Wall clock time and date at job start Tue Mar 31 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46580 * 2 1 4 4 C 1.53000 * 109.47021 * 240.00689 * 2 1 3 5 5 C 1.53000 * 109.46900 * 174.99848 * 4 2 1 6 6 C 1.50702 * 109.46824 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99915 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00219 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99706 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00376 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47041 * 90.00175 * 10 8 6 12 12 H 1.48499 * 109.47511 * 210.00241 * 10 8 6 13 13 H 1.48497 * 109.47149 * 330.00378 * 10 8 6 14 14 N 1.46900 * 109.47038 * 120.00443 * 2 1 3 15 15 C 1.46900 * 110.99761 * 274.99727 * 14 2 1 16 16 C 1.50700 * 109.47215 * 180.02562 * 15 14 2 17 17 C 1.38657 * 119.79998 * 89.99829 * 16 15 14 18 18 C 1.38005 * 120.46075 * 179.97438 * 17 16 15 19 19 C 1.38562 * 119.89036 * 0.02562 * 18 17 16 20 20 O 1.35261 * 133.81310 * 180.02562 * 19 18 17 21 21 C 1.34385 * 108.18765 * 179.97438 * 20 19 18 22 22 O 1.35188 * 124.93269 * 179.97438 * 21 20 19 23 23 N 1.30615 * 110.13572 * 0.02562 * 21 20 19 24 24 C 1.36145 * 108.72099 * 359.97438 * 23 21 20 25 25 C 1.37755 * 119.80287 * 270.00403 * 16 15 14 26 26 H 1.09000 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47264 * 299.99615 * 1 2 3 28 28 H 1.08999 * 109.47471 * 59.99604 * 1 2 3 29 29 H 1.09000 * 109.46697 * 294.99771 * 4 2 1 30 30 H 1.08999 * 109.47397 * 54.99324 * 4 2 1 31 31 H 1.08995 * 109.46944 * 299.99622 * 5 4 2 32 32 H 1.08998 * 109.47036 * 60.00146 * 5 4 2 33 33 H 0.97005 * 120.00488 * 179.97438 * 9 8 6 34 34 H 1.00893 * 111.00086 * 38.94997 * 14 2 1 35 35 H 1.09002 * 109.47194 * 60.00700 * 15 14 2 36 36 H 1.09004 * 109.47192 * 300.00439 * 15 14 2 37 37 H 1.08003 * 119.77291 * 0.25914 * 17 16 15 38 38 H 1.08003 * 120.05082 * 180.02562 * 18 17 16 39 39 H 0.96700 * 113.99857 * 270.00995 * 22 21 20 40 40 H 1.08002 * 120.13112 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 6 4.0672 -1.3239 -2.5440 7 1 3.3686 -1.8043 -3.2132 8 6 5.4183 -1.3601 -2.8159 9 7 6.2689 -0.7748 -2.0012 10 14 6.0410 -2.2406 -4.3411 11 1 6.0905 -1.2864 -5.4779 12 1 7.4025 -2.7745 -4.0834 13 1 5.1250 -3.3607 -4.6747 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5885 -0.5217 3.5557 17 6 3.9498 -0.5710 3.8145 18 6 4.4281 -1.2481 4.9178 19 6 3.5440 -1.8844 5.7743 20 8 3.6946 -2.6088 6.9066 21 6 2.4761 -2.9894 7.3262 22 8 2.2342 -3.7307 8.4306 23 7 1.5593 -2.5401 6.5116 24 6 2.1661 -1.8376 5.5156 25 6 1.6959 -1.1489 4.3968 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.7516 -1.7714 -1.2057 30 1 1.6053 -0.2616 -2.1370 31 1 3.8531 0.4372 -1.3574 32 1 3.9994 -1.0727 -0.4261 33 1 7.2196 -0.8005 -2.1922 34 1 1.4496 -1.4979 1.4099 35 1 1.0871 0.6161 2.5526 36 1 2.7589 1.0461 2.1182 37 1 4.6404 -0.0722 3.1506 38 1 5.4897 -1.2819 5.1134 39 1 2.2289 -4.6844 8.2707 40 1 0.6365 -1.1081 4.1908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:07 Heat of formation + Delta-G solvation = -9.808618 kcal Electronic energy + Delta-G solvation = -22072.153241 eV Core-core repulsion = 18660.457514 eV Total energy + Delta-G solvation = -3411.695727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.39770 -38.98568 -38.05063 -36.85422 -34.83227 -33.38258 -32.17141 -30.27284 -29.55820 -28.56380 -25.47175 -24.77906 -23.51194 -22.18790 -21.97506 -21.28982 -19.88674 -19.60301 -17.91530 -17.56445 -16.76843 -16.11030 -15.51034 -15.34080 -14.94139 -14.71006 -14.36632 -14.33469 -13.68078 -13.30595 -12.98137 -12.95386 -12.55787 -12.38944 -12.14976 -12.07912 -11.64480 -11.52028 -11.42201 -11.28032 -11.12934 -10.83163 -10.66821 -10.44329 -10.22164 -9.64172 -9.21746 -8.91062 -8.82192 -8.56248 -8.23441 -7.91795 -5.89025 -3.89593 0.45474 1.05226 1.67969 2.15717 3.22013 3.36800 3.43081 3.46567 3.47192 4.29929 4.48882 4.54028 4.72405 4.83565 4.95269 5.09925 5.21420 5.34062 5.37058 5.46803 5.54252 5.56664 5.66921 5.74621 5.91296 5.93649 6.07483 6.13189 6.26519 6.37738 6.46100 6.49041 6.65970 6.72703 6.88615 7.29287 7.30810 7.44343 7.74918 7.84698 8.07914 8.22817 8.57826 9.19224 9.72973 11.22038 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.003217 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.301336 B = 8700.593684 C = 9677.208967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 H 0.074 0.926 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.666 5.666 15 C 0.099 3.901 16 C -0.068 4.068 17 C -0.057 4.057 18 C -0.092 4.092 19 C 0.018 3.982 20 O -0.228 6.228 21 C 0.408 3.592 22 O -0.410 6.410 23 N -0.463 5.463 24 C 0.025 3.975 25 C -0.057 4.057 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.007 0.993 32 H 0.033 0.967 33 H 0.257 0.743 34 H 0.337 0.663 35 H 0.037 0.963 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.419 0.581 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.571 -1.213 17.452 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 H 0.092 0.908 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.297 5.297 15 C -0.030 4.030 16 C -0.070 4.070 17 C -0.075 4.075 18 C -0.111 4.111 19 C -0.032 4.032 20 O -0.122 6.122 21 C 0.158 3.842 22 O -0.218 6.218 23 N -0.206 5.206 24 C -0.087 4.087 25 C -0.076 4.076 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.155 0.845 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.168 0.832 38 H 0.156 0.844 39 H 0.279 0.721 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.354 -0.721 17.730 19.613 hybrid contribution 0.239 -1.033 -0.588 1.212 sum -8.114 -1.754 17.142 19.047 Atomic orbital electron populations 1.22549 0.98549 1.01619 1.01345 1.21763 0.90969 0.98428 0.91373 0.90811 1.21634 1.00641 0.98411 0.92980 1.18995 0.88269 0.96447 0.97025 1.21357 0.91837 1.33960 1.08461 0.93159 1.24984 0.97147 0.95802 0.96478 1.69970 1.02130 1.44507 1.36887 0.86694 0.78128 0.80009 0.83727 1.20866 1.21350 1.20031 1.60576 1.57940 1.08771 1.02373 1.20915 0.99379 0.94964 0.87709 1.19781 0.93153 0.98172 0.95919 1.21116 0.95439 0.96287 0.94703 1.19938 0.99021 0.98705 0.93469 1.20055 0.96604 0.99325 0.87182 1.84462 1.33562 1.57915 1.36232 1.22407 0.78078 0.95417 0.88281 1.84898 1.89772 1.23603 1.23544 1.71000 1.30415 1.15600 1.03607 1.19477 0.90002 1.02248 0.96937 1.20139 1.00389 0.95746 0.91355 0.92751 0.93666 0.92183 0.93480 0.93476 0.97484 0.94873 0.93284 0.84518 0.94522 0.89479 0.83152 0.84359 0.72112 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 9.16 37.16 0.34 -1.96 16 2 C 0.08 1.32 2.59 -67.71 -0.18 1.14 16 3 H 0.07 1.19 7.80 -51.93 -0.40 0.78 16 4 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 5 C 0.03 0.76 4.86 -27.88 -0.14 0.62 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 7 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 10 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.67 -9.95 5.69 -107.99 -0.61 -10.56 16 15 C 0.10 1.22 5.60 -4.98 -0.03 1.20 16 16 C -0.07 -0.84 5.39 -104.64 -0.56 -1.40 16 17 C -0.06 -0.70 9.68 -39.51 -0.38 -1.08 16 18 C -0.09 -1.11 10.06 -39.55 -0.40 -1.51 16 19 C 0.02 0.24 7.42 -38.69 -0.29 -0.05 16 20 O -0.23 -2.92 10.78 -20.51 -0.22 -3.15 16 21 C 0.41 4.80 9.54 52.25 0.50 5.30 16 22 O -0.41 -3.26 13.62 -40.55 -0.55 -3.81 16 23 N -0.46 -6.32 11.37 -12.80 -0.15 -6.46 16 24 C 0.03 0.34 7.23 -84.70 -0.61 -0.27 16 25 C -0.06 -0.70 9.74 -39.27 -0.38 -1.08 16 26 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.04 0.50 7.45 -51.93 -0.39 0.12 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.03 0.90 7.75 -51.93 -0.40 0.50 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.34 4.71 8.46 -39.30 -0.33 4.38 16 35 H 0.04 0.40 7.37 -51.93 -0.38 0.01 16 36 H 0.09 1.09 8.00 -51.93 -0.42 0.68 16 37 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.42 0.79 9.06 45.56 0.41 1.20 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -33.77 343.09 -8.15 -41.92 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.84 Total: 0.99 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.67 Total: -14.73 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.02 Total: -43.24 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.77 Total: -6.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.77 -8.15 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.115 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds