.99793 * 85.00144 * 14 2 1 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 2 17 17 C 1.38665 * 119.79955 * 90.00021 * 16 15 14 18 18 C 1.37996 * 120.46013 * 180.02562 * 17 16 15 19 19 C 1.38566 * 119.89070 * 359.97438 * 18 17 16 20 20 O 1.35269 * 133.81391 * 179.97438 * 19 18 17 21 21 C 1.34382 * 108.18864 * 180.02562 * 20 19 18 22 22 O 1.35186 * 124.93403 * 179.97438 * 21 20 19 23 23 N 1.30621 * 110.13637 * 0.02562 * 21 20 19 24 24 C 1.36147 * 108.72038 * 359.97438 * 23 21 20 25 25 C 1.37750 * 119.80214 * 269.72557 * 16 15 14 26 26 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 27 27 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 29 29 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 30 30 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 31 31 H 1.09001 * 109.47460 * 300.00033 * 5 4 2 32 32 H 1.08999 * 109.47250 * 60.00412 * 5 4 2 33 33 H 0.97000 * 120.00039 * 179.97438 * 9 8 6 34 34 H 1.00899 * 110.99995 * 321.04542 * 14 2 1 35 35 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 36 36 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 37 37 H 1.08001 * 119.76576 * 359.97438 * 17 16 15 38 38 H 1.07998 * 120.05846 * 179.97438 * 18 17 16 39 39 H 0.96699 * 113.99680 * 270.02177 * 22 21 20 40 40 H 1.08000 * 120.13283 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5438 7 1 3.3688 -1.8052 3.2125 8 6 5.4185 -1.3613 2.8150 9 7 5.8569 -1.9813 3.8888 10 14 6.6265 -0.5299 1.6579 11 1 6.8321 0.8775 2.0848 12 1 7.9235 -1.2523 1.6936 13 1 6.0844 -0.5538 0.2756 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5884 -0.5216 -3.5558 17 6 1.6898 -1.1528 -4.4024 18 6 2.1382 -1.8384 -5.5129 19 6 3.4953 -1.8977 -5.7864 20 8 4.2289 -2.4735 -6.7663 21 6 5.5249 -2.2068 -6.5318 22 8 6.5530 -2.6224 -7.3050 23 7 5.6472 -1.4885 -5.4477 24 6 4.4078 -1.2603 -4.9325 25 6 3.9404 -0.5658 -3.8161 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4259 32 1 3.8532 0.4370 1.3573 33 1 6.8076 -2.0078 4.0794 34 1 1.4495 -1.4980 -1.4100 35 1 2.7588 1.0462 -2.1183 36 1 1.0870 0.6163 -2.5525 37 1 0.6317 -1.1082 -4.1908 38 1 1.4327 -2.3281 -6.1677 39 1 6.9164 -3.4808 -7.0480 40 1 4.6361 -0.0692 -3.1560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -6.141499 kcal Electronic energy + Delta-G solvation = -22270.025157 eV Core-core repulsion = 18858.488448 eV Total energy + Delta-G solvation = -3411.536708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.44614 -39.06892 -38.08447 -36.97626 -34.88594 -33.40892 -32.20595 -30.53903 -29.75590 -28.76703 -25.63071 -24.89678 -23.63192 -22.18798 -22.06906 -21.06203 -19.89335 -19.66717 -18.01618 -17.59313 -16.84084 -16.50108 -15.86363 -15.29671 -15.04453 -14.64668 -14.31175 -14.18191 -13.93732 -13.41525 -13.05798 -13.00530 -12.66342 -12.50203 -12.31379 -12.10880 -12.02647 -11.67207 -11.51455 -11.41170 -11.27619 -10.82701 -10.67244 -10.48446 -9.80276 -9.62659 -9.46705 -8.99958 -8.89206 -8.65258 -8.40714 -8.06520 -5.92248 -3.88301 0.38406 0.96601 1.62923 2.09538 3.18634 3.38955 3.41198 3.49010 3.57008 4.24964 4.36645 4.58366 4.60439 4.77038 4.84295 4.95111 5.05635 5.22531 5.27289 5.39297 5.43814 5.50072 5.56018 5.69864 5.81362 5.83920 5.96651 6.02756 6.17766 6.24092 6.28477 6.42551 6.52464 6.71551 6.72017 7.10585 7.27350 7.28788 7.52980 7.62547 7.76394 7.96776 8.67851 9.13917 9.72201 11.21620 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.004305 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.840160 B = 6502.023421 C = 8289.255163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.081 3.919 3 H 0.074 0.926 4 C -0.090 4.090 5 C -0.007 4.007 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.670 5.670 15 C 0.099 3.901 16 C -0.075 4.075 17 C -0.081 4.081 18 C -0.094 4.094 19 C 0.016 3.984 20 O -0.229 6.229 21 C 0.411 3.589 22 O -0.409 6.409 23 N -0.458 5.458 24 C 0.030 3.970 25 C -0.031 4.031 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.002 0.998 33 H 0.260 0.740 34 H 0.339 0.661 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.420 0.580 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 1.168 -22.293 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.028 4.028 3 H 0.092 0.908 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.301 5.301 15 C -0.030 4.030 16 C -0.077 4.077 17 C -0.099 4.099 18 C -0.112 4.112 19 C -0.034 4.034 20 O -0.123 6.123 21 C 0.161 3.839 22 O -0.217 6.217 23 N -0.201 5.201 24 C -0.082 4.082 25 C -0.051 4.051 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.157 0.843 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.280 0.720 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.605 1.882 -22.153 23.498 hybrid contribution -0.439 -0.424 -0.983 1.157 sum -8.043 1.458 -23.137 24.538 Atomic orbital electron populations 1.22522 0.98195 1.01774 1.01466 1.21803 0.91366 0.98367 0.91308 0.90815 1.21452 0.98997 0.99061 0.93267 1.19481 0.91498 0.95839 0.97617 1.21261 0.92793 1.33932 1.07505 0.91445 1.25020 0.98453 0.95094 0.95033 1.69930 1.14405 1.44133 1.26514 0.86791 0.80449 0.79461 0.82739 1.20623 1.21730 1.18439 1.60592 1.58090 1.08935 1.02470 1.20903 0.99414 0.94907 0.87742 1.19725 0.92383 0.99033 0.96551 1.20944 1.00081 0.95893 0.93008 1.19778 0.89536 1.02539 0.99385 1.20021 0.94389 1.00190 0.88752 1.84455 1.18843 1.63072 1.45955 1.22449 0.79023 0.94412 0.88008 1.84899 1.40483 1.43004 1.53354 1.71078 1.24249 1.17995 1.06748 1.19585 0.87466 1.02638 0.98509 1.20274 0.95253 0.96193 0.93350 0.93614 0.92593 0.92035 0.92835 0.92846 0.95004 0.97941 0.92992 0.84279 0.89786 0.94191 0.84221 0.84605 0.71960 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.16 37.16 0.34 -1.74 16 2 C 0.08 1.18 2.59 -67.71 -0.18 1.01 16 3 H 0.07 1.09 7.80 -51.93 -0.40 0.69 16 4 C -0.09 -1.73 4.83 -26.73 -0.13 -1.85 16 5 C -0.01 -0.17 3.93 -27.88 -0.11 -0.28 16 6 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 7 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.91 13.96 55.43 0.77 -28.14 16 10 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 14 N -0.67 -9.29 5.69 -107.99 -0.61 -9.90 16 15 C 0.10 1.12 5.60 -4.97 -0.03 1.09 16 16 C -0.07 -0.86 5.39 -104.64 -0.56 -1.42 16 17 C -0.08 -0.75 9.68 -39.51 -0.38 -1.13 16 18 C -0.09 -0.92 10.06 -39.55 -0.40 -1.32 16 19 C 0.02 0.21 7.42 -38.69 -0.29 -0.08 16 20 O -0.23 -2.84 10.78 -20.53 -0.22 -3.06 16 21 C 0.41 5.00 9.54 52.25 0.50 5.50 16 22 O -0.41 -3.47 13.62 -40.54 -0.55 -4.02 16 23 N -0.46 -6.77 11.37 -12.79 -0.15 -6.92 16 24 C 0.03 0.43 7.23 -84.69 -0.61 -0.19 16 25 C -0.03 -0.43 9.73 -39.27 -0.38 -0.81 16 26 H 0.04 0.45 7.45 -51.93 -0.39 0.06 16 27 H 0.05 0.63 8.13 -51.93 -0.42 0.20 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.79 6.81 -51.93 -0.35 0.44 16 32 H 0.00 0.06 7.57 -51.93 -0.39 -0.34 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.34 4.25 8.46 -39.29 -0.33 3.92 16 35 H 0.08 1.00 7.99 -51.93 -0.41 0.58 16 36 H 0.04 0.37 7.38 -51.93 -0.38 -0.01 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.42 1.07 9.06 45.56 0.41 1.48 16 40 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -35.61 339.49 -7.77 -43.38 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.80 Total: 0.37 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -2.66 Total: -14.82 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.01 Total: -44.96 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.77 Total: -7.08 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.61 -7.77 -43.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.240 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds