Wall clock time and date at job start Tue Mar 31 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.64134 * 2 1 4 4 C 1.54335 * 110.84904 * 236.83681 * 2 1 3 5 5 N 1.47028 * 107.26121 * 219.67199 * 4 2 1 6 6 C 1.34777 * 125.64479 * 178.84760 * 5 4 2 7 7 O 1.21587 * 120.00071 * 359.72168 * 6 5 4 8 8 N 1.34780 * 119.99718 * 179.97438 * 6 5 4 9 9 C 1.39955 * 119.99570 * 174.53889 * 8 6 5 10 10 C 1.39291 * 119.94438 * 146.38488 * 9 8 6 11 11 C 1.38490 * 120.43242 * 179.97438 * 10 9 8 12 12 C 1.37682 * 120.31677 * 359.97438 * 11 10 9 13 13 C 1.40736 * 119.88492 * 0.02562 * 12 11 10 14 14 C 1.41412 * 120.21028 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00149 * 151.79874 * 14 13 12 16 16 C 1.39927 * 119.99926 * 331.79389 * 14 13 12 17 17 N 1.30835 * 120.00133 * 348.99323 * 16 14 13 18 18 Si 1.86798 * 120.00078 * 168.99007 * 16 14 13 19 19 H 1.48497 * 109.47259 * 90.00237 * 18 16 14 20 20 H 1.48497 * 109.47254 * 210.00252 * 18 16 14 21 21 H 1.48500 * 109.47279 * 330.00307 * 18 16 14 22 22 C 1.38234 * 119.94952 * 326.10724 * 9 8 6 23 23 C 1.47418 * 108.70460 * 358.58638 * 5 4 2 24 24 C 1.54911 * 104.83130 * 24.35516 * 23 5 4 25 25 H 1.09004 * 111.00219 * 81.06682 * 24 23 5 26 26 O 1.42900 * 111.00446 * 204.91531 * 24 23 5 27 27 H 1.08993 * 109.47167 * 296.85625 * 1 2 3 28 28 H 1.09000 * 109.47195 * 56.86198 * 1 2 3 29 29 H 1.09003 * 109.47044 * 176.85550 * 1 2 3 30 30 H 1.08993 * 109.99460 * 100.20201 * 4 2 1 31 31 H 1.09005 * 109.77878 * 339.02435 * 4 2 1 32 32 H 0.96992 * 119.99747 * 354.54057 * 8 6 5 33 33 H 1.08003 * 119.78521 * 359.95117 * 10 9 8 34 34 H 1.07995 * 119.84262 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.05611 * 180.02562 * 12 11 10 36 36 H 0.96993 * 119.99867 * 179.97438 * 17 16 14 37 37 H 1.07991 * 120.15890 * 0.02562 * 22 9 8 38 38 H 1.09003 * 110.36660 * 143.19187 * 23 5 4 39 39 H 1.08999 * 110.36874 * 265.51905 * 23 5 4 40 40 H 0.96705 * 114.00258 * 298.54486 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2074 5 7 3.2446 -1.5519 -0.7364 6 6 3.9923 -2.3861 -1.4857 7 8 3.7186 -2.5612 -2.6574 8 7 5.0405 -3.0300 -0.9350 9 6 5.7468 -3.9816 -1.6795 10 6 7.1179 -4.1360 -1.4883 11 6 7.8267 -5.0748 -2.2192 12 6 7.1829 -5.8668 -3.1432 13 6 5.7979 -5.7220 -3.3472 14 6 5.1298 -6.5314 -4.2949 15 1 4.0850 -6.7700 -4.1604 16 6 5.8222 -7.0232 -5.4069 17 7 7.0156 -6.5671 -5.6887 18 14 5.0426 -8.3310 -6.4892 19 1 4.2657 -7.6780 -7.5732 20 1 6.1062 -9.1794 -7.0844 21 1 4.1362 -9.1755 -5.6703 22 6 5.0818 -4.7706 -2.5993 23 6 3.4633 -1.2486 0.6896 24 6 2.0789 -0.7934 1.2151 25 1 1.4452 -1.6512 1.4402 26 8 2.2179 0.0523 2.3585 27 1 -0.3633 0.4642 0.9168 28 1 -0.3633 0.5618 -0.8605 29 1 -0.3633 -1.0261 -0.0564 30 1 2.3815 -0.1003 -1.9963 31 1 1.3156 -1.4714 -1.5804 32 1 5.3051 -2.8340 -0.0227 33 1 7.6316 -3.5193 -0.7657 34 1 8.8894 -5.1868 -2.0630 35 1 7.7397 -6.5979 -3.7106 36 1 7.4957 -6.9082 -6.4594 37 1 4.0181 -4.6544 -2.7453 38 1 3.7960 -2.1406 1.2205 39 1 4.1931 -0.4465 0.7992 40 1 2.6474 -0.3737 3.1130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310752329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:28 Heat of formation + Delta-G solvation = -51.505626 kcal Electronic energy + Delta-G solvation = -22697.887635 eV Core-core repulsion = 19284.383791 eV Total energy + Delta-G solvation = -3413.503845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40596 -38.73499 -37.13953 -35.68975 -34.40520 -33.23242 -32.50968 -29.76930 -28.87986 -28.20424 -26.21383 -25.23313 -23.29639 -21.43774 -20.87149 -20.45845 -19.42073 -18.16060 -17.80627 -17.26177 -16.10077 -15.55283 -15.27030 -14.86605 -14.75297 -14.48703 -14.10456 -13.82550 -13.42105 -13.34543 -12.98290 -12.85039 -12.51878 -12.40405 -12.12894 -11.77613 -11.61576 -11.33758 -11.25914 -11.06370 -10.77421 -10.63774 -10.51586 -10.46342 -10.10756 -9.72125 -9.55949 -9.17713 -8.87927 -8.58541 -7.37134 -6.82932 -6.61611 -4.29944 2.64861 2.81661 2.97687 3.12848 3.17657 3.24642 3.65809 3.77253 4.01639 4.09683 4.26993 4.41924 4.63888 4.72940 4.93166 5.01746 5.10631 5.34006 5.44366 5.54490 5.60770 5.75188 5.76545 5.83059 6.01400 6.16229 6.27487 6.42208 6.81642 6.86889 7.08267 7.14137 7.22253 7.30558 7.37111 7.71014 7.83081 8.03087 8.14621 8.29353 8.41187 8.71436 8.93567 9.01645 9.06622 10.31647 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.003558 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.140584 B = 7866.638721 C = 8725.810277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.093 0.907 4 C 0.132 3.868 5 N -0.638 5.638 6 C 0.716 3.284 7 O -0.556 6.556 8 N -0.679 5.679 9 C 0.166 3.834 10 C -0.260 4.260 11 C -0.093 4.093 12 C -0.169 4.169 13 C 0.120 3.880 14 C -0.458 4.458 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.802 5.802 18 Si 0.911 3.089 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.207 4.207 23 C 0.068 3.932 24 C 0.096 3.904 25 H 0.077 0.923 26 O -0.556 6.556 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.393 0.607 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.278 0.722 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.738 9.598 13.548 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.112 0.888 4 C 0.009 3.991 5 N -0.380 5.380 6 C 0.418 3.582 7 O -0.431 6.431 8 N -0.325 5.325 9 C 0.074 3.926 10 C -0.282 4.282 11 C -0.112 4.112 12 C -0.189 4.189 13 C 0.117 3.883 14 C -0.488 4.488 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.428 5.428 18 Si 0.736 3.264 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.229 4.229 23 C -0.057 4.057 24 C 0.036 3.964 25 H 0.095 0.905 26 O -0.360 6.360 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -8.039 9.819 12.034 17.489 hybrid contribution 0.297 -0.709 0.290 0.822 sum -7.742 9.110 12.325 17.170 Atomic orbital electron populations 1.21752 0.93176 1.02436 1.02495 1.22239 0.96823 1.00100 0.92295 0.88836 1.21850 0.87150 0.94190 0.95952 1.47418 1.32342 1.48142 1.10115 1.15476 0.79967 0.78425 0.84324 1.91013 1.71414 1.66548 1.14099 1.42598 1.31492 1.42013 1.16415 1.17244 0.90158 0.89683 0.95532 1.20014 0.91633 1.07643 1.08880 1.20461 0.97268 0.96671 0.96827 1.21399 0.95691 1.02170 0.99610 1.17500 0.91891 0.89067 0.89874 1.19538 0.97657 1.26638 1.04954 0.90608 1.25876 0.94551 0.95924 0.97943 1.69807 1.11973 1.36187 1.24813 0.86273 0.79562 0.80656 0.79950 1.19545 1.20203 1.18586 1.21003 0.99500 0.98920 1.03499 1.22965 0.98661 1.01038 0.83011 1.23024 0.94469 0.92847 0.86086 0.90489 1.86521 1.83183 1.41988 1.24357 0.91745 0.91878 0.92191 0.91114 0.90977 0.77365 0.89400 0.89008 0.86070 0.91067 0.87491 0.90685 0.90785 0.77108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.16 37.16 0.34 -0.74 16 2 C -0.10 -0.88 3.27 -88.78 -0.29 -1.17 16 3 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.13 1.62 6.48 -3.05 -0.02 1.60 16 5 N -0.64 -9.16 3.33 -176.23 -0.59 -9.75 16 6 C 0.72 14.01 8.22 -86.91 -0.71 13.30 16 7 O -0.56 -13.66 14.38 5.29 0.08 -13.58 16 8 N -0.68 -12.82 5.29 -14.27 -0.08 -12.89 16 9 C 0.17 3.88 6.26 -83.76 -0.52 3.36 16 10 C -0.26 -5.85 9.97 -39.10 -0.39 -6.24 16 11 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 12 C -0.17 -4.51 8.66 -38.84 -0.34 -4.85 16 13 C 0.12 3.36 5.55 -106.85 -0.59 2.77 16 14 C -0.46 -12.83 9.06 -37.74 -0.34 -13.17 16 15 H 0.08 2.06 7.87 -52.48 -0.41 1.65 16 16 C 0.07 1.93 5.25 -17.34 -0.09 1.84 16 17 N -0.80 -21.59 10.81 55.55 0.60 -20.99 16 18 Si 0.91 19.55 29.57 -169.99 -5.03 14.52 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.21 -5.54 8.39 -38.69 -0.32 -5.87 16 23 C 0.07 0.67 6.27 -2.53 -0.02 0.65 16 24 C 0.10 0.81 3.88 -24.59 -0.10 0.72 16 25 H 0.08 0.62 8.05 -51.93 -0.42 0.21 16 26 O -0.56 -4.27 13.47 -35.23 -0.47 -4.74 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 32 H 0.39 5.80 7.36 -40.82 -0.30 5.50 16 33 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.32 6.18 -52.48 -0.32 2.99 16 36 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 37 H 0.11 2.97 6.44 -52.49 -0.34 2.63 16 38 H 0.07 0.65 7.38 -51.93 -0.38 0.26 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.38 1.32 9.11 45.56 0.42 1.74 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -33.67 331.97 -8.96 -42.63 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.68 Total: 10.22 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -3.79 Total: -10.41 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.06 Total: -43.63 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.40 Total: -18.32 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.67 -8.96 -42.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310752329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.880 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds