Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46580 * 2 1 4 4 C 1.53000 * 109.47021 * 240.00689 * 2 1 3 5 5 C 1.53000 * 109.46900 * 174.99848 * 4 2 1 6 6 C 1.50702 * 109.46824 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99915 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00219 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99706 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00376 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47041 * 90.00175 * 10 8 6 12 12 H 1.48499 * 109.47511 * 210.00241 * 10 8 6 13 13 H 1.48497 * 109.47149 * 330.00378 * 10 8 6 14 14 N 1.46900 * 109.47038 * 120.00443 * 2 1 3 15 15 C 1.46900 * 110.99761 * 274.99727 * 14 2 1 16 16 C 1.50700 * 109.47215 * 180.02562 * 15 14 2 17 17 C 1.38657 * 119.79998 * 89.99829 * 16 15 14 18 18 C 1.38005 * 120.46075 * 179.97438 * 17 16 15 19 19 C 1.38562 * 119.89036 * 0.02562 * 18 17 16 20 20 O 1.35261 * 133.81310 * 180.02562 * 19 18 17 21 21 C 1.34385 * 108.18765 * 179.97438 * 20 19 18 22 22 O 1.35188 * 124.93269 * 179.97438 * 21 20 19 23 23 N 1.30615 * 110.13572 * 0.02562 * 21 20 19 24 24 C 1.36145 * 108.72099 * 359.97438 * 23 21 20 25 25 C 1.37755 * 119.80287 * 270.00403 * 16 15 14 26 26 H 1.09000 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47264 * 299.99615 * 1 2 3 28 28 H 1.08999 * 109.47471 * 59.99604 * 1 2 3 29 29 H 1.09000 * 109.46697 * 294.99771 * 4 2 1 30 30 H 1.08999 * 109.47397 * 54.99324 * 4 2 1 31 31 H 1.08995 * 109.46944 * 299.99622 * 5 4 2 32 32 H 1.08998 * 109.47036 * 60.00146 * 5 4 2 33 33 H 0.97005 * 120.00488 * 179.97438 * 9 8 6 34 34 H 1.00893 * 111.00086 * 38.94997 * 14 2 1 35 35 H 1.09002 * 109.47194 * 60.00700 * 15 14 2 36 36 H 1.09004 * 109.47192 * 300.00439 * 15 14 2 37 37 H 1.08003 * 119.77291 * 0.25914 * 17 16 15 38 38 H 1.08003 * 120.05082 * 180.02562 * 18 17 16 39 39 H 0.96700 * 113.99857 * 270.00995 * 22 21 20 40 40 H 1.08002 * 120.13112 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 6 4.0672 -1.3239 -2.5440 7 1 3.3686 -1.8043 -3.2132 8 6 5.4183 -1.3601 -2.8159 9 7 6.2689 -0.7748 -2.0012 10 14 6.0410 -2.2406 -4.3411 11 1 6.0905 -1.2864 -5.4779 12 1 7.4025 -2.7745 -4.0834 13 1 5.1250 -3.3607 -4.6747 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5885 -0.5217 3.5557 17 6 3.9498 -0.5710 3.8145 18 6 4.4281 -1.2481 4.9178 19 6 3.5440 -1.8844 5.7743 20 8 3.6946 -2.6088 6.9066 21 6 2.4761 -2.9894 7.3262 22 8 2.2342 -3.7307 8.4306 23 7 1.5593 -2.5401 6.5116 24 6 2.1661 -1.8376 5.5156 25 6 1.6959 -1.1489 4.3968 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.7516 -1.7714 -1.2057 30 1 1.6053 -0.2616 -2.1370 31 1 3.8531 0.4372 -1.3574 32 1 3.9994 -1.0727 -0.4261 33 1 7.2196 -0.8005 -2.1922 34 1 1.4496 -1.4979 1.4099 35 1 1.0871 0.6161 2.5526 36 1 2.7589 1.0461 2.1182 37 1 4.6404 -0.0722 3.1506 38 1 5.4897 -1.2819 5.1134 39 1 2.2289 -4.6844 8.2707 40 1 0.6365 -1.1081 4.1908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = -36.355613 kcal Electronic energy + Delta-G solvation = -22073.304405 eV Core-core repulsion = 18660.457514 eV Total energy + Delta-G solvation = -3412.846891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.33561 -39.91494 -38.86064 -38.04352 -35.81690 -35.24497 -33.60068 -31.63802 -30.76038 -29.72082 -26.99877 -26.15243 -24.42535 -23.28402 -23.07959 -22.76280 -21.33698 -20.42377 -18.86841 -18.47638 -18.31803 -17.70570 -16.58477 -16.45401 -16.36968 -15.94046 -15.62228 -15.28331 -14.79662 -14.50252 -14.39842 -14.09865 -13.81262 -13.72980 -13.36646 -13.19391 -12.98619 -12.91536 -12.81070 -12.44097 -12.38049 -12.36719 -12.24983 -11.74294 -11.60730 -11.46355 -11.15639 -10.91261 -10.43690 -9.80018 -9.50862 -9.06527 -8.09952 -6.19047 -0.44496 0.07759 0.83029 1.22512 1.41974 1.42904 1.53642 2.34240 2.46416 2.50149 3.22433 3.36882 3.47087 3.75887 3.91513 4.03016 4.13663 4.18728 4.25309 4.39352 4.51201 4.57420 4.67591 4.76531 4.84785 4.96918 5.03944 5.05406 5.11224 5.17150 5.18165 5.35796 5.49214 5.53408 5.55578 5.64442 5.95572 6.09392 6.19269 6.29876 6.37415 6.40414 6.65128 7.00889 7.48401 9.00940 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.003217 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.301336 B = 8700.593684 C = 9677.208967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.067 0.933 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.052 0.948 8 C 0.001 3.999 9 N -0.929 5.929 10 Si 0.956 3.044 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.266 1.266 14 N -0.687 5.687 15 C 0.105 3.895 16 C -0.068 4.068 17 C -0.068 4.068 18 C -0.091 4.091 19 C 0.001 3.999 20 O -0.234 6.234 21 C 0.421 3.579 22 O -0.405 6.405 23 N -0.489 5.489 24 C 0.010 3.990 25 C -0.057 4.057 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.048 0.952 31 H -0.020 1.020 32 H 0.008 0.992 33 H 0.260 0.740 34 H 0.342 0.658 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.445 0.555 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 -1.844 17.570 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 H 0.086 0.914 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.070 0.930 8 C -0.197 4.197 9 N -0.570 5.570 10 Si 0.781 3.219 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.191 1.191 14 N -0.318 5.318 15 C -0.023 4.023 16 C -0.070 4.070 17 C -0.087 4.087 18 C -0.110 4.110 19 C -0.049 4.049 20 O -0.129 6.129 21 C 0.171 3.829 22 O -0.217 6.217 23 N -0.233 5.233 24 C -0.101 4.101 25 C -0.077 4.077 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.067 0.933 31 H -0.002 1.002 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.311 0.689 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.395 -1.379 17.853 20.221 hybrid contribution 0.582 -0.887 -0.522 1.182 sum -8.813 -2.265 17.330 19.574 Atomic orbital electron populations 1.22408 0.95532 1.02390 1.02616 1.21521 0.93209 0.97214 0.89805 0.91439 1.21468 0.96663 0.98963 0.95651 1.18822 0.92080 0.93939 0.94955 1.21830 0.92402 1.34268 1.09519 0.92978 1.25882 0.97467 0.96568 0.99773 1.70100 1.02477 1.45663 1.38774 0.85589 0.77564 0.79003 0.79721 1.19948 1.20884 1.19081 1.60442 1.58612 1.09673 1.03073 1.20872 1.00490 0.94237 0.86694 1.19781 0.93147 0.98223 0.95883 1.21216 0.95726 0.96744 0.95015 1.20122 0.99854 0.98017 0.92987 1.20256 0.96883 1.00028 0.87732 1.84461 1.34150 1.58028 1.36215 1.22625 0.77581 0.94627 0.88056 1.84877 1.89335 1.25590 1.21939 1.70993 1.31036 1.16854 1.04426 1.19737 0.90348 1.02567 0.97430 1.20272 1.01130 0.95351 0.90906 0.92224 0.91518 0.91787 0.93750 0.93331 1.00206 0.97381 0.93102 0.83903 0.92202 0.90095 0.83238 0.82679 0.68908 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.16 71.98 0.66 -3.24 16 2 C 0.09 2.81 2.59 44.92 0.12 2.92 16 3 H 0.07 2.14 7.80 -2.39 -0.02 2.12 16 4 C -0.09 -3.57 4.83 30.59 0.15 -3.42 16 5 C 0.04 2.06 4.86 29.85 0.15 2.20 16 6 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 7 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 8 C 0.00 0.03 5.46 84.65 0.46 0.49 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 10 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 N -0.69 -20.08 5.69 -495.56 -2.82 -22.90 16 15 C 0.11 2.50 5.60 85.56 0.48 2.98 16 16 C -0.07 -1.65 5.39 -19.88 -0.11 -1.75 16 17 C -0.07 -1.69 9.68 22.31 0.22 -1.47 16 18 C -0.09 -2.17 10.06 22.29 0.22 -1.95 16 19 C 0.00 0.01 7.42 22.84 0.17 0.18 16 20 O -0.23 -5.85 10.78 9.27 0.10 -5.75 16 21 C 0.42 9.44 9.54 130.42 1.24 10.69 16 22 O -0.41 -5.67 13.62 -62.41 -0.85 -6.52 16 23 N -0.49 -12.95 11.37 -422.74 -4.81 -17.76 16 24 C 0.01 0.28 7.23 39.29 0.28 0.56 16 25 C -0.06 -1.36 9.74 22.47 0.22 -1.14 16 26 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.07 1.26 7.45 -2.38 -0.02 1.25 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 32 H 0.01 0.44 7.75 -2.39 -0.02 0.42 16 33 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 34 H 0.34 9.20 8.46 -89.70 -0.76 8.45 16 35 H 0.06 1.16 7.37 -2.39 -0.02 1.14 16 36 H 0.08 2.01 8.00 -2.38 -0.02 1.99 16 37 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 39 H 0.45 0.64 9.06 -74.06 -0.67 -0.03 16 40 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -72.85 343.09 -1.94 -74.79 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -0.36 Total: 11.81 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.49 Total: -23.99 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -7.34 Total: -97.26 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.75 Total: -12.27 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -72.85 -1.94 -74.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.435 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds