Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 C 1.50708 * 109.46907 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99767 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99999 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99816 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99984 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46855 * 89.99996 * 10 8 6 12 12 H 1.48499 * 109.47056 * 209.99299 * 10 8 6 13 13 H 1.48491 * 109.47107 * 329.99849 * 10 8 6 14 14 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 15 15 C 1.46901 * 110.99793 * 85.00144 * 14 2 1 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 2 17 17 C 1.38665 * 119.79955 * 90.00021 * 16 15 14 18 18 C 1.37996 * 120.46013 * 180.02562 * 17 16 15 19 19 C 1.38566 * 119.89070 * 359.97438 * 18 17 16 20 20 O 1.35269 * 133.81391 * 179.97438 * 19 18 17 21 21 C 1.34382 * 108.18864 * 180.02562 * 20 19 18 22 22 O 1.35186 * 124.93403 * 179.97438 * 21 20 19 23 23 N 1.30621 * 110.13637 * 0.02562 * 21 20 19 24 24 C 1.36147 * 108.72038 * 359.97438 * 23 21 20 25 25 C 1.37750 * 119.80214 * 269.72557 * 16 15 14 26 26 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 27 27 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 29 29 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 30 30 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 31 31 H 1.09001 * 109.47460 * 300.00033 * 5 4 2 32 32 H 1.08999 * 109.47250 * 60.00412 * 5 4 2 33 33 H 0.97000 * 120.00039 * 179.97438 * 9 8 6 34 34 H 1.00899 * 110.99995 * 321.04542 * 14 2 1 35 35 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 36 36 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 37 37 H 1.08001 * 119.76576 * 359.97438 * 17 16 15 38 38 H 1.07998 * 120.05846 * 179.97438 * 18 17 16 39 39 H 0.96699 * 113.99680 * 270.02177 * 22 21 20 40 40 H 1.08000 * 120.13283 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5438 7 1 3.3688 -1.8052 3.2125 8 6 5.4185 -1.3613 2.8150 9 7 5.8569 -1.9813 3.8888 10 14 6.6265 -0.5299 1.6579 11 1 6.8321 0.8775 2.0848 12 1 7.9235 -1.2523 1.6936 13 1 6.0844 -0.5538 0.2756 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5884 -0.5216 -3.5558 17 6 1.6898 -1.1528 -4.4024 18 6 2.1382 -1.8384 -5.5129 19 6 3.4953 -1.8977 -5.7864 20 8 4.2289 -2.4735 -6.7663 21 6 5.5249 -2.2068 -6.5318 22 8 6.5530 -2.6224 -7.3050 23 7 5.6472 -1.4885 -5.4477 24 6 4.4078 -1.2603 -4.9325 25 6 3.9404 -0.5658 -3.8161 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4259 32 1 3.8532 0.4370 1.3573 33 1 6.8076 -2.0078 4.0794 34 1 1.4495 -1.4980 -1.4100 35 1 2.7588 1.0462 -2.1183 36 1 1.0870 0.6163 -2.5525 37 1 0.6317 -1.1082 -4.1908 38 1 1.4327 -2.3281 -6.1677 39 1 6.9164 -3.4808 -7.0480 40 1 4.6361 -0.0692 -3.1560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -35.723719 kcal Electronic energy + Delta-G solvation = -22271.307938 eV Core-core repulsion = 18858.488448 eV Total energy + Delta-G solvation = -3412.819490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.33614 -39.91664 -38.88065 -38.06836 -35.84225 -35.23120 -33.68553 -31.94697 -30.84352 -29.78016 -27.10838 -26.13731 -24.45508 -23.16512 -22.98316 -22.64867 -21.36820 -20.43874 -18.93142 -18.75735 -18.46845 -17.67061 -16.78562 -16.38798 -16.29703 -15.83537 -15.60134 -15.18026 -14.94257 -14.78525 -14.33372 -14.31163 -13.84966 -13.75774 -13.44948 -13.31133 -13.03664 -12.94401 -12.84569 -12.58632 -12.37821 -12.23655 -11.99945 -11.65298 -11.55893 -11.44175 -11.31134 -11.07161 -10.71067 -9.78128 -9.51596 -9.07815 -8.26191 -6.27152 -0.44641 0.08927 0.81992 1.22383 1.34359 1.38157 1.51838 2.36343 2.38760 2.51328 3.10777 3.38480 3.45116 3.75209 3.96472 4.03342 4.09426 4.20416 4.23286 4.38355 4.48621 4.54828 4.69914 4.80664 4.82971 4.98572 4.99306 5.02338 5.08055 5.11303 5.17440 5.32357 5.43573 5.46660 5.60319 5.65464 5.73246 5.81737 6.16443 6.27980 6.36478 6.38464 6.67784 6.82345 7.37279 8.91024 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.004305 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.840160 B = 6502.023421 C = 8289.255163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 H 0.073 0.927 4 C -0.085 4.085 5 C 0.000 4.000 6 C -0.527 4.527 7 H 0.030 0.970 8 C 0.004 3.996 9 N -0.956 5.956 10 Si 0.946 3.054 11 H -0.267 1.267 12 H -0.288 1.288 13 H -0.249 1.249 14 N -0.692 5.692 15 C 0.104 3.896 16 C -0.071 4.071 17 C -0.069 4.069 18 C -0.084 4.084 19 C 0.000 4.000 20 O -0.231 6.231 21 C 0.421 3.579 22 O -0.406 6.406 23 N -0.501 5.501 24 C 0.002 3.998 25 C -0.061 4.061 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.005 0.995 33 H 0.264 0.736 34 H 0.347 0.653 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.445 0.555 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 1.820 -24.824 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 H 0.092 0.908 4 C -0.124 4.124 5 C -0.037 4.037 6 C -0.565 4.565 7 H 0.048 0.952 8 C -0.192 4.192 9 N -0.598 5.598 10 Si 0.770 3.230 11 H -0.192 1.192 12 H -0.215 1.215 13 H -0.173 1.173 14 N -0.324 5.324 15 C -0.024 4.024 16 C -0.073 4.073 17 C -0.087 4.087 18 C -0.103 4.103 19 C -0.049 4.049 20 O -0.125 6.125 21 C 0.171 3.829 22 O -0.218 6.218 23 N -0.245 5.245 24 C -0.109 4.109 25 C -0.081 4.081 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.167 0.833 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.198 0.802 38 H 0.187 0.813 39 H 0.310 0.690 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.544 2.519 -24.692 26.592 hybrid contribution 0.158 -0.710 -0.167 0.747 sum -9.386 1.809 -24.859 26.633 Atomic orbital electron populations 1.22396 0.95219 1.02521 1.02794 1.21534 0.93581 0.97311 0.89394 0.90844 1.21350 0.95575 0.99337 0.96096 1.19382 0.94952 0.94833 0.94570 1.21698 0.92467 1.33675 1.08679 0.95213 1.25952 1.00641 0.95905 0.96713 1.70078 1.15042 1.46003 1.28639 0.85708 0.77696 0.78759 0.80794 1.19214 1.21463 1.17277 1.60429 1.58921 1.09950 1.03149 1.20891 1.00878 0.94037 0.86609 1.19835 0.91717 0.98846 0.96860 1.21354 1.01518 0.94122 0.91733 1.20268 0.88742 1.01634 0.99637 1.20450 0.95300 1.00519 0.88640 1.84454 1.18909 1.63131 1.46022 1.22563 0.79595 0.93387 0.87358 1.84872 1.39383 1.44873 1.52707 1.71014 1.25255 1.19878 1.08402 1.19795 0.87939 1.03755 0.99382 1.20296 0.96274 0.97720 0.93761 0.90880 0.92161 0.92103 0.93345 0.93762 0.95614 0.97680 0.92769 0.83343 0.90874 0.90856 0.80250 0.81331 0.68996 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.16 71.98 0.66 -2.66 16 2 C 0.09 2.46 2.59 44.91 0.12 2.58 16 3 H 0.07 2.00 7.80 -2.39 -0.02 1.98 16 4 C -0.09 -3.24 4.83 30.59 0.15 -3.10 16 5 C 0.00 0.00 3.93 29.85 0.12 0.12 16 6 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 7 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 8 C 0.00 0.23 5.47 84.65 0.46 0.69 16 9 N -0.96 -62.36 13.96 21.45 0.30 -62.06 16 10 Si 0.95 47.33 27.47 68.60 1.88 49.22 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 13 H -0.25 -11.92 6.54 99.48 0.65 -11.27 16 14 N -0.69 -17.55 5.69 -495.56 -2.82 -20.38 16 15 C 0.10 2.05 5.60 85.56 0.48 2.53 16 16 C -0.07 -1.46 5.39 -19.88 -0.11 -1.57 16 17 C -0.07 -1.01 9.68 22.31 0.22 -0.79 16 18 C -0.08 -1.38 10.06 22.29 0.22 -1.15 16 19 C 0.00 0.01 7.42 22.85 0.17 0.18 16 20 O -0.23 -5.49 10.78 9.21 0.10 -5.39 16 21 C 0.42 10.09 9.54 130.42 1.24 11.33 16 22 O -0.41 -6.44 13.62 -62.39 -0.85 -7.29 16 23 N -0.50 -15.12 11.37 -422.73 -4.81 -19.93 16 24 C 0.00 0.07 7.23 39.29 0.28 0.35 16 25 C -0.06 -1.66 9.73 22.47 0.22 -1.44 16 26 H 0.07 1.06 7.45 -2.39 -0.02 1.04 16 27 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.03 1.27 6.81 -2.39 -0.02 1.25 16 32 H 0.00 0.23 7.57 -2.39 -0.02 0.21 16 33 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 34 H 0.35 7.67 8.46 -89.69 -0.76 6.91 16 35 H 0.07 1.61 7.99 -2.39 -0.02 1.59 16 36 H 0.07 0.99 7.38 -2.39 -0.02 0.97 16 37 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.44 1.63 9.06 -74.06 -0.67 0.96 16 40 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -80.41 339.49 -2.13 -82.54 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -0.41 Total: 7.60 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.48 Total: -24.31 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -7.33 Total: -102.37 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.75 Total: -12.68 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.88 Total: 49.22 kcal Total: -80.41 -2.13 -82.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.819 kcal (2) G-P(sol) polarization free energy of solvation -80.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds