Wall clock time and date at job start Tue Mar 31 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47394 * 2 1 4 4 C 1.52998 * 109.47199 * 120.00447 * 2 1 3 5 5 C 1.50703 * 109.47404 * 184.99847 * 4 2 1 6 6 C 1.38235 * 119.99838 * 89.99735 * 5 4 2 7 7 C 1.38234 * 119.99692 * 180.02562 * 6 5 4 8 8 C 1.38241 * 120.00104 * 0.02562 * 7 6 5 9 9 N 1.48020 * 120.00001 * 179.97438 * 8 7 6 10 10 O 1.21803 * 119.99894 * 359.97438 * 9 8 7 11 11 O 1.21799 * 119.99903 * 179.72763 * 9 8 7 12 12 C 1.38239 * 119.99659 * 0.25361 * 8 7 6 13 13 C 1.38231 * 120.00010 * 359.49273 * 12 8 7 14 14 N 1.46905 * 109.47180 * 240.00147 * 2 1 3 15 15 C 1.47476 * 111.00189 * 155.97204 * 14 2 1 16 16 C 1.53514 * 87.93394 * 221.29612 * 15 14 2 17 17 C 1.50702 * 114.16773 * 139.67065 * 16 15 14 18 18 H 1.08001 * 119.99939 * 266.15751 * 17 16 15 19 19 C 1.37872 * 120.00036 * 86.16089 * 17 16 15 20 20 N 1.31515 * 120.00211 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00085 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47251 * 89.99588 * 21 19 17 23 23 H 1.48501 * 109.46990 * 209.99924 * 21 19 17 24 24 H 1.48500 * 109.46836 * 329.99855 * 21 19 17 25 25 C 1.47483 * 110.99927 * 60.00133 * 14 2 1 26 26 H 1.09006 * 109.46692 * 59.99836 * 1 2 3 27 27 H 1.08994 * 109.46978 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46829 * 299.99903 * 1 2 3 29 29 H 1.08999 * 109.47333 * 64.99724 * 4 2 1 30 30 H 1.09002 * 109.47050 * 304.99852 * 4 2 1 31 31 H 1.07998 * 119.99910 * 0.02562 * 6 5 4 32 32 H 1.08002 * 120.00159 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.99627 * 179.73007 * 12 8 7 34 34 H 1.08002 * 119.99557 * 180.23223 * 13 12 8 35 35 H 1.09002 * 113.47968 * 336.06588 * 15 14 2 36 36 H 1.09004 * 113.47473 * 106.53163 * 15 14 2 37 37 H 1.08997 * 114.17135 * 272.37757 * 16 15 14 38 38 H 0.96996 * 120.00297 * 180.02562 * 20 19 17 39 39 H 1.08997 * 113.47745 * 253.47316 * 25 14 2 40 40 H 1.08999 * 113.47431 * 23.87918 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6151 1.3127 6 6 4.1324 0.4491 1.9683 7 6 5.5101 0.5468 2.0260 8 6 6.2973 -0.4193 1.4278 9 7 7.7725 -0.3143 1.4892 10 8 8.2928 0.6236 2.0664 11 8 8.4661 -1.1682 0.9664 12 6 5.7067 -1.4804 0.7673 13 6 4.3291 -1.5809 0.7140 14 7 2.0197 -0.6925 -1.1995 15 6 3.3815 -0.2466 -1.5483 16 6 2.9447 -0.2469 -3.0200 17 6 3.4687 0.9182 -3.8194 18 1 2.8688 1.8092 -3.9319 19 6 4.7137 0.8466 -4.4073 20 7 5.1708 1.8631 -5.1053 21 14 5.7509 -0.6950 -4.2134 22 1 5.4481 -1.6377 -5.3201 23 1 7.1901 -0.3314 -4.2526 24 1 5.4388 -1.3413 -2.9134 25 6 1.5469 -0.0237 -2.4259 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -1.7716 1.2055 30 1 1.6054 -0.2619 2.1369 31 1 3.5174 1.2041 2.4353 32 1 5.9715 1.3785 2.5379 33 1 6.3217 -2.2329 0.2961 34 1 3.8678 -2.4119 0.2011 35 1 3.6244 0.7455 -1.1677 36 1 4.1511 -0.9850 -1.3236 37 1 3.0682 -1.2065 -3.5220 38 1 6.0466 1.8126 -5.5192 39 1 0.7616 -0.5732 -2.9450 40 1 1.2992 1.0276 -2.2793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173224882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:13 Heat of formation + Delta-G solvation = 35.581328 kcal Electronic energy + Delta-G solvation = -23613.132818 eV Core-core repulsion = 20203.405347 eV Total energy + Delta-G solvation = -3409.727471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.30765 -41.54540 -40.08713 -37.74323 -36.05597 -34.51665 -32.96654 -32.43555 -29.69978 -29.01305 -26.80662 -25.96838 -25.41118 -24.16404 -22.86090 -21.26806 -20.51541 -20.40157 -19.82783 -19.01845 -18.67398 -17.26438 -17.03890 -16.46591 -16.35487 -15.79657 -15.60315 -15.30222 -14.85524 -14.75723 -14.48978 -14.10430 -13.50474 -13.34402 -13.17025 -13.09225 -12.94283 -12.81554 -12.68223 -12.42188 -12.37733 -12.31174 -12.17167 -11.92272 -11.81904 -11.62124 -11.26620 -11.09692 -10.75130 -10.31115 -10.13644 -9.68049 -8.35017 -6.38441 -1.26690 0.00930 0.26795 0.37414 1.29371 1.33312 1.41790 2.27981 2.29917 2.99883 3.20179 3.40087 3.48928 3.54745 3.88234 3.92271 4.03242 4.09578 4.23809 4.28363 4.32924 4.41555 4.55269 4.62582 4.65623 4.73977 4.81329 4.86812 4.89050 4.95922 5.02643 5.05601 5.13503 5.18630 5.26812 5.33807 5.46565 5.49639 5.57482 5.61252 6.24853 6.31472 6.43735 6.67891 7.28144 8.80974 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010766 B = 0.007722 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.175169 B = 3624.993583 C = 5565.051732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 H 0.038 0.962 4 C -0.069 4.069 5 C -0.021 4.021 6 C -0.111 4.111 7 C -0.059 4.059 8 C -0.072 4.072 9 N 0.032 4.968 10 O -0.173 6.173 11 O -0.199 6.199 12 C -0.071 4.071 13 C -0.100 4.100 14 N -0.460 5.460 15 C 0.004 3.996 16 C -0.024 4.024 17 C -0.509 4.509 18 H 0.034 0.966 19 C 0.017 3.983 20 N -0.948 5.948 21 Si 0.930 3.070 22 H -0.266 1.266 23 H -0.299 1.299 24 H -0.233 1.233 25 C 0.023 3.977 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.178 0.822 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 -7.185 18.080 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 H 0.056 0.944 4 C -0.106 4.106 5 C -0.021 4.021 6 C -0.130 4.130 7 C -0.078 4.078 8 C -0.155 4.155 9 N 0.546 4.454 10 O -0.389 6.389 11 O -0.408 6.408 12 C -0.090 4.090 13 C -0.118 4.118 14 N -0.183 5.183 15 C -0.126 4.126 16 C -0.043 4.043 17 C -0.547 4.547 18 H 0.052 0.948 19 C -0.181 4.181 20 N -0.588 5.588 21 Si 0.755 3.245 22 H -0.191 1.191 23 H -0.225 1.225 24 H -0.156 1.156 25 C -0.106 4.106 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.196 0.804 32 H 0.180 0.820 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.003 -7.907 18.106 21.712 hybrid contribution 1.828 0.870 -0.792 2.173 sum -7.175 -7.037 17.315 20.020 Atomic orbital electron populations 1.21801 0.92182 1.03151 1.02546 1.22346 0.97272 0.95699 0.91261 0.94392 1.20842 0.87860 1.03872 0.98044 1.20697 0.98197 0.92146 0.91106 1.21477 0.92546 0.99047 0.99899 1.21288 0.94436 0.96564 0.95468 1.21339 0.77509 1.03951 1.12751 1.43988 1.04884 0.99060 0.97510 1.94472 1.76727 1.24954 1.42782 1.94516 1.62838 1.35624 1.47831 1.21196 0.96720 0.95965 0.95134 1.21339 0.90930 1.01128 0.98437 1.68896 1.03691 1.44552 1.01143 1.24228 0.92897 0.97585 0.97841 1.20591 0.95102 0.95918 0.92704 1.21180 1.01530 1.00822 1.31199 0.94814 1.25828 0.99121 0.99020 0.94100 1.70044 1.19733 1.33327 1.35720 0.85984 0.77106 0.80478 0.80971 1.19075 1.22544 1.15598 1.23556 0.97915 0.97168 0.91969 0.93457 0.91148 0.89861 0.88239 0.86599 0.80448 0.81956 0.83379 0.82301 0.93988 0.90865 0.92468 0.92691 0.89992 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.09 71.98 0.65 -1.76 16 2 C 0.04 0.94 1.98 44.91 0.09 1.03 16 3 H 0.04 0.95 7.52 -2.39 -0.02 0.93 16 4 C -0.07 -1.05 5.03 29.85 0.15 -0.90 16 5 C -0.02 -0.41 4.09 -19.87 -0.08 -0.49 16 6 C -0.11 -2.03 9.70 22.27 0.22 -1.81 16 7 C -0.06 -1.34 9.56 22.27 0.21 -1.13 16 8 C -0.07 -2.07 6.85 36.38 0.25 -1.83 16 9 N 0.03 1.10 4.45 -46.46 -0.21 0.89 16 10 O -0.17 -5.89 18.45 18.88 0.35 -5.54 16 11 O -0.20 -7.22 18.45 18.89 0.35 -6.87 16 12 C -0.07 -1.89 9.42 22.27 0.21 -1.68 16 13 C -0.10 -2.27 6.21 22.27 0.14 -2.13 16 14 N -0.46 -13.42 6.04 -902.46 -5.45 -18.87 16 15 C 0.00 0.13 4.44 83.57 0.37 0.50 16 16 C -0.02 -1.03 2.96 -11.19 -0.03 -1.06 16 17 C -0.51 -28.05 9.37 25.60 0.24 -27.81 16 18 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 19 C 0.02 0.97 5.47 84.65 0.46 1.43 16 20 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 21 Si 0.93 44.12 27.14 68.60 1.86 45.98 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.23 -9.92 5.68 99.48 0.57 -9.35 16 25 C 0.02 0.79 6.01 83.57 0.50 1.30 16 26 H 0.05 0.96 7.03 -2.38 -0.02 0.95 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 30 H 0.12 1.04 8.09 -2.39 -0.02 1.02 16 31 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.16 3.21 7.61 -2.91 -0.02 3.19 16 33 H 0.15 3.87 7.61 -2.91 -0.02 3.85 16 34 H 0.16 3.28 7.95 -2.91 -0.02 3.26 16 35 H 0.04 1.69 7.49 -2.39 -0.02 1.67 16 36 H 0.07 2.63 4.37 -2.38 -0.01 2.62 16 37 H 0.06 2.48 7.04 -2.39 -0.02 2.46 16 38 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 39 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.05 1.92 7.61 -2.39 -0.02 1.90 16 Total: -1.00 -69.09 327.82 1.48 -67.61 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.90 Total: 12.12 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 3.38 Total: -36.33 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -5.36 Total: -76.97 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.70 Total: -12.41 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.86 Total: 45.98 kcal Total: -69.09 1.48 -67.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173224882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.191 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds